메뉴 건너뛰기




Volumn 1009, Issue , 2012, Pages 161-174

Genomic approaches to unveil the physiological pathways activated in Arabidopsis treated with plant-derived raw extracts

Author keywords

ABA; Biostimulants; Microarrays

Indexed keywords


EID: 84889076456     PISSN: 05677572     EISSN: None     Source Type: Book Series    
DOI: None     Document Type: Conference Paper
Times cited : (17)

References (49)
  • 1
    • 0036007675 scopus 로고    scopus 로고
    • DNA microarrays for functional plant genomics
    • Aharoni, A. and Vorst, O. 2002. DNA microarrays for functional plant genomics. Plant Molecular Biology 48:99-118
    • (2002) Plant Molecular Biology , vol.48 , pp. 99-118
    • Aharoni, A.1    Vorst, O.2
  • 2
    • 77949492929 scopus 로고    scopus 로고
    • The heat-inducible transcription factor HsfA2 enhances anoxia tolerance in
    • Banti, V., Mafessoni, F. et al. 2010. The heat-inducible transcription factor HsfA2 enhances anoxia tolerance in Arabidopsis. Plant Physiol. 152(3):1471-83
    • (2010) Arabidopsis. Plant Physiol , vol.152 , Issue.3 , pp. 1471-1483
    • Banti, V.1    Mafessoni, F.2
  • 3
    • 0037800440 scopus 로고    scopus 로고
    • The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in
    • Brady, S.M., Sarkar, S.F., Bonetta, D. and McCourt, P. 2003. The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. The Plant Journal 34:67-75
    • (2003) Arabidopsis. The Plant Journal , vol.34 , pp. 67-75
    • Brady, S.M.1    Sarkar, S.F.2    Bonetta, D.3    McCourt, P.4
  • 4
    • 0031081346 scopus 로고    scopus 로고
    • Plant responses to water deficit
    • Bray, E.A. 1997. Plant responses to water deficit. Trends in Plant Science 2:48-54
    • (1997) Trends in Plant Science , vol.2 , pp. 48-54
    • Bray, E.A.1
  • 5
    • 1042267603 scopus 로고    scopus 로고
    • The arabidopsis thaliana abscisic acid-insensitive8 locus encodes a novel protein mediating abscisic acid and sugar responses essential for growth
    • Brocard-Gifford, I., Lynch, T.J., Garcia, M.E., Malhotra, B. and Finkelstein, R.R. 2004. The Arabidopsis thaliana ABSCISIC ACID-INSENSITIVE8 locus encodes a novel protein mediating abscisic acid and sugar responses essential for growth. The Plant Cell Online 16:406-421
    • (2004) The Plant Cell Online , vol.16 , pp. 406-421
    • Brocard-Gifford, I.1    Lynch, T.J.2    Garcia, M.E.3    Malhotra, B.4    Finkelstein, R.R.5
  • 6
    • 31444445016 scopus 로고    scopus 로고
    • Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity
    • Choi, H., Park, H.J., Park, J.H., Kim, S., Im, M.Y., Seo, H.H. and Kim, S.Y. 2005. Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity. Plant Physiology 139:1750-1761
    • (2005) Plant Physiology , vol.139 , pp. 1750-1761
    • Choi, H.1    Park, H.J.2    Park, J.H.3    Kim, S.4    Im, M.Y.5    Seo, H.H.6    Kim, S.Y.7
  • 10
    • 0035115793 scopus 로고    scopus 로고
    • Dark-inducible genes from Arabidopsis thaliana are associated with leaf senescence and repressed by sugars
    • Fujiki, Y., Yoshikawa, Y., Sato, T., Inada, N., Ito, M., Nishida, I. and Watanabe, A. 2008. Dark-inducible genes from Arabidopsis thaliana are associated with leaf senescence and repressed by sugars. Physiologia Plantarum 111:345-352
    • (2008) Physiologia Plantarum , vol.111 , pp. 345-352
    • Fujiki, Y.1    Yoshikawa, Y.2    Sato, T.3    Inada, N.4    Ito, M.5    Nishida, I.6    Watanabe, A.7
  • 12
    • 1342288026 scopus 로고    scopus 로고
    • Affy-analysis of Affymetrix GeneChip data at the probe level
    • Gautier, L., Cope, L., Bolstad, B.M. and Irizarry, R.A. 2004. Affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20:307-315
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 13
    • 78149298270 scopus 로고    scopus 로고
    • Algorithm-driven artifacts in median polish summarization of microarray data
    • Giorgi, F.M., Bolger, A., Lohse, M. and Usadel, B. 2010. Algorithm-driven artifacts in median polish summarization of microarray data. BMC Bioinformatics 11:553.
    • (2010) BMC Bioinformatics , vol.11 , pp. 553
    • Giorgi, F.M.1    Bolger, A.2    Lohse, M.3    Usadel, B.4
  • 14
    • 84875159954 scopus 로고    scopus 로고
    • Comparative study of RNA-seq- and microarray-derived coexpression networks in
    • Bioinformatics, Advance Access doi: 10.1093/bioinformatics/btt1053
    • Giorgi, F.M., Del Fabbro, C. and Licausi, F. 2013. Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana. Bioinformatics, Advance Access, doi: 10.1093/bioinformatics/btt1053.
    • (2013) Arabidopsis Thaliana
    • Giorgi, F.M.1    Del Fabbro, C.2    Licausi, F.3
  • 16
    • 0034736046 scopus 로고    scopus 로고
    • Advances in flavonoid research since 1992
    • Harborne, J.B. and Williams, C.A. 2000. Advances in flavonoid research since 1992. Phytochemistry 55:481-504.
    • (2000) Phytochemistry , vol.55 , pp. 481-504
    • Harborne, J.B.1    Williams, C.A.2
  • 17
    • 79955651864 scopus 로고    scopus 로고
    • Evolution of abscisic acid synthesis and signaling mechanisms
    • Hauser, F., Waadt, R. and Schroeder, J.I. 2011. Evolution of abscisic acid synthesis and signaling mechanisms. Current Biology 21:R346-R355.
    • (2011) Current Biology , vol.21
    • Hauser, F.1    Waadt, R.2    Schroeder, J.I.3
  • 21
    • 84989737701 scopus 로고
    • Hardening, abscisic acid, proline and freezing resistance in two winter wheat varieties
    • Lalk, I. and Dörffling, K. 1985: Hardening, abscisic acid, proline and freezing resistance in two winter wheat varieties. Plant Physiol. 63:287-292
    • (1985) Plant Physiol , vol.63 , pp. 287-292
    • Lalk, I.1    Dörffling, K.2
  • 23
    • 77953215305 scopus 로고    scopus 로고
    • Robin: An intuitive wizard application for R-based expression microarray quality assessment and analysis
    • Lohse, M., Nunes-Nesi, A., Krüger, P., Nagel, A., Hannemann, J., Giorgi, F.M. and Selbig, J. 2010. Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis. Plant Physiol. 153:642-651.
    • (2010) Plant Physiol , vol.153 , pp. 642-651
    • Lohse, M.1    Nunes-Nesi, A.2    Krüger, P.3    Nagel, A.4    Hannemann, J.5    Giorgi, F.M.6    Selbig, J.7
  • 24
    • 0026659895 scopus 로고
    • Characterization of a gene family encoding abscisic acid- and environmental stress-inducible proteins of alfalfa
    • Luo, M., Liu, J.H., Mohapatra, S., Hill, R.D. and Mohapatra, S.S. 1992. Characterization of a gene family encoding abscisic acid- and environmental stress-inducible proteins of alfalfa. J. Biol. Chem. 267:15367-15374
    • (1992) J. Biol. Chem , vol.267 , pp. 15367-15374
    • Luo, M.1    Liu, J.H.2    Mohapatra, S.3    Hill, R.D.4    Mohapatra, S.S.5
  • 25
    • 58949087145 scopus 로고    scopus 로고
    • The experience of the first biostimulant, based on aminoacids and peptides: A short retrospective review on the laboratory researches and the practical results
    • Maini, P. 2006. The experience of the first biostimulant, based on aminoacids and peptides: a short retrospective review on the laboratory researches and the practical results. Fertilitas Agrorum 1:29-43.
    • (2006) Fertilitas Agrorum , vol.1 , pp. 29-43
    • Maini, P.1
  • 26
    • 79958153789 scopus 로고    scopus 로고
    • FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data
    • Manijak, M.P. and Nielsen, H.B. 2011. FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data. BMC Research Notes 4:181
    • (2011) BMC Research Notes , vol.4 , pp. 181
    • Manijak, M.P.1    Nielsen, H.B.2
  • 27
    • 0035115228 scopus 로고    scopus 로고
    • The ABI1 and ABI2 protein phosphatases 2C act in a negative feedback regulatory loop of the abscisic acid signalling pathway
    • Merlot, S., Gosti, F., Guerrier, D., Vavasseur, A. and Giraudat, J. 2001. The ABI1 and ABI2 protein phosphatases 2C act in a negative feedback regulatory loop of the abscisic acid signalling pathway. The Plant Journal 25:295-303
    • (2001) The Plant Journal , vol.25 , pp. 295-303
    • Merlot, S.1    Gosti, F.2    Guerrier, D.3    Vavasseur, A.4    Giraudat, J.5
  • 28
    • 77950296068 scopus 로고    scopus 로고
    • Action of humic acid on promotion of cucumber shoot growth involves nitrate-related changes associated with the root-to-shoot distribution of cytokinins, polyamines and mineral nutrients
    • Mora, V., Bacaicoa, E., Zamarreno, A.M., Aguirre, E., Garnica, M., Fuentes, M. and Garcia-Mina, J.M. 2010. Action of humic acid on promotion of cucumber shoot growth involves nitrate-related changes associated with the root-to-shoot distribution of cytokinins, polyamines and mineral nutrients. Journal of Plant Physiology 167:633-642
    • (2010) Journal of Plant Physiology , vol.167 , pp. 633-642
    • Mora, V.1    Bacaicoa, E.2    Zamarreno, A.M.3    Aguirre, E.4    Garnica, M.5    Fuentes, M.6    Garcia-Mina, J.M.7
  • 31
    • 0942302033 scopus 로고    scopus 로고
    • Drought stress and paper birch (Betula papyrifera) seedlings: Effects of an organic biostimulant on plant health and stress tolerance, and detection of stress effects with instrument-based, noninvasive methods
    • Richardson, A., Aikens, M., Berlyn, G. and Marshall, P. 2004. Drought stress and paper birch (Betula papyrifera) seedlings: effects of an organic biostimulant on plant health and stress tolerance, and detection of stress effects with instrument-based, noninvasive methods. Journal of Arboriculture 30:52-61
    • (2004) Journal of Arboriculture , vol.30 , pp. 52-61
    • Richardson, A.1    Aikens, M.2    Berlyn, G.3    Marshall, P.4
  • 32
    • 79251528250 scopus 로고    scopus 로고
    • AtCAST, a tool for exploring gene expression similarities among DNA microarray experiments using networks
    • Sasaki, E., Takahashi, C., Asami, T. and Shimada, Y. 2011. AtCAST, a tool for exploring gene expression similarities among DNA microarray experiments using networks. Plant and Cell Physiology 52:169-180
    • (2011) Plant and Cell Physiology , vol.52 , pp. 169-180
    • Sasaki, E.1    Takahashi, C.2    Asami, T.3    Shimada, Y.4
  • 33
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 36
    • 33745663533 scopus 로고    scopus 로고
    • Gene expression patterns reveal tissue specific signaling networks controlling programmed cell death and ABA regulated maturation in developing barley seeds
    • Sreenivasulu, N., Radchuk, V., Strickert, M., Miersch, O., Weschke, W. and Wobus, U. 2006. Gene expression patterns reveal tissue specific signaling networks controlling programmed cell death and ABA regulated maturation in developing barley seeds. The Plant Journal 47:310-327.
    • (2006) The Plant Journal , vol.47 , pp. 310-327
    • Sreenivasulu, N.1    Radchuk, V.2    Strickert, M.3    Miersch, O.4    Weschke, W.5    Wobus, U.6
  • 37
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: An R package for assessing the uncertainty in hierarchical clustering
    • Suzuki, R. and Shimodaira, H. 2006. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22:1540-1542.
    • (2006) Bioinformatics , vol.22 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2
  • 38
    • 68449083308 scopus 로고    scopus 로고
    • Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology
    • Tan, K., Ipcho, S., Trengove, R., Oliver, R. and Solomon, P. 2009. Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology. Molecular Plant Pathology 10:703
    • (2009) Molecular Plant Pathology , vol.10 , pp. 703
    • Tan, K.1    Ipcho, S.2    Trengove, R.3    Oliver, R.4    Solomon, P.5
  • 39
    • 0032161654 scopus 로고    scopus 로고
    • Role of cold-responsive genes in plant freezing tolerance
    • Thomashow, M.F. 1998. Role of cold-responsive genes in plant freezing tolerance. Plant Physiol. 118:1-8.
    • (1998) Plant Physiol , vol.118 , pp. 1-8
    • Thomashow, M.F.1
  • 40
    • 17044369876 scopus 로고    scopus 로고
    • Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor
    • Tohge, T., Nishiyama, Y., Hirai, M.Y., Yano, M., Nakajima, J., Awazuhara, M. and Kitayama, M. 2005. Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. The Plant Journal 42:218-235.
    • (2005) The Plant Journal , vol.42 , pp. 218-235
    • Tohge, T.1    Nishiyama, Y.2    Hirai, M.Y.3    Yano, M.4    Nakajima, J.5    Awazuhara, M.6    Kitayama, M.7
  • 41
    • 0028191115 scopus 로고
    • The role of the hexose transporter in the chloroplasts of Arabidopsis thaliana
    • Trethewey, R.N. and Rees, T. 1994. The role of the hexose transporter in the chloroplasts of Arabidopsis thaliana L. Planta 195:168-174.
    • (1994) L. Planta , vol.195 , pp. 168-174
    • Trethewey, R.N.1    Rees, T.2
  • 42
    • 27244453164 scopus 로고    scopus 로고
    • Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses
    • Usadel, B., Nagel, A., Thimm, O., Redestig, H., Blaesing, O.E., Palacios-Rojas, N. and Steinhauser, D. 2005. Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiol. 138:1195-1204.
    • (2005) Plant Physiol , vol.138 , pp. 1195-1204
    • Usadel, B.1    Nagel, A.2    Thimm, O.3    Redestig, H.4    Blaesing, O.E.5    Palacios-Rojas, N.6    Steinhauser, D.7
  • 44
    • 34249111850 scopus 로고    scopus 로고
    • Maize and soybean seed vigour under influence of seed age, seed treatment and temperature in cold stress test
    • Vinkovi?, T., Para?ikovi?, N., Plavsi?, H., Guberac, V. and Levai, L. 2007. Maize and soybean seed vigour under influence of seed age, seed treatment and temperature in cold stress test. Cereal Research Communications 35:1213-1216
    • (2007) Cereal Research Communications , vol.35 , pp. 1213-1216
    • Vinkovi, T.1    Paraikovi, N.2    Plavsi, H.3    Guberac, V.4    Levai, L.5
  • 45
    • 85047684351 scopus 로고    scopus 로고
    • It takes a garden. How work on diverse plant species has contributed to an understanding of flavonoid metabolism
    • Winkel-Shirley, B. 2001. It takes a garden. How work on diverse plant species has contributed to an understanding of flavonoid metabolism. Plant Physiol. 127:1399-1404
    • (2001) Plant Physiol , vol.127 , pp. 1399-1404
    • Winkel-Shirley, B.1
  • 47
    • 0028370581 scopus 로고
    • A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or highsalt stress
    • Yamaguchi-Shinozaki, K. and Shinozaki, K. 1994. A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or highsalt stress. The Plant Cell Online 6:251-264
    • (1994) The Plant Cell Online , vol.6 , pp. 251-264
    • Yamaguchi-Shinozaki, K.1    Shinozaki, K.2
  • 48
    • 13744261322 scopus 로고    scopus 로고
    • Organization of cis-acting regulatory elements in osmotic-and cold-stress-responsive promoters
    • Yamaguchi-Shinozaki, K. and Shinozaki, K. 2005. Organization of cis-acting regulatory elements in osmotic-and cold-stress-responsive promoters. Trends in Plant Science 10:88-94
    • (2005) Trends in Plant Science , vol.10 , pp. 88-94
    • Yamaguchi-Shinozaki, K.1    Shinozaki, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.