메뉴 건너뛰기




Volumn 94, Issue 2, 2014, Pages 163-168

Bifidobacteria and humans: Our special friends, from ecological to genomics perspectives

Author keywords

Bifidobacteria; Genomics; Host microbe cross talk

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 84889096076     PISSN: 00225142     EISSN: 10970010     Source Type: Journal    
DOI: 10.1002/jsfa.6356     Document Type: Review
Times cited : (91)

References (42)
  • 3
    • 79958240247 scopus 로고    scopus 로고
    • Bifidobacterium actinocoloniiforme sp. nov. and Bifidobacterium bohemicum sp. nov., from the bumblebee digestive tract
    • Killer J, Kopecny J, Mrazek J, Koppova I, Havlik J, Benada O, et al, Bifidobacterium actinocoloniiforme sp. nov. and Bifidobacterium bohemicum sp. nov., from the bumblebee digestive tract. Int J Syst Evol Microbiol 61:1315-1321 (2011).
    • (2011) Int J Syst Evol Microbiol , vol.61 , pp. 1315-1321
    • Killer, J.1    Kopecny, J.2    Mrazek, J.3    Koppova, I.4    Havlik, J.5    Benada, O.6
  • 5
    • 71449098853 scopus 로고    scopus 로고
    • Lactobacillus and Bifidobacterium diversity in horse feces, revealed by PCR-DGGE
    • Endo A, Futagawa-Endo Y and Dicks LM, Lactobacillus and Bifidobacterium diversity in horse feces, revealed by PCR-DGGE. Curr Microbiol 59:651-655 (2009).
    • (2009) Curr Microbiol , vol.59 , pp. 651-655
    • Endo, A.1    Futagawa-Endo, Y.2    Dicks, L.M.3
  • 6
    • 0031790825 scopus 로고    scopus 로고
    • Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences
    • Miyake T, Watanabe K, Watanabe T and Oyaizu H, Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences. Microbiol Immunol 42:661-667 (1998).
    • (1998) Microbiol Immunol , vol.42 , pp. 661-667
    • Miyake, T.1    Watanabe, K.2    Watanabe, T.3    Oyaizu, H.4
  • 8
    • 84892801172 scopus 로고    scopus 로고
    • Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective
    • O'Toole PW
    • Turroni F, Ventura M, Butto LF, Duranti S, O'Toole PW, Motherway MO, et al, Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective. Cell Mol Life Sci (2013).
    • (2013) Cell Mol Life Sci
    • Turroni, F.1    Ventura, M.2    Butto, L.F.3    Duranti, S.4    Motherway, M.O.5
  • 10
    • 34247592087 scopus 로고    scopus 로고
    • Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria
    • Ventura M, Canchaya C, Fitzgerald GF, Gupta RS and van Sinderen D, Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria. Antonie Van Leeuwenhoek 91:351-372 (2007).
    • (2007) Antonie Van Leeuwenhoek , vol.91 , pp. 351-372
    • Ventura, M.1    Canchaya, C.2    Fitzgerald, G.F.3    Gupta, R.S.4    van Sinderen, D.5
  • 11
    • 33645900573 scopus 로고    scopus 로고
    • Towards understanding molecular modes of probiotic action
    • Marco ML, Pavan S and Kleerebezem M, Towards understanding molecular modes of probiotic action. Curr Opin Biotechnol 17:204-210 (2006).
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 204-210
    • Marco, M.L.1    Pavan, S.2    Kleerebezem, M.3
  • 13
    • 84861773125 scopus 로고    scopus 로고
    • Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut
    • Ventura M, Turroni F and van Sinderen D, Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut. Bioeng Bugs 3:73-79 (2012).
    • (2012) Bioeng Bugs , vol.3 , pp. 73-79
    • Ventura, M.1    Turroni, F.2    van Sinderen, D.3
  • 14
    • 0037195083 scopus 로고    scopus 로고
    • The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
    • Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, et al, The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci U S A 99:14422-14427 (2002).
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14422-14427
    • Schell, M.A.1    Karmirantzou, M.2    Snel, B.3    Vilanova, D.4    Berger, B.5    Pessi, G.6
  • 15
    • 45749094143 scopus 로고    scopus 로고
    • Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth
    • Lee JH, Karamychev VN, Kozyavkin SA, Mills D, Pavlov AR, Pavlova NV, et al, Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth. BMC Genomics 9:247 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 247
    • Lee, J.H.1    Karamychev, V.N.2    Kozyavkin, S.A.3    Mills, D.4    Pavlov, A.R.5    Pavlova, N.V.6
  • 16
    • 57749113201 scopus 로고    scopus 로고
    • The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
    • Sela DA, Chapman J, Adeuya A, Kim JH, Chen F, Whitehead TR, et al, The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. Proc Natl Acad Sci U S A 105:18964-18969 (2008).
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 18964-18969
    • Sela, D.A.1    Chapman, J.2    Adeuya, A.3    Kim, J.H.4    Chen, F.5    Whitehead, T.R.6
  • 17
    • 78650609691 scopus 로고    scopus 로고
    • Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging
    • Turroni F, Bottacini F, Foroni E, Mulder I, Kim JH, Zomer A, et al, Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A 107:19514-19519 (2010).
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 19514-19519
    • Turroni, F.1    Bottacini, F.2    Foroni, E.3    Mulder, I.4    Kim, J.H.5    Zomer, A.6
  • 18
    • 79960586903 scopus 로고    scopus 로고
    • Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor
    • O'Connell Motherway M, Zomer A, Leahy SC, Reunanen J, Bottacini F, Claesson MJ, et al, Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A 108:11217-11222 (2011).
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 11217-11222
    • O'Connell Motherway, M.1    Zomer, A.2    Leahy, S.C.3    Reunanen, J.4    Bottacini, F.5    Claesson, M.J.6
  • 19
    • 67649397594 scopus 로고    scopus 로고
    • Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04
    • Barrangou R, Briczinski EP, Traeger LL, Loquasto JR, Richards M, Horvath P, et al, Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04. J Bacteriol 191:4144-4151 (2009).
    • (2009) J Bacteriol , vol.191 , pp. 4144-4151
    • Barrangou, R.1    Briczinski, E.P.2    Traeger, L.L.3    Loquasto, J.R.4    Richards, M.5    Horvath, P.6
  • 20
    • 58649117988 scopus 로고    scopus 로고
    • Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011
    • Kim JF, Jeong H, Yu DS, Choi SH, Hur CG, Park MS, et al, Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011. J Bacteriol 191:678-679 (2009).
    • (2009) J Bacteriol , vol.191 , pp. 678-679
    • Kim, J.F.1    Jeong, H.2    Yu, D.S.3    Choi, S.H.4    Hur, C.G.5    Park, M.S.6
  • 21
    • 74249117479 scopus 로고    scopus 로고
    • The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity
    • Ventura M, Turroni F, Zomer A, Foroni E, Giubellini V, Bottacini F, et al, The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet 5:e1000785 (2009).
    • (2009) PLoS Genet , vol.5
    • Ventura, M.1    Turroni, F.2    Zomer, A.3    Foroni, E.4    Giubellini, V.5    Bottacini, F.6
  • 23
    • 57649155060 scopus 로고    scopus 로고
    • Association between Bifidobacteriaceae and the clinical severity of root caries lesions
    • Mantzourani M, Fenlon M and Beighton D, Association between Bifidobacteriaceae and the clinical severity of root caries lesions. Oral Microbiol Immunol 24:32-37 (2009).
    • (2009) Oral Microbiol Immunol , vol.24 , pp. 32-37
    • Mantzourani, M.1    Fenlon, M.2    Beighton, D.3
  • 24
    • 84866673240 scopus 로고    scopus 로고
    • Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut
    • Bottacini F, Milani C, Turroni F, Sanchez B, Foroni E, Duranti S, et al, Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One 7:e44229 (2012).
    • (2012) PLoS One , vol.7
    • Bottacini, F.1    Milani, C.2    Turroni, F.3    Sanchez, B.4    Foroni, E.5    Duranti, S.6
  • 26
    • 0036730363 scopus 로고    scopus 로고
    • Genomotyping: comparative bacterial genomics using arrays
    • Clewley JP, Genomotyping: comparative bacterial genomics using arrays. Commun Dis Public Health/PHLS 5:258-259 (2002).
    • (2002) Commun Dis Public Health/PHLS , vol.5 , pp. 258-259
    • Clewley, J.P.1
  • 27
    • 78649698242 scopus 로고    scopus 로고
    • Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization
    • LoCascio RG, Desai P, Sela DA, Weimer B and Mills DA, Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization. Appl Environ Microbiol 76:7373-7381 (2010).
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7373-7381
    • LoCascio, R.G.1    Desai, P.2    Sela, D.A.3    Weimer, B.4    Mills, D.A.5
  • 28
    • 84871862182 scopus 로고    scopus 로고
    • Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach
    • Duranti S, Turroni F, Milani C, Foroni E, Bottacini F, Dal Bello F, et al, Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach. Appl Environ Microbiol 79:336-346 (2013).
    • (2013) Appl Environ Microbiol , vol.79 , pp. 336-346
    • Duranti, S.1    Turroni, F.2    Milani, C.3    Foroni, E.4    Bottacini, F.5    Dal Bello, F.6
  • 30
    • 22144490199 scopus 로고    scopus 로고
    • An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
    • Mazmanian SK, Liu CH, Tzianabos AO and Kasper DL, An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122:107-118 (2005).
    • (2005) Cell , vol.122 , pp. 107-118
    • Mazmanian, S.K.1    Liu, C.H.2    Tzianabos, A.O.3    Kasper, D.L.4
  • 31
    • 6944225464 scopus 로고    scopus 로고
    • Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation
    • Kuwahara T, Yamashita A, Hirakawa H, Nakayama H, Toh H, Okada N, et al, Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation. Proc Natl Acad Sci U S A 101:14919-14924 (2004).
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 14919-14924
    • Kuwahara, T.1    Yamashita, A.2    Hirakawa, H.3    Nakayama, H.4    Toh, H.5    Okada, N.6
  • 34
    • 84857128238 scopus 로고    scopus 로고
    • Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection
    • Fanning S, Hall LJ, Cronin M, Zomer A, MacSharry J, Goulding D, et al, Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci U S A 109:2108-2113 (2012).
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 2108-2113
    • Fanning, S.1    Hall, L.J.2    Cronin, M.3    Zomer, A.4    MacSharry, J.5    Goulding, D.6
  • 36
    • 80052194287 scopus 로고    scopus 로고
    • Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium
    • Foroni E, Serafini F, Amidani D, Turroni F, He F, Bottacini F, et al, Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium. Microbial Cell Factories 10(Suppl 1):S16 (2011).
    • (2011) Microbial Cell Factories , vol.10 , Issue.SUPPL 1
    • Foroni, E.1    Serafini, F.2    Amidani, D.3    Turroni, F.4    He, F.5    Bottacini, F.6
  • 38
    • 33745217596 scopus 로고    scopus 로고
    • A serpin from the gut bacterium Bifidobacterium longum inhibits eukaryotic elastase-like serine proteases
    • Ivanov D, Emonet C, Foata F, Affolter M, Delley M, Fisseha M, et al, A serpin from the gut bacterium Bifidobacterium longum inhibits eukaryotic elastase-like serine proteases. J Biol Chem 281:17246-17252 (2006).
    • (2006) J Biol Chem , vol.281 , pp. 17246-17252
    • Ivanov, D.1    Emonet, C.2    Foata, F.3    Affolter, M.4    Delley, M.5    Fisseha, M.6
  • 39
  • 41
    • 84881478467 scopus 로고    scopus 로고
    • Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing
    • Kim SW, Suda W, Kim S, Oshima K, Fukuda S, Ohno H, et al, Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing. DNA Res 20:241-253 (2013).
    • (2013) DNA Res , vol.20 , pp. 241-253
    • Kim, S.W.1    Suda, W.2    Kim, S.3    Oshima, K.4    Fukuda, S.5    Ohno, H.6
  • 42
    • 80054960299 scopus 로고    scopus 로고
    • The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
    • McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, et al, The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci Translat Med 3:1-26 (2011).
    • (2011) Sci Translat Med , vol.3 , pp. 1-26
    • McNulty, N.P.1    Yatsunenko, T.2    Hsiao, A.3    Faith, J.J.4    Muegge, B.D.5    Goodman, A.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.