-
1
-
-
77954506029
-
Gap5 - Editing the billion fragment sequence assembly
-
Bonfield, J.K. and Whitwham, A. (2010) Gap5 - editing the billion fragment sequence assembly. Bioinformatics, 26, 1699-1703.
-
(2010)
Bioinformatics
, vol.26
, pp. 1699-1703
-
-
Bonfield, J.K.1
Whitwham, A.2
-
2
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158.
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
-
3
-
-
0025776579
-
A sequence assembly and editing program for efficient management of large projects
-
Dear, S. and Staden, R. (1991) A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res., 19, 3907-3911.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 3907-3911
-
-
Dear, S.1
Staden, R.2
-
4
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing, B. and Green, P. (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res., 8, 186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
5
-
-
43349108713
-
Viewing and editing assembled sequences using Consed
-
Chapter 11, Unit 11.12
-
Gordon, D. (2003) Viewing and editing assembled sequences using Consed. Curr. Protoc. Bioinformatics, Chapter 11, Unit 11.12.
-
(2003)
Curr. Protoc. Bioinformatics
-
-
Gordon, D.1
-
6
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D. et al. (1998) Consed: a graphical tool for sequence finishing. Genome Res., 8, 195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
-
7
-
-
0035054380
-
Automated finishing with autofinish
-
Gordon, D. et al. (2001) Automated finishing with autofinish. Genome Res., 11, 614-625.
-
(2001)
Genome Res.
, vol.11
, pp. 614-625
-
-
Gordon, D.1
-
8
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
9
-
-
67649884743
-
Fast and accurate short read alignment with Burrows- Wheeler transform
-
Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
10
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
11
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li, H. et al. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
-
(2008)
Genome Res.
, vol.18
, pp. 1851-1858
-
-
Li, H.1
-
12
-
-
52949096084
-
Next-generation DNA sequencing methods
-
Mardis, E.R. (2008) Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet., 9, 387-402.
-
(2008)
Annu. Rev. Genomics Hum. Genet.
, vol.9
, pp. 387-402
-
-
Mardis, E.R.1
-
13
-
-
77649253051
-
Visualizing genomes: Techniques and challenges
-
Nielsen, C.B. et al. (2010) Visualizing genomes: techniques and challenges. Nat. Methods, 7, S5-S15.
-
(2010)
Nat. Methods
, vol.7
-
-
Nielsen, C.B.1
-
14
-
-
34250210806
-
Hawkeye: An interactive visual analytics tool for genome assemblies
-
Schatz, M.C. et al. (2007) Hawkeye: an interactive visual analytics tool for genome assemblies. Genome Biol., 8, R34.
-
(2007)
Genome Biol.
, vol.8
-
-
Schatz, M.C.1
-
15
-
-
84862239242
-
A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
-
Swain, M.T. et al. (2012) A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs. Nat. Protoc., 7, 1260-1284.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1260-1284
-
-
Swain, M.T.1
-
16
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdottir, H. et al. (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform., 14, 178-192.
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
-
17
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18, 821-829.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
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