메뉴 건너뛰기




Volumn 56, Issue 10, 2013, Pages 612-618

Microbial community and potential functional gene diversity involved in anaerobic hydrocarbon degradation and methanogenesis in an oil sands tailings pond

Author keywords

454 pyrosequencing; Hydrocarbon degradation; Metagenomics; Microbial community; Oil sands tailings ponds

Indexed keywords

HYDROCARBON; METHANE; RNA 16S;

EID: 84889828452     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/gen-2013-0083     Document Type: Article
Times cited : (51)

References (38)
  • 1
    • 0034468016 scopus 로고    scopus 로고
    • Anaerobic toluene activation by benzylsuccinate synthase in a highly enriched methanogenic culture
    • DOI 10.1128/AEM.66.12.5503-5505.2000
    • Beller H.R. Edwards E.A. 2000. Anaerobic toluene activation by benzylsuccinate synthase in a highly enriched methanogenic culture. Appl. Environ. Microbiol. 66: 5503-5505. 10.1128/AEM.66.12.5503-5505.2000. 11097937. (Pubitemid 32217165)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.12 , pp. 5503-5505
    • Beller, H.R.1    Edwards, E.A.2
  • 2
    • 0031680541 scopus 로고    scopus 로고
    • Analysis of the novel benzylsuccinate synthase reaction for anaerobic toluene activation based on structural studies of the product
    • Beller H.R. Spormann A.M. 1998. Analysis of the novel benzylsuccinate synthase reaction for anaerobic toluene activation based on structural studies of the product. J. Bacteriol. 180: 5454-5457. 9765580. (Pubitemid 28471545)
    • (1998) Journal of Bacteriology , vol.180 , Issue.20 , pp. 5454-5457
    • Beller, H.R.1    Spormann, A.M.2
  • 3
    • 84866029148 scopus 로고    scopus 로고
    • BGC Engineering Inc. Oil sands research and information network, University of Alberta, School of Energy and the Environment, Edmonton, Alberta. OSRIN Report No. TR-1. 136pp.
    • BGC Engineering Inc. 2010. Oil sands tailings technology review. Oil sands research and information network, University of Alberta, School of Energy and the Environment, Edmonton, Alberta. OSRIN Report No. TR-1. 136pp.
    • (2010) Oil sands tailings technology review
  • 5
    • 84876700788 scopus 로고    scopus 로고
    • Effect of calcium ions and anaerobic microbial activity on sedimentation of oil sands tailings
    • 10.1016/j.ibiod.2012.07.006.
    • Brown D. Ramos-Padrón E. Gieg L. Voordouw G. 2013. Effect of calcium ions and anaerobic microbial activity on sedimentation of oil sands tailings. Int. Biodeterior. Biodegrad. 81: 9-16. 10.1016/j.ibiod.2012.07.006.
    • (2013) Int. Biodeterior. Biodegrad. , vol.81 , pp. 9-16
    • Brown, D.1    Ramos-Padrón, E.2    Gieg, L.3    Voordouw, G.4
  • 6
    • 0036814653 scopus 로고    scopus 로고
    • Management of oil sands tailings
    • DOI 10.1081/LFT-120003695
    • Chalaturnyk R.J. Scott J.D. Özüm B. 2002. Management of oil sands tailings. Pet. Sci. Technol. 20 (9-10): 1025-1046. 10.1081/LFT-120003695. (Pubitemid 35410103)
    • (2002) Petroleum Science and Technology , vol.20 , Issue.9-10 , pp. 1025-1046
    • Chalaturnyk, R.J.1    Scott, J.D.2    Ozum, B.3
  • 7
    • 77957951370 scopus 로고    scopus 로고
    • How to make a living by exhaling methane
    • 10.1146/annurev.micro.112408.134051. 20528692.
    • Ferry J.G. 2010. How to make a living by exhaling methane. Annu. Rev. Microbiol. 64: 453-473. 10.1146/annurev.micro.112408.134051. 20528692.
    • (2010) Annu. Rev. Microbiol. , vol.64 , pp. 453-473
    • Ferry, J.G.1
  • 8
    • 35748967846 scopus 로고    scopus 로고
    • Signature of a primitive genetic code in ancient protein lineages
    • DOI 10.1007/s00239-007-9024-x
    • Fournier G.P. Gogarten J.P. 2007. Signature of a primitive genetic code in ancient protein lineages. J. Mol. Evol. 65 (4): 425-436. 10.1007/s00239-007- 9024-x. (Pubitemid 350050654)
    • (2007) Journal of Molecular Evolution , vol.65 , Issue.4 , pp. 425-436
    • Fournier, G.P.1    Gogarten, J.P.2
  • 9
    • 80054757000 scopus 로고    scopus 로고
    • Microbial degradation of aromatic compounds-from one strategy to four
    • 10.1038/nrmicro2652. 21963803.
    • Fuchs G. Boll M. Heider J. 2011. Microbial degradation of aromatic compounds-from one strategy to four. Nat. Rev. Microbiol. 9: 803-816. 10.1038/nrmicro2652. 21963803.
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 803-816
    • Fuchs, G.1    Boll, M.2    Heider, J.3
  • 10
    • 0036407322 scopus 로고    scopus 로고
    • Metabolic diversity in aromatic compound utilization by anaerobic microbes
    • DOI 10.1146/annurev.micro.56.012302.160749
    • Gibson J. Harwood C.S. 2002. Metabolic diversity in aromatic compound utilization by anaerobic microbes. Annu. Rev. Microbiol. 56: 345-369. 10.1146/annurev.micro.56.012302.160749. 12142480. (Pubitemid 35217459)
    • (2002) Annual Review of Microbiology , vol.56 , pp. 345-369
    • Gibson, J.1    Harwood, C.S.2
  • 11
    • 44249111438 scopus 로고    scopus 로고
    • Bioenergy production via microbial conversion of residual oil to natural gas
    • DOI 10.1128/AEM.00119-08
    • Gieg L.M. Duncan K.E. Suflita J.M. 2008. Bioenergy production via microbial conversion of residual oil to natural gas. Appl. Environ. Microbiol. 74: 3022-3029. 10.1128/AEM.00119-08. 18378655. (Pubitemid 351747006)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.10 , pp. 3022-3029
    • Gieg, L.M.1    Duncan, K.E.2    Suflita, J.M.3
  • 12
    • 83555176141 scopus 로고    scopus 로고
    • Evaluation of microbial biofilm communities from an Alberta oil sands tailings pond
    • 10.1111/j.1574-6941.2011.01212.x. 22029695.
    • Golby S. Ceri H. Gieg L.M. Chatterjee I. Marques L.L.R. Turner R.J. 2012. Evaluation of microbial biofilm communities from an Alberta oil sands tailings pond. FEMS Microbiol. Ecol. 79: 240-250. 10.1111/j.1574-6941.2011.01212.x. 22029695.
    • (2012) FEMS Microbiol. Ecol. , vol.79 , pp. 240-250
    • Golby, S.1    Ceri, H.2    Gieg, L.M.3    Chatterjee, I.4    Marques, L.L.R.5    Turner, R.J.6
  • 13
    • 0344011969 scopus 로고    scopus 로고
    • Biological activity in the deep subsurface and the origin of heavy oil
    • DOI 10.1038/nature02134
    • Head I.M. Jones D.M. Larter S.R. 2003. Biological activity in the deep subsurface and the origin of heavy oil. Nature, 426 (6964): 344-352. 10.1038/nature02134. 14628064. (Pubitemid 37463157)
    • (2003) Nature , vol.426 , Issue.6964 , pp. 344-352
    • Head, I.M.1    Jones, D.M.2    Larter, S.R.3
  • 14
    • 0033769565 scopus 로고    scopus 로고
    • Methanogens and sulfate-reducing bacteria in oil sands fine tailings waste
    • 10.1139/w00-081. 11068680.
    • Holowenko F.M. MacKinnon M.D. Fedorak P.M. 2000. Methanogens and sulfate-reducing bacteria in oil sands fine tailings waste. Can. J. Microbiol. 46 (10): 927-937. 10.1139/w00-081. 11068680.
    • (2000) Can. J. Microbiol. , vol.46 , Issue.10 , pp. 927-937
    • Holowenko, F.M.1    MacKinnon, M.D.2    Fedorak, P.M.3
  • 16
    • 38049143952 scopus 로고    scopus 로고
    • Crude-oil biodegradation via methanogenesis in subsurface petroleum reservoirs
    • 10.1038/nature06484. 18075503.
    • Jones D.M. Head I.M. Gray N.D. Adams J.J. Rowan A.K. Aitken C.M. et al 2008. Crude-oil biodegradation via methanogenesis in subsurface petroleum reservoirs. Nature, 451 (7175): 176-180. 10.1038/nature06484. 18075503.
    • (2008) Nature , vol.451 , Issue.7175 , pp. 176-180
    • Jones, D.M.1    Head, I.M.2    Gray, N.D.3    Adams, J.J.4    Rowan, A.K.5    Aitken, C.M.6
  • 17
    • 75749136788 scopus 로고    scopus 로고
    • Oil sands development contributes polycyclic aromatic compounds to the Athabasca river and its tributaries
    • 10.1073/pnas.0912050106. 19995964.
    • Kelly E.N. Short J.W. Schindler D.W. Hodson P.V. Ma M. Kwan A.K. Fortin B.L. 2009. Oil sands development contributes polycyclic aromatic compounds to the Athabasca river and its tributaries. Proc. Natl. Acad. Sci. U.S.A. 106: 22346-22351. 10.1073/pnas.0912050106. 19995964.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 22346-22351
    • Kelly, E.N.1    Short, J.W.2    Schindler, D.W.3    Hodson, P.V.4    Ma, M.5    Kwan, A.K.6    Fortin, B.L.7
  • 18
    • 77957991360 scopus 로고    scopus 로고
    • Oil sands development contributes elements toxic at low concentrations to the Athabasca River and its tributaries
    • 10.1073/pnas.1008754107. 20805486.
    • Kelly E.N. Schindler D.W. Hodson P.V. Short J.W. Radmanovich R. Nielsen C.C. 2010. Oil sands development contributes elements toxic at low concentrations to the Athabasca River and its tributaries. Proc. Natl. Acad. Sci. U.S.A. 107: 16178-16183. 10.1073/pnas.1008754107. 20805486.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 16178-16183
    • Kelly, E.N.1    Schindler, D.W.2    Hodson, P.V.3    Short, J.W.4    Radmanovich, R.5    Nielsen, C.C.6
  • 19
    • 0347033276 scopus 로고    scopus 로고
    • Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium
    • DOI 10.1128/AEM.69.2.760-768.2003
    • Kniemeyer O. Fischer T. Wilkes H. Glöckner F.O. Widdel F. 2003. Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium. Appl. Environ. Microbiol. 69: 760-768. 10.1128/AEM.69.2.760-768.2003. 12570993. (Pubitemid 36204801)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.2 , pp. 760-768
    • Kniemeyer, O.1    Fischer, T.2    Wilkes, H.3    Glockner, F.O.4    Widdell, F.5
  • 20
    • 0032738035 scopus 로고    scopus 로고
    • Initial reactions in anaerobic oxidation of m-xylene by the denitrifying bacterium Azoarcus sp strain T
    • Krieger C.J. Beller H.R. Reinhard M. Spormann A.M. 1999. Initial reactions in anaerobic oxidation of m-xylene by denitrifying bacterium Azoarcus sp. strain T. J. Bacteriol. 181 (20): 6403-6410. 10515931. (Pubitemid 29512951)
    • (1999) Journal of Bacteriology , vol.181 , Issue.20 , pp. 6403-6410
    • Krieger, C.J.1    Beller, H.R.2    Reinhard, M.3    Spormann, A.M.4
  • 21
    • 70449578272 scopus 로고    scopus 로고
    • Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases
    • 10.1073/pnas.0905073106. 19815533.
    • Kung J.W. Löffler C. Dörner K. Heintz D. Gallien S. Van Dorsselaer A. et al 2009. Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases. Proc. Natl. Acad. Sci. U.S.A. 106 (42): 17687-17692. 10.1073/pnas.0905073106. 19815533.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , Issue.42 , pp. 17687-17692
    • Kung, J.W.1    Löffler, C.2    Dörner, K.3    Heintz, D.4    Gallien, S.5    Van Dorsselaer, A.6
  • 23
    • 0033989161 scopus 로고    scopus 로고
    • Anaerobic toluene catabolism of Thauera aromatica: The bbs operon codes for enzymes of β oxidation of the intermediate benzylsuccinate
    • DOI 10.1128/JB.182.2.272-277.2000
    • Leuthner B. Heider J. 2000. Anaerobic toluene catabolism of Thauera aromatica: the bbs operon codes for enzymes of beta oxidation of the intermediate benzylsuccinate. J. Bacteriol. 182: 272-277. 10.1128/JB.182.2.272- 277.2000. 10629170. (Pubitemid 30030108)
    • (2000) Journal of Bacteriology , vol.182 , Issue.2 , pp. 272-277
    • Leuthner, B.1    Heider, J.2
  • 24
    • 77954709087 scopus 로고    scopus 로고
    • Mature fine tailings from oil sands processing harbour diverse methanogenic communities
    • 10.1139/W10-029. 20657616.
    • Penner T.J. Foght J.M. 2010. Mature fine tailings from oil sands processing harbour diverse methanogenic communities. Can. J. Microbiol. 56 (6): 459-470. 10.1139/W10-029. 20657616.
    • (2010) Can. J. Microbiol. , vol.56 , Issue.6 , pp. 459-470
    • Penner, T.J.1    Foght, J.M.2
  • 27
    • 78651394772 scopus 로고    scopus 로고
    • Carbon and sulfur cycling by microbial communities in a gypsum-treated oil sands tailings pond
    • 10.1021/es1028487. 21128661.
    • Ramos-Padrón E. Bordenave S. Lin S. Bhaskar I.M. Dong X. Sensen C.W. et al 2011. Carbon and sulfur cycling by microbial communities in a gypsum-treated oil sands tailings pond. Environ. Sci. Technol. 45: 439-446. 10.1021/es1028487. 21128661.
    • (2011) Environ. Sci. Technol. , vol.45 , pp. 439-446
    • Ramos-Padrón, E.1    Bordenave, S.2    Lin, S.3    Bhaskar, I.M.4    Dong, X.5    Sensen, C.W.6
  • 28
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • 10.1128/AEM.01541-09. 19801464.
    • Schloss P.D. Westcott S.L. Ryabin T. Hall J.R. Hartmann M. Hollister E.B. et al 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75: 7537-7541. 10.1128/AEM.01541-09. 19801464.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 29
    • 79959869157 scopus 로고    scopus 로고
    • Anaerobic biodegradation of longer-chain n-alkanes coupled to methane production in oil sands tailings
    • 10.1021/es200649t. 21644510.
    • Siddique T. Penner T. Semple K. Foght J.M. 2011. Anaerobic biodegradation of longer-chain n-alkanes coupled to methane production in oil sands tailings. Environ. Sci. Technol. 45: 5892-5899. 10.1021/es200649t. 21644510.
    • (2011) Environ. Sci. Technol. , vol.45 , pp. 5892-5899
    • Siddique, T.1    Penner, T.2    Semple, K.3    Foght, J.M.4
  • 30
    • 84883354914 scopus 로고    scopus 로고
    • Phoenix 2: A locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface
    • [Submitted.] 10.1016/j.jbiotec.2013.07.004.
    • Soh, J., Dong, X., Caffrey, S.M., Voordouw, G., and Sensen, C.W. 2013. Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface. J. Biotechnol. [Submitted.] 10.1016/j.jbiotec.2013. 07.004.
    • (2013) J. Biotechnol.
    • Soh, J.1    Dong, X.2    Caffrey, S.M.3    Voordouw, G.4    Sensen, C.W.5
  • 32
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121.
    • Tamura K. Peterson D. Peterson N. Stecher G. Nei M. Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. 10.1093/molbev/msr121.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 33
    • 84862791224 scopus 로고    scopus 로고
    • Anaerobic degradation of aromatic hydrocarbons
    • Edited by K.N. Timmis (Springer). Springer-Verlag Berlin, Heidelberg
    • Tierney, M., and Young, L.Y. 2010. Anaerobic degradation of aromatic hydrocarbons. In Handbook of hydrocarbon and lipid microbiology. Edited by K.N. Timmis (Springer). Springer-Verlag Berlin, Heidelberg. pp. 926-934.
    • (2010) Handbook of hydrocarbon and lipid microbiology , pp. 926-934
    • Tierney, M.1    Young, L.Y.2
  • 34
    • 84868625527 scopus 로고    scopus 로고
    • Next-generation sequencing of microbial communities in the Athabasca River and its tributaries in relation to oil sands mining activities
    • 10.1128/AEM.02036-12. 22923391.
    • Yergeau E. Lawrence J.R. Sanschagrin S. Waiser M.J. Korber D.R. Greer C.W. 2012. Next-generation sequencing of microbial communities in the Athabasca River and its tributaries in relation to oil sands mining activities. Appl. Environ. Microbiol. 78 (21): 7626-7637. 10.1128/AEM.02036-12. 22923391.
    • (2012) Appl. Environ. Microbiol. , vol.78 , Issue.21 , pp. 7626-7637
    • Yergeau, E.1    Lawrence, J.R.2    Sanschagrin, S.3    Waiser, M.J.4    Korber, D.R.5    Greer, C.W.6
  • 35
    • 0033575903 scopus 로고    scopus 로고
    • Methane formation from long chain alkanes by anaerobic microorganisms
    • 10.1038/45777. 10499582.
    • Zengler K. Richnow H.H. Rosselló-Mora R. Michaelis W. Widdel F. 1999 a. Methane formation from long chain alkanes by anaerobic microorganisms. Nature, 401: 266-269. 10.1038/45777. 10499582.
    • (1999) Nature , vol.401 , pp. 266-269
    • Zengler, K.1    Richnow, H.H.2    Rosselló-Mora, R.3    Michaelis, W.4    Widdel, F.5
  • 36
    • 0032888782 scopus 로고    scopus 로고
    • Phototrophic utilization of toluene under anoxic conditions by a new strain of Blastochloris sulfoviridis
    • DOI 10.1007/s002030050761
    • Zengler K. Heider J. Rosselló-Mora R. Widdel F. 1999 b. Phototrophic utilization of toluene under anoxic conditions by a new strain of Blastochloris sulfoviridis. Arch. Microbiol. 172: 204-212. 10.1007/ s002030050761. 10525736. (Pubitemid 29470796)
    • (1999) Archives of Microbiology , vol.172 , Issue.4 , pp. 204-212
    • Zengler, K.1    Heider, J.2    Rossello-Mora, R.3    Widdel, F.4
  • 37
    • 0030814871 scopus 로고    scopus 로고
    • Carboxylation as an initial reaction in the anaerobic metabolism of naphthalene and phenanthrene by sulfidogenic consortia
    • Zhang X. Young L.Y. 1997. Carboxylation as an initial reaction in the anaerobic metabolism of naphthalene and phenanthrene by sulfidogenic consortia. Appl. Environ. Microbiol. 63: 4759-4764. 9471963. (Pubitemid 27524208)
    • (1997) Applied and Environmental Microbiology , vol.63 , Issue.12 , pp. 4759-4764
    • Zhang, X.1    Young, L.Y.2
  • 38
    • 0034438244 scopus 로고    scopus 로고
    • Evidence for aromatic ring reduction in the biodegradation pathway of carboxylated naphthalene by a sulfate reducing consortium
    • DOI 10.1023/A:1011128109670
    • Zhang X. Sullivan E.R. Young L.Y. 2000. Evidence for aromatic ring reduction in the biodegradation pathway of carboxylated naphthalene by a sulfate-reducing consortium. Biodegradation, 11: 117-124. 10.1023/A: 1011128109670. 11440239. (Pubitemid 32539582)
    • (2000) Biodegradation , vol.11 , Issue.2-3 , pp. 117-124
    • Zhang, X.1    Sullivan, E.R.2    Young, L.Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.