Theoretical and Biological Foundations of Plant Breeding

Plant Breeding: The Arnel R. Hallauer International Symposium

Volumn , Issue , 2008, Pages 127-140

  Holland, J B ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Biological foundations; Gene function; Gene regulation; Metabolic interactions; Plant breeding

Indexed keywords

EID: 84889265588     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470752708.ch9     Document Type: Chapter

References (57)

1. Allard, R.W. 1960. Principles of plant breeding. Wiley, New York.
2. Baker, R.J. 1984. Quantitative genetic principles in plant breeding. p. 147-176. Proceedings of the 16th Stadler Genetics Symposium. University of Missouri Agricultural Experiment Station, Columbia.
3. Bernardo, R. 1996. Best linear unbiased prediction of maize single-cross performance. Crop Sci. 36:50-56.
4. Borges, J.L. 1998. On exactitude in science. p. 325. In A. Hurley (ed.), Collected Fictions. Viking, New York.
5. Carlson, J.M., and J. Doyle. 2002. Complexity and robustness. Proc. Nat. Acad. Sci. 99:2538-2545.
6. Cheverud, J., and E. Routman. 1996. Epistasis as a source of increased additive genetic variance at population bottlenecks. Evol. 50:1042-1051.
7. Cheverud, J.M., and E.J. Routman. 1995. Epistasis and its contribution to genetic variance components. Genet. 139:1455-1461.
8. Cockerham, C.C. 1971. Higher order probability functions of identity of alleles by descent. Genet. 69:235-246.
9. Cockerham, C.C. 1983. Covariances of relatives from selffertilization. Crop Sci. 23:1177-1180.
10. Cockerham, C.C., and D.F.Matzinger. 1985. Selection response based on selfed progenies. Crop Sci. 25:483-488.
11. Cockerham, C.C., and Z.-B. Zeng. 1996. Design III with marker loci. Genet. 143:1437-1456.
12. Cooper, M., and D.W. Podlich. 2002. The E(NK) model:Extending the NK model to incorporate gene-by-environment interactions and epistasis for diploid genomes. Complexity 7:31-47.
13. Coors, J.G. 1988. Response to four cycles of combined half-sib and S1 family selection in maize. Crop Sci. 28:891-896.
14. Darwin, C. 1872. The origin of species by means of natural selection. 6th Ed. John Murray, London.
15. Davidson, E.H., J.P. Rast, P. Oliveri, A. Rasnick, C. Calestani, C.-H. Yuh, T. Minokawa, G. Amore, V. Hinman, C. Arenas-Mena, O. Otim, C.T. Brown, C.B. Livi, P.Y. Lee, R. Revilla, A.G. Rust, Z.J. Pan, M.J. Schilstra, P.J.C. Clarke, M.I. Arnone, L. Rowen, R.A. Cameron, D.R. McClay, L. Hood, and H. Bolouri. 2002. A genomic regulatory network for development. Science 295:1669-1678.
16. Dias, A.P., E.L. Braun, M.D.McMullen, and E. Grotewold. 2003. Recently duplicated maize R2R3 myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiol. 131:610-620.
17. Dudley, J.W. 1997. Quantitative genetics and plant breeding. Advances in Agronomy 59:1-23.
18. Edwards, J.E., and K.R. Lamkey. 2002. Quantitative genetics of inbreeding in a synthetic maize population. Crop Sci. 42:1094-1104.
19. Falconer, D.S., and T.F.C. Mackay. 1996. Introduction to quantitative genetics, 4th ed. Longman Technical, Essex, U.K.
20. Frank, S.A. 1999. Population and quantitative genetics of regulatory networks. J. Theor. Biol. 197:281-294.
21. Franken, P., U.Niesbach-Klosgen, U.Weydemann, L.Marechal-Drouard, H. Saedler, and U.Wienand. 1991. The duplicated chalcone synthase genes C2 and Whp (white pollen) of Zea mays are independently regulated; evidence for translational control of Whp expression by the anthocyanin intensifying gene in. EMBO J. 10:2605-2612.
22. Frary, A., T.C. Nesbitt, A. Frary, S. Grandillo, E. van der Knapp, B. Cong, J. Liu, J. Meller, R. Elber, K.B. Alpert, and S.D. Tanksley. 2000. fw2.2: A quantitative trait locus key to the evolution of tomato fruit size. Science 289:85-87.
23. Fridman, E., T. Pleban, and D. Zamir. 2000. A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484 bp within an invertase gene. Proc. Nat. Acad. Sci. 97:4718-4723.
24. Gibson, G. 1996. Epistasis and pleiotropy as natural properties of transcriptional regulation. Theor. Pop. Biol. 49:58-89.
25. Hallauer, A.R., and J.B.Miranda. 1988. Quantitative genetics in maize breeding. 2nd Edition. Iowa State Univ. Press, Ames, IA.
26. Helms, T.C., A.R. Hallauer, and O.S. Smith. 1989. Genetic drift and selection evaluated from recurrent selection programs in maize. Crop Sci. 29:602-607.
27. Henderson, C.R. 1974. General flexibility of linear model techniques for sire evaluation. J. Dairy Sci. 57:963-972.
28. Holland, J.B. 2001. Epistasis and plant breeding. Plant Breed. Rev. 21:27-92.
29. Holland, J.B., Å. Bjørnstad, K.J. Frey, M. Gullord, D.M. Wesenberg, and T. Buraas. 2000. Recurrent selection in oat for adaptation to diverse environments. Euphytica 113:195-205.
30. Holland, J.B.,W.E.Nyquist, and C.T. Cervantes-Martinez. 2003. Estimating and interpreting heritability for plant breeding:An update. p. 9-111. In J. Janick (ed.), Plant Breeding Reviews.Wiley, New York.
31. Holton, T.A., and E.C. Cornish. 1995. Genetics and biochemistry of anthocyanin biosynthesis. Plant Cell 7:1071-1083.
32. Kauffman, S.A. 1993. The origins of order. Oxford Univ. Press, Oxford, U.K.
33. Lamkey, K.R. 1992. Fifty years of recurrent selection in the Iowa stiff stalk synthetic maize population. Maydica 37:19-28.
34. Lamkey, K.R., and A.R. Hallauer. 1987. Heritability estimated from recurrent selection experiments in maize. Maydica 32:61-78.
35. Lynch, M. 2000. The limits to knowledge in quantitative genetics. p. 225-237. In M.T. Clegg, M.K. Hecht, and R.J. MacIntyre (ed.), Evolutionary Biology. Vol. 32. Kluwer Academic/Plenum Publishers, New York.
36. Lynch, M., M. O'Hely, B.Walsh, and A. Force. 2001. The probability of preservation of a newly arisen gene duplicate. Genet. 159:1789-1804.
37. Martienssen, R. 1999. Copying out our ABCs: The role of gene redundancy in interpreting genetic hierarchies. Trends Genet. 15:435-437.
38. Mather, K., and J.L. Jinks. 1977. Introduction to biometrical genetics. Cornell Univ. Press, Ithaca, NY.
39. Mayr, E. 1982. The growth of biological thought. Harvard University Press, Cambridge, MA.
40. McMullen, M.D., P.F. Byrne, M.E. Snook, B.R. Wiseman, E.A. Lee, N.W. Widstrom, and E.H. Coe. 1998. Quantitative trait loci and metabolic pathways. Proc. Nat. Acad. Sci. (USA) 95:1996-2000.
41. McMullen, M.D., M. Snook, A.E. Lee, P.F. Byrne, H. Kross, T.A. Musket, K. Houchins, and E.H.J. Coe. 2001. The biological basis of epistasis between quantitative trait loci for flavone and 3-deoxyanthocyanin synthesis in maize (Zea mays L.). Gen. 44:667-676.
42. Omholt, S.W., E. Plahte, L. Oyehaug, and K. Xiang. 2000. Gene regulatory networks generating the phenomena of additivity, dominance, and epistasis. Genet. 155:969-980.
43. Panter, D.M., and F.L. Allen. 1995. Using best linear unbiased predictions to enhance breeding for yield in soybean: I. Choosing parents. Crop Sci. 35:397-405.
44. Pickett, F.B., and D.R. Meeks-Wagner. 1995. Seeing double:Appreciating genetic redundancy. Plant Cell 7:1347-1356.
45. Podlich, D.W., and M. Cooper. 1998. QU-GENE: A simulation platform for quantitative analysis of genetic models. Bioinformatics 14:632-653.
46. Queitsch, C., T.A. Sanger, and S. Lindquist. 2002. Hsp90 as a capacitor of phenotypic variation. Nat. 417:618-624.
47. Rasmusson, D.C., and R.L. Phillips. 1997. Plant breeding programs and genetic diversity from de novo variation and elevated epistasis. Crop Sci. 37:303-310.
48. Rutherford, S.L., and S. Lindquist. 1998. Hsp90 as a capacitor for morphological evolution. Nat. 396:336-342.
49. Simmonds, N.W. 1984. Gene manipulation and plant breeding. p. 637-654. Proceedings of the 16th Stadler Genetics Symposium. University of Missouri Agricultural Experiment Station, Columbia.
50. Szalma, S.J., M.J. Snook, B.S. Bushman, K.E. Houchins, and M.D. McMullen. 2002. Duplicate loci as QTL: The role of chalcone synthase loci in flavone and phenylpropanoid biosynthesis in maize. Crop Sci. 42:1679-1687.
51. The Arabidopsis Genome Initiative. 2001. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nat. 408:196-815.
52. Tolstoy, L. 1962. War and Peace, Vol. 2. Heritage Press, New York.
53. Wang, R.-L., A. Stec, J.Hey, L. Lukens, and J. Doebley. 1999. The limits of selection during maize domestication. Nature 398:236-239.
54. Weir, B.S., and C.C. Cockerham. 1977. Two-locus theory in quantitative genetics. p. 247-269. In E. Pollack, O. Kempthorne, and T.B. Bailey, Jr. (ed.). Proc. First International Conference on Quantitative Genetics, Ames, IA. August 16-21, 1976. Iowa State Univ. Press, Ames, IA.
55. Weyhrich, R.A., K.R. Lamkey, and A.R. Hallauer. 1998a. Effective population size and response to S1-progeny selection in the BS11 maize population. Crop Sci. 38:1149-1158.
56. Weyhrich, R.A., K.R. Lamkey, and A.R. Hallauer. 1998b. Responses to seven methods of recurrent selection in the BS11 maize population. Crop Sci. 38:308-321.
57. Yuh, C.-H., H. Bolouri, and E.H. Davidson. 1998. Genomic cisregulatory logic: Experimental and computational analysis of a sea urchin gene. Science 279:1896-1902.