Phylogeny of eriphioid crabs (Brachyura, Eriphioidea) inferred from molecular and morphological studies

Zoologica Scripta

Volumn 43, Issue 1, 2014, Pages 52-64

  Lai, Joelle C Y ^a   Thoma, Brent P ^b   Clark, Paul F ^c   Felder, Darryl L ^b   Ng, Peter K L ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b UNIVERSITY OF LOUISIANA AT LAFAYETTE   (United States)

^c DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84889608009     PISSN: 03003256     EISSN: 14636409     Source Type: Journal    
DOI: 10.1111/zsc.12030     Document Type: Article

References (76)

1. Alcock, A. (1898). Materials for a carcinological fauna of India. No. 3. The Brachyura Cyclometopa. Part I. The family Xanthidae. Journal of the Asiatic Society of Bengal, 67, 67-233.
2. Australian Department of Primary Industries, Parks, Water and Environment (2013, March). Available via http://www.dpiw.tas.gov.au/inter/nsf/WebPages/SCAN-6Q48RF?open.
3. Balss, H. (1932). Über einige systematisch interessante Xanthidae (Crustacea, Decapoda, Brachyura) der Harmsschen Reisen nach dem Sundaarchipel. Zeitschrift für Wissenschaftliche Zoologie, 142, 510-519.
4. Balss, H. (1933). Über zwei interessante Xanthidae (Crustacea Dekapoda) des Naturhistorischen Museums in Wien. Annalen des Naturhistorischen Museums in Wien, 46, 297-301.
5. Balss, H. (1957). Decapoda. In H. G. Bronns (Ed.) Klassen und Ordnungen des Tierreichs. Fünfter Band 5, Abteilung 1, Buch 7 (pp. 1505-1672). Leipzig: Akademische Verlagsgesellschaft.
6. Borradaile, L. A. (1907). On the classification of the decapod crustaceans. Annals and Magazine of Natural History, Series, 7, 457-486.
7. Bremer, K. (1988). The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution, 42, 795-803.
8. Carsen, A. E., Kleinman, S. & Scelzo, M. A. (1996). Fecundity and relative growth of the crab Platyxanthus patagonicus (Brachyura: Platyxanthidae) in Patagonia, Argentina. Journal of Crustacean Biology, 16, 748-753.
9. Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540-552.
10. Castro, P., Ng, P. K. L. & Ahyong, S. T. (2004). Phylogeny and systematics of the Trapeziidae Miers, 1886 (Crustacea: Brachyura), with the description of a new family. Zootaxa, 643, 1-70.
11. Clark, P. F. (2001). Interpreting patterns in chaetotaxy and segmentation associated with abbreviated brachyuran zoeal development. Invertebrate Reproduction and Development [2000], 38, 171-181.
12. Clark, P. F. (2005). The evolutionary significance of heterochrony in the abbreviated zoeal development of pilumnine crabs (Crustacea: Brachyura: Xanthoidea). Zoological Journal of the Linnean Society, 143, 417-446.
13. Clark, P. F. (2009). The bearing of larval morphology on brachyuran phylogeny. In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (pp. 221-241). Boca Raton, London, New York: CRC Press, Taylor & Francis Group.
14. Clark, P. F. & Guerao, G. (2008). A description of Calocarcinus africanus Calman, 1909 (Brachyura, Xanthoidea) first zoeal stage morphology with implications for Trapeziidae systematics. Proceedings of the Biological Society of Washington, 121, 475-500.
15. Clark, P. F. & Paula, J. (2003). Descriptions of ten xanthoidean (Crustacea: Decapoda: Brachyura) first stage zoeae from Inhaca Island, Mozambique. Raffles Bulletin of Zoology, 51, 323-378.
16. Dai, A.-Y. & Yang, S.-L. (1991). Crabs of the China Seas. Berlin: Springer-Verlag.
17. Dana, J. D. (1851). On the classification of the Cancroidea. Scientific Intelligence, III. Zoology. American Journal of Science and Arts Second Series, 12, 121-131.
18. Davie, P. J. F. (2002). Crustacea: Malacostraca: Eucarida (Part 2): Decapoda - Anomura, Brachyura. Zoological Catalogue of Australia, 19, xiv+636.
19. Dineen, J. F., Clark, P. F., Hines, A. H., Reed, S. A. & Walton, H. P. (2001). Life history, larval description, and natural history of Charybdis hellerii (Decapoda, Brachyura, Portunidae), an invasive crab in the western Atlantic. Journal of Crustacean Biology, 21, 774-805.
20. Farris, J. S., Albert, V. A., Källersjö, M., Lipscomb, D. & Kluge, A. G. (1996). Parsimony jackknifing outperforms neighbour-joining. Cladistics, 12, 99-124.
21. Florida Fish and Wildlife Conservation Commission (March 2013). Available via http://myfwc.com/research/saltwater/crustaceans-marine-arthropods/stone-crabs/.
22. Gardner, C. & Quintana, R. (1998). Larval development of the Australian giant crab Pseudocarcinus gigas (Lamarck, 1818) (Decapoda: Oziidae) reared in the laboratory. Journal of Plankton Research, 20, 1169-1188.
23. Guinot, D. (1967). Recherches préliminaires sur les groupements naturels chez les Crustacés Décapodes Brachyoures. III. A propos des affinités des genres Dairoides Stebbing et Daira De Haan. Bulletin du Muséum national d'Histoire naturelle, Paris, 2e série, 39, 540-563.
24. Guinot, D. (1968). Recherches préliminaires sur les groupements naturels chez les Crustacés Décapodes Brachyoures. IV. Observations sur quelques genres de Xanthidae. Bulletin du Muséum national d'Histoire naturelle, Paris, (1967), 39, 695-727.
25. Guinot, D. (1978). Principes d'une classification évolutive des Crustacés Décapodes Brachyoures. Bulletin Biologique de la France et de la Belgique, Paris, 112, 211-292.
26. Guinot, D. (1979). Données nouvelles sur la morphologie, la phylogenèse et la taxonomie des Crustacés Décapodes Brachyoures. Mémoires du Muséum national d'Histoire naturelle, Paris, (A) Zoologie, 112, 1-354.
27. Guinot-Dumortier, D. (1959) Les espéces indo-pacifiques du genre Globopilumnus (Crustacea Brachyura Xanthidae). Mémoires de l'Institut scientifique de Madagascar (F), 3, 97-118.
28. Hasegawa, M., Kishino, H. & Yano, T. (1985). Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22, 160-174.
29. Karasawa, H. & Schweitzer, C. (2006). A new classification of the Xanthoidea sensu lato (Crustacea: Decapoda: Brachyura) based on phylogenetic analysis and traditional systematics and evaluation of all fossil Xanthoidea sensu lato. Contributions to Zoology, 75, 23-73.
30. Katoh, K. & Toh, H. (2008). Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics, 9, 286-298.
31. Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066.
32. Koh, S. K. & Ng, P. K. L. (2000). A revision of the shore crabs of the genus Hypothalassia Gistel, 1848 (Crustacea: Decapoda: Brachyura: Eriphiidae). Raffles Bulletin of Zoology, 48, 123-141.
33. Koh, S. K. & Ng, P. K. L. (2008). A revision of the shore crabs of the genus Eriphia Latreille, 1817 (Crustacea: Decapoda: Brachyura: Eriphiiidae). Raffles Bulletin of Zoology, 56, 327-355.
34. Lai, J. C. Y., Mendoza, J. C., Guinot, D., Clark, P. F. & Ng, P K. L. (2011). Xanthidae MacLeay, 1838 (Decapoda: Brachyura: Xanthoidea) systematics: a multi-gene approach with support from adult and zoeal morphology. Zoologischer Anzeiger, 250, 407-448.
35. MacLeay, W. S. (1838). On the Brachyurous Decapod Crustacea. Brought from the Cape by Dr. Smith. Illustrations of the Zoology of South Africa; consisting chiefly of figures and descriptions of the objects of natural history collected during an expedition into the interior of South Africa, in the years 1834, 1835, and 1836; fitted out by "The Cape of Good Hope Association for Exploring Central Africa." together with a summary of African Zoology, and an inquiry into the geographical ranges of species in that quarter of the globe, Published under the Authority of the Lords Commissioners of Her Majesty's Treasury, Invertebratae. A. Smith. London, Smith, Elder and Co.: [1849] IV: 53-71, pls 2, 3. [For dates of publication see Waterhouse 1880: 489-491].
36. Maddison, D. R. & Maddison, W. P. (2000). 'MacClade. Analysis of Phylogeny and Character Evolution. Version 4.0.' Sunderland, Massachusetts: Sinauer Associates.
37. Manuel-Santos, M. R. & Ng, P. K. L. (2007). On the genus Ladomedaeus Števčić, 2005, from the Philippines and Japan, and the status of the Ladomedaeidae Števčić, 2005 (Decapoda: Brachyura: Xanthoidea). Raffles Bulletin of Zoology, Suppl 16, 177-185.
38. Martin, J. W. (1984). Notes and bibliography on the larvae of xanthid crabs, with a key to the known xanthid zoeae of the western Atlantic and Gulf of Mexico. Bulletin of Marine Science, 34, 220-239.
39. Martin, J. W. (1988). Phylogenetic significance of the brachyuran megalopa: evidence from the Xanthidae. Symposia of the Zoological Society of London, 59, 69-102.
40. Martin, J. W. & Davis, G. E. (2001). An updated classification of the Recent Crustacea. Natural History Museum of Los Angeles County, Science Series, 39, 1-124.
41. Mendoza, J. C. E. & Guinot, D. (2011). Revision of the genus Glyptoxanthus A. Milne-Edwards, 1879, and establishment of Glyptoxanthinae nov. subfam. (Crustacea: Decapoda: Brachyura: Xanthidae). Zootaxa, 3015, 29-51.
42. Mendoza, J. C. E. & Manuel-Santos, M. R. (2012). Revision of Garthiella Titgen, 1986 (Crustacea: Decapoda: Brachyura: Xanthidae), with description of a new subfamily and a new species from the central Philippines. Zootaxa, 3446, 32-48.
43. Miller, M. A., Pfeiffer, W. & Schwartz, T. (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE) New Orleans, LA. pp. 1-8.
44. Milne Edwards, H. (1834). Histoire naturelle des Crustacés, comprenant l'anatomie, la physiologie et la classification de ces animaux. Paris: Roret.
45. Narvarte, M., González, R., Osovnikar, P., Camarero, M., Curtolo, L. & Reinaldo, M.O. (2007). Experimental trap fishery for the crabs Platyxanthus patagonicus and Ovalipes trimaculatus in the San Matías Gulf, Patagonia, Argentina. Journal of the Marine Biological Association of the UK, 87, 1235-1242.
46. Ng, P. K. L. (1992). The Indo-Pacific Pilumnidae VIII. Pilumnus laciniatus Sakai, 1980 a senior synonym of Globopilumnus multituberosus Garth & Kim, 1983 (Crustacea: Decapoda: Brachyura). Crustaceana, 63, 221-222.
47. Ng, P. K. L. (1998). Crabs. In K. E., Carpenter & V. H. Niem (Eds) FAO species identification guide for fishery purposes. The living marine resources of the Western Central Pacific. Volume 2. Cephalopods, crustaceans, holothurians and sharks. (pp. 1045-1155). Rome: FAO.
48. Ng, P. K. L. & Clark, P. F. (2000). The Indo-Pacific Pilumnidae XII. On the familial placement of Chlorodiella bidentata (Nobili, 1901) and Tanaocheles stenochilus Kropp, 1984 using adult and larval characters with the establishment of a new subfamily, Tanaochelinae (Crustacea: Decapoda: Brachyura). Journal of Natural History, 34, 207-245.
49. Ng, P. K. L. & Liao, L. (2002). On a new species of Euryozius Miers, 1886 (Crustacea: Decapoda: Brachyura: Pseudoziidae) from the Philippines, with notes on the taxonomy of the genus. Proceedings of the Biological Society of Washington, 115, 585-593.
50. Ng, P. K. L. & Rodríguez, G. (1986). New records of Mimilambrus wileyi Williams, 1979 (Crustacea: Decapoda: Brachyura), with notes on the systematics of the Mimilambridae Williams, 1979 and Parthenopoidea MacLeay, 1838 sensu Guinot, 1978. Proceedings of the Biological Society of Washington, 99, 88-99.
51. Ng, P. K. L. & Tan, L. W. H. (1984). The 'shell peeling' structure of the box crab Calappa philargius (L.) and other crabs in relation to mollusc shell architecture. Journal of the Singapore National Academy of Science, 13, 195-199.
52. Ng, P. K. L. & Tan, L. W. H. (1985). Right Handedness' in heterochelous calappoid and xanthoid crabs - suggestion for a functional advantage. Crustaceana, 49, 98-100.
53. Ng, P. K. L., Wang, C.-H., Ho, P.-H. & Shih, H.-T. (2001). An annotated checklist of brachyuran crabs from Taiwan (Crustacea: Decapoda). National Taiwan Museum Special Publication Series, 11, Iv+86.
54. Ng, P. K. L., Guinot, D. & Davie, P. (2008). Systema Brachyurorum: Part I. An annotated checklist of extant brachyuran crabs of the world. Raffles Bulletin of Zoology, 17, 1-286.
55. Nylander, J. A. A. (2004). MrModeltest v2. Program Distributed by the Author. Evolutionary Biology Centre: Uppsala University.
56. Ortmann, A. (1893). Die Decapoden-Krebse des Strassburger Museums. VII. Theil. Abtheilung: Brachyura (Brachyura genuina Boas) II. Unterabtheilung: Cancroidea, 2. Section: Cancrinea, 1. Gruppe: Clyclometopa. Zoologische Jahrbücher. Jena. Abteilung für Systematik, 7, 411-495.
57. Rodríguez, F., Oliver, J. L., Marín, A. & Medina, J. R. (1990). The general stochastic model of nucleotide substitution. Journal of Theoretical Biology, 142, 485-501.
58. Ronquist, F. & Huelsenbeck, J. P. (2003). MrBayes version 3.0: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
59. Saba, M., Takeda, M. & Nakasone, Y. (1978). Larval development of Epixanthus dentatus (White, 1847). Bulletin of the National Science Museum, Tokyo Series A (Zoology), 4, 151-161.
60. Sakai, T. (1976). Crabs of Japan and the Adjacent Seas. Tokyo: Kodansha Ltd.
61. Serène, R. (1984). Crustacés Décapodes Brachyoures de l'Océan Indien occidental et de la Mer Rouge, Xanthoidea: Xanthidae et Trapeziidae. Avec un addendum par Crosnier, A.: Carpilliidae et Menippidae. Faune Tropicale, 24, 1-400.
62. Sorenson, M. D. & Franzosa, E. A. (2007). TreeRot, version 3. Boston, MA: Boston University.
63. Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
64. Stamatakis, A., Hoover, P. & Rougemont, J. (2008). A rapid bootstrap algorithm for the RaxML web servers. Systematic Biology, 57, 758-771.
65. Števčić, Z. (2005). The reclassification of brachyuran crabs (Crustacea: Decapoda: Brachyura). Natura Croatica, 1, 1-159.
66. Swofford, D. L. (2002). 'PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4.0b10. Sunderland, Massachusetts, USA: Sinauer Associates.
67. Tavaré, S. (1986). Some probabilistic and statistical problems in the analysis of DNA sequences. Some Mathematical Questions in Biology-DNA Sequence Analysis, 17, 57-86.
68. Thoma, B. P., Schubart, C. D. & Felder, D. L. (2009). Molecular phylogeny of western Atlantic representatives of the genus Hexapanopeus (Decapoda: Brachyura: Panopeidae). In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (pp. 551-565). Boca Raton, London, New York: CRC Press, Taylor & Francis Group.
69. Thoma, B. P., Ng, P. K. L. & Felder, D. L. (2012). Review of the family Platyxanthidae Guinot, 1977 (Crustacea, Decapoda, Brachyura, Eriphioidea), with the description of a new genus and a key to genera and species. Zootaxa, 3498, 1-23.
70. Vaidya, G., Lohman, D. J. & Meier, R. (2011). SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics, 27, 171-180.
71. Wear, R. G. (1968). Life-history studies on New Zealand Brachyura 2. Family Xanthidae. Larvae of Heterozius rotundifrons A. Milne Edwards, 1867, Ozius truncatus H. Milne Edwards, 1834 and Heteropanope (Pilumnopeus) serratifrons (Kinahan, 1856). New Zealand Journal of Marine and Freshwater Research, 2, 293-332.
72. Wear, R. G. & Fielder, D. R. (1985). The marine fauna of New Zealand: Larvae of the Brachyura (Crustacea, Decapoda). New Zealand Oceanographic Institute Memoir, 92, 1-90.
73. Wetzer, R., Martin, J. W. & Trautwein, S. E. (2003). Phylogenetic relationships within the coral crab genus Carpilius (Brachyura, Xanthoidea, Carpiliidae) and of the Carpiliidae to other xanthoid crab families based on molecular sequence data. Molecular Phylogenetics and Evolution, 27, 410-421.
74. Xia, X. & Xie, Z. (2001). DAMBE: data analysis in molecular biology and evolution. Journal of Heredity, 92, 371-373.
75. Xia, X., Xie, Z., Salemi, M., Chen, L. & Wang, Y. (2003). An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26, 1-7.
76. Zharkikh, A. (1994). Estimation of evolutionary distances between nucleotide sequences. Journal of Molecular Evolution, 39, 315-329.