IMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq

BMC Bioinformatics

Volumn 14, Issue 1, 2013, Pages

  Giurato, Giorgio ^a   De Filippo, Maria R ^b   Rinaldi, Antonio ^a   Hashim, Adnan ^a   Nassa, Giovanni ^a   Ravo, Maria ^a   Rizzo, Francesca ^a   Tarallo, Roberta ^a   Weisz, Alessandro ^a,c  

^a UNIVERSITY OF SALERNO   (Italy)

^b IRCCS SDN   (Italy)

^c UNIVERSITY OF SALERNO   (Italy)

Author keywords

Breast cancer; Data analysis pipeline; microRNA; Next generation sequencing; Piwi interacting RNA; Small non coding RNA; SmallRNA Seq

Indexed keywords

BREAST CANCER; MICRORNAS; NEXT-GENERATION SEQUENCING; NON-CODING RNAS; SMALLRNA-SEQ;

BIOINFORMATICS; DISEASES; PIPELINES; RNA; TOOLS;

QUALITY CONTROL;

MICRORNA; SMALL UNTRANSLATED RNA;

ARTICLE; BINDING SITE; CELL STRAIN MCF 7; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE TARGETING; GENETIC ASSOCIATION; GENETIC CODE; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; METABOLISM; METHODOLOGY; NUCLEOTIDE SEQUENCE; PREDICTIVE VALUE; SEQUENCE ANALYSIS;

BASE SEQUENCE; BINDING SITES; GENE TARGETING; GENETIC CODE; GENOME-WIDE ASSOCIATION STUDY; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MCF-7 CELLS; MICRORNAS; PREDICTIVE VALUE OF TESTS; RNA, SMALL UNTRANSLATED; SEQUENCE ANALYSIS, RNA; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 84889954757     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-362     Document Type: Article

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