Relative importance of pollen and seed dispersal across a Neotropical mountain landscape for an epiphytic orchid

Molecular Ecology

Volumn 22, Issue 24, 2013, Pages 6048-6059

  Kartzinel, Tyler R ^a   Shefferson, Richard P ^a   Trapnell, Dorset W ^a  

^a UNIVERSITY OF GEORGIA   (United States)

Author keywords

chloroplast DNA; gene dispersal; genetic structure; microsatellites; pollinator

Indexed keywords

EPIDENDRUM; ORCHIDACEAE;

CHLOROPLAST DNA; MICROSATELLITE DNA;

ARTICLE; CELL NUCLEUS; COSTA RICA; ECOSYSTEM; GENE DISPERSAL; GENE FLOW; GENETIC VARIABILITY; GENETICS; GENOTYPE; GEOGRAPHY; MICROSATELLITES; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; ORCHIDACEAE; POLLEN; POLLINATION; POLLINATOR; POPULATION GENETICS; SEED DISPERSAL; WIND;

CHLOROPLAST DNA; GENE DISPERSAL; GENETIC STRUCTURE; MICROSATELLITES; POLLINATOR;

CELL NUCLEUS; COSTA RICA; DNA, CHLOROPLAST; ECOSYSTEM; GENE FLOW; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; ORCHIDACEAE; POLLEN; POLLINATION; SEED DISPERSAL; WIND;

EID: 84890117317     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12551     Document Type: Article

References (65)

1. Arditti J, Ghani AKA, (2000) Tansley review No. 110-Numerical and physical properties of orchid seeds and their biological implications. New Phytologist, 145, 367-421.
2. Avise JC, (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusettes.
3. Bandelt H-J, Forster P, Röhl, (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37-48.
4. Cafasso D, Widmer A, Cozzolino S, (2005) Chloroplast DNA inheritance in the orchid Anacamptis palustris using single-seed polymerase chain reaction. Journal of Heredity, 96, 66-70.
5. Cavender-Bares J, Gonzalez-Rodriquez A, Pahlich A, Koehler K, Deacon N, (2011) Phylogeography and climatic niche evolution in live oaks (Quercus series Virentes) from the tropics to the temperate zone. Journal of Biogeography, 38, 962-981.
6. Coates AG, Obando JA, (1996) The geologic evolution of the Central American isthmus. In: Evolution and Environment in Tropical America (eds, Jackson JBC, Budd AF, Coates JA,), pp. 21-56. University of Chicago Press, Chicago, Illinois.
7. Coen E, (1983) Climate. In: Costa Rica Natural History (ed., Janzen DH,), pp. 35-46. University of Chicago Press, Chicago, Illinois.
8. Coyne JA, Orr HA, (2004) Speciation. Sinauer Associates Inc, Sunderland, Massachusettes.
9. Dodson CH, Frymire GP, (1961) Natural pollination of orchids. Missouri Botanical Garden Bulletin, 49, 133-152.
10. Dressler RL, (1993) Field Guide to the Orchids of Costa Rica and Panama. Cornell University Press, New York City, New York.
11. Ennos RA, (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity, 72, 250-259.
12. Excoffier L, Laval G, Schneider S, (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 47-50.
13. Gentry AH, Dodson CH, (1987) Diversity and biogeography of Neotropical vascular epiphytes. Annals of the Missouri Botanical Garden, 74, 205-233.
14. Goss GJ, (1977) The reproductive biology of the epiphytic orchids of Florida, 5. Epidendrum difforme Jacquin. American Orchid Society Bulletin, 46, 631-636.
15. Goudet J, (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
16. Haber WA, Frankie GW, (1989) A tropical hawkmoth community: Costa Rican dry forest Sphingidae. Biotropica, 21, 155-172.
17. Hamilton MB, Miller JR, (2002) Comparing relative rates of pollen and seed gene flow in the Island Model using nuclear and organelle measures of population structure. Genetics, 162, 1897-1909.
18. Hammel BE, Grayum MH, Herrera C, Zamora N, (eds) (2004) Manual de Plantas de Costa Rica. Vol. I. Introducciõn. Monographs in Systematic Botany from the Missouri Botanical Garden, 97, 1-299.
19. Hamrick JL, Godt MJW, (1996) Effects of life history traits on genetic diversity in plant species. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, 351, 1291-1298.
20. Hamrick JL, Nason JD, (1996) Consequences of dispersal in plants. In: Population Dynamics in Ecological Space and Time (eds, Rhodes OE, Chesser RK, Smith MH,), pp. 203-236. University of Chicago Press, Chicago, Illinois.
21. Hedrick PW, (2005) A standardized genetic differentiation measure. Evolution, 59, 1633-1638.
22. Hilt N, Fiedler K, (2005) Diversity and composition of Arctiidae moth ensembles along a successional gradient in the Ecuadorian Andes. Diversity and Distributions, 11, 387-398.
23. Jacquemyn H, Brys R, Vandepitte K, et al,. (2007) A spatially explicit analysis of seedling recruitment in the terrestrial orchid Orchis purpurea. New Phytologist, 176, 448-459.
24. Jersáková J, Malinová T, (2007) Spatial aspects of seed dispersal and seedling recruitment in orchids. New Phytologist, 176, 237-241.
25. ST and its relatives do not measure differentiation. Molecular Ecology, 17, 4015-4026.
26. Kartzinel TR, Trapnell DW, Glenn TC, (2012) Microsatellite primers for the Neotropical epiphyte Epidendrum firmum (Orchidaceae). American Journal of Botany, 99, e450-e452.
27. Larkin MA, Blackshields G, Brown NP, et al,. (2007) Clustal W and clustal X version 2.0. Bioinformatics, 23, 2947-2948.
28. Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
29. Loveless MD, Hamrick JL, (1984) Ecological determinants of genetic structure in plant populations. Annual Review of Ecology and Systematics, 15, 65-95.
30. Luo J, Fox B, (1996) A review of the Mantel test in dietary studies: effect of sample size and inequality of sample sizes. Wildlife Research, 23, 267-288.
31. Manni F, Guerard E, Heyer E, (2004) Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by using Monmonier's algorithm. Human Biology, 76, 173-190.
32. Mogensen HL, (1996) The hows and whys of cytoplasmic inheritance in seed plants. American Journal of Botany, 83, 383-404.
33. Murren CJ, Ellison AM, (1998) Seed dispersal characteristics of Brassavola nodosa (Orchidaceae). American Journal of Botany, 85, 675-680.
34. Nathan R, (2006) Long-distance dispersal of plants. Science, 313, 786-788.
35. Nathan R, Muller-Landau HC, (2000) Spatial patterns of seed dispersal, their determinants and consequences for recruitment. Trends in Ecology & Evolution, 15, 278-285.
36. Nei M, Li W-H, (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America, 76, 5269-5273.
37. Oksanen J, Blanchet FG, Kindt R, et al,. (2012) vegan: Community Ecology Package. Available at: http://CRAN.R-project.org/package=vegan.
38. Peakall R, Smouse PE, (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
39. Petit RJ, Duminil J, Fineschi S, et al,. (2005) Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology, 14, 689-701.
40. Phillips RD, Dixon KW, Peakall R, (2012) Low population genetic differentiation in the Orchidaceae: implications for the diversification of the family. Molecular Ecology, 21, 5208-5220.
41. Pinheiro F, de Barros F, Palma-Silva C, et al,. (2011) Phylogeography and genetic differentiation along the distributional range of the orchid Epidendrum fulgens: a Neotropical coastal species not restricted to glacial refugia. Journal of Biogeography, 38, 1923-1935.
42. Poelchau MF, Hamrick JL, (2011) Palaeodistribution modeling does not support disjunct Pleistocene refugia in several Central American plant taxa. Journal of Biogeography, 40, 662-675.
43. Poelchau MF, Hamrick JL, (2012) Differential effects of landscape-level environmental features on genetic structure in three codistributed tree species in Central America. Molecular Ecology, 21, 4970-4982.
44. Ponce-Reyes R, Ryeynoso-Rosales V-H, Watson JEM, et al,. (2012) Vulnerability of cloud forest reserves in Mexico to climate change. Nature Climate Change, 2, 448-452.
45. R Core Development Team (2010) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
46. Raymond M, Rousset F, (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Heredity, 86, 248-249.
47. Rousset F, (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
48. Rousset F, (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources, 8, 103-106.
49. Shafer ABA, Cullingham CI, Cote SD, Coltman DW, (2010) Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America. Molecular Ecology, 19, 4589-4621.
50. Shaw J, Lickey EB, Beck JT, et al,. (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany, 92, 142-166.
51. Slatkin M, (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457-462.
52. Smouse PE, Long JC, Sokal RR, (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Systematic Zoology, 35, 627-632.
53. Squirrell J, Hollingsworth PM, Bateman RM, et al,. (2001) Partitioning and diversity of nuclear and organelle markers in native and introduced populations of Epipactis helleborine (Orchidaceae). American Journal of Botany, 88, 1409-1418.
54. Trapnell DW, Hamrick JL, (2004) Partitioning nuclear and chloroplast variation at multiple spatial scales in the Neotropical epiphytic orchid, Laelia rubescens. Molecular Ecology, 13, 2655-2666.
55. Trapnell DW, Hamrick JL, (2005) Mating patterns and gene flow in the Neotropical epiphytic orchid, Laelia rubescens. Molecular Ecology, 14, 75-84.
56. Trapnell DW, Hamrick JL, Nason JD, (2004) Three-dimensional fine-scale genetic structure of the Neotropical epiphytic orchid, Laelia rubescens. Molecular Ecology, 13, 1111-1118.
57. Trapnell DW, Hamrick JL, Ishibashi C, Kartzinel TR, (2013) Genetic inference of epiphytic orchid colonization; it may only take one. Molecular Ecology, 22, 3680-3692.
58. Tremblay RL, Ackerman JD, Zimmerman JK, Calvo RN, (2005) Variation in sexual reproduction in orchids and its evolutionary consequences: a spasmodic journey to diversification. Biological Journal of the Linnean Society, 84, 1-54.
59. WCSP (2013) World checklist of selected plant families. Facilitated by the Royal Botanic Gardens, Kew. Available at: http://apps.kew.org/wcsp/.
60. Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
61. ST. Molecular Ecology, 20, 1083-1091.
62. Wright S, (1943) Isolation by distance. Genetics, 28, 114-138.
63. Wright S, (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-354.
64. Yu H, Nason JD, Ge X, Zeng J, (2010) Slatkin's Paradox: when direct observation and realized gene flow disagree. A case study in Ficus. Molecular Ecology, 19, 4441-4453.
65. Zahiri R, Kitching IJ, Lafontaine JD, et al,. (2011) A new molecular phylogeny offers hope for a stable family level classification of the Noctuoidea (Lepidoptera). Zoologica Scripta, 40, 158-173.