-
1
-
-
34548707940
-
AffyProbeMiner: A web resource for computing or retrieving accurately redefined Affymetrix probe sets
-
10.1093/bioinformatics/btm360 17660211
-
Liu H Zeeberg BR Qu G Koru AG Ferrucci A Kahn A Ryan MC Nuhanovic A Munson PJ Reinhold WC Kane DW Weinstein JN AffyProbeMiner: A web resource for computing or retrieving accurately redefined Affymetrix probe sets Bioinformatics 2007, 23(18):2385-2390. 10.1093/bioinformatics/ btm360 17660211
-
(2007)
Bioinformatics
, vol.23
, pp. 2385-2390
-
-
Liu, H.1
Zeeberg, B.R.2
Qu, G.3
Koru, A.G.4
Ferrucci, A.5
Kahn, A.6
Ryan, M.C.7
Nuhanovic, A.8
Munson, P.J.9
Reinhold, W.C.10
Kane, D.W.11
Weinstein, J.N.12
-
2
-
-
24644460573
-
A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips
-
10.1093/bioinformatics/bti583 16020470
-
Liu X Milo M Lawrence ND Rattray M A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips Bioinformatics 2005, 21(18):3637-44. 10.1093/bioinformatics/bti583 16020470
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3637-3644
-
-
Liu, X.1
Milo, M.2
Lawrence, N.D.3
Rattray, M.4
-
3
-
-
27544443176
-
Accounting for probe-level noise in principal component analysis of microarray data
-
10.1093/bioinformatics/bti617 16091409
-
Sanguinetti G Milo M Rattray M Lawrence ND Accounting for probe-level noise in principal component analysis of microarray data Bioinformatics 2005, 21(19):3748-54. 10.1093/bioinformatics/bti617 16091409
-
(2005)
Bioinformatics
, vol.21
, Issue.19
, pp. 3748-3754
-
-
Sanguinetti, G.1
Milo, M.2
Rattray, M.3
Lawrence, N.D.4
-
4
-
-
33748644662
-
Probe-level measurement error improves accuracy in detecting differential gene expression
-
10.1093/bioinformatics/btl361 16820429
-
Liu X Milo M Lawrence ND Rattray M Probe-level measurement error improves accuracy in detecting differential gene expression Bioinformatics 2006, 22(17):2107-13. 10.1093/bioinformatics/btl361 16820429
-
(2006)
Bioinformatics
, vol.22
, Issue.17
, pp. 2107-2113
-
-
Liu, X.1
Milo, M.2
Lawrence, N.D.3
Rattray, M.4
-
5
-
-
34147152900
-
Including probe-level uncertainty in model-based gene expression clustering
-
17376221 1847531 10.1186/1471-2105-8-98
-
Liu X Lin K Andersen B Rattray M Including probe-level uncertainty in model-based gene expression clustering BMC Bioinformatics 2007, 8:98. 17376221 1847531 10.1186/1471-2105-8-98
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 98
-
-
Liu, X.1
Lin, K.2
Andersen, B.3
Rattray, M.4
-
6
-
-
4544341015
-
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
-
Article3. 16646809
-
Smyth G Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments Stat Appl Genet Mol Biol 2004, 3:ARticle3. 16646809
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.1
-
8
-
-
84888289782
-
-
puma User Guide http://www.bioconductor.org/packages/bioc/vignettes/puma/ inst/doc/puma.pdf
-
Puma User Guide
-
-
-
9
-
-
1342288026
-
Affy-analysis of Affymetrix GeneChip data at the probe level
-
10.1093/bioinformatics/btg405 14960456
-
Gautier L Cope L Bolstad BM Irizarry RA affy-analysis of Affymetrix GeneChip data at the probe level Bioinformatics 2004, 20(3):307-315. 10.1093/bioinformatics/btg405 14960456
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
10
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
10.1093/biostatistics/4.2.249 12925520
-
Irizarry RA Hobbs B Collin F Beazer-Barclay YD Antonellis KJ Scherf U Speed TP Exploration, normalization, and summaries of high density oligonucleotide array probe level data Biostatistics 2003, 4(2):249-64. 10.1093/biostatistics/4.2.249 12925520
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
11
-
-
1342330572
-
A benchmark for Affymetrix GeneChip expression measures
-
10.1093/bioinformatics/btg410 14960458
-
Cope LM Irizarry RA Jaffee HA Wu Z Speed TP A benchmark for Affymetrix GeneChip expression measures Bioinformatics 2004, 20(3):323-31. 10.1093/ bioinformatics/btg410 14960458
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 323-331
-
-
Cope, L.M.1
Irizarry, R.A.2
Jaffee, H.A.3
Wu, Z.4
Speed, T.P.5
-
12
-
-
33645326509
-
Comparison of Affymetrix GeneChip expression measures
-
10.1093/bioinformatics/btk046 16410320
-
Irizarry RA Wu Z Jaffee HA Comparison of Affymetrix GeneChip expression measures Bioinformatics 2006, 22(7):789-794. 10.1093/bioinformatics/ btk046 16410320
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 789-794
-
-
Irizarry, R.A.1
Wu, Z.2
Jaffee, H.A.3
-
13
-
-
42449144718
-
A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
-
2324099 18366762 10.1186/1471-2105-9-164
-
Pearson RD A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods BMC Bioinformatics 2008, 9:164. 2324099 18366762 10.1186/1471-2105-9-164
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 164
-
-
Pearson, R.D.1
-
14
-
-
34548561818
-
Beadarray: R classes and methods for Illumina bead-based data
-
10.1093/bioinformatics/btm311 17586828
-
Dunning MJ Smith ML Ritchie ME Tavare S beadarray: R classes and methods for Illumina bead-based data Bioinformatics 2007, 23(16):2183-2184. 10.1093/bioinformatics/btm311 17586828
-
(2007)
Bioinformatics
, vol.23
, Issue.16
, pp. 2183-2184
-
-
Dunning, M.J.1
Smith, M.L.2
Ritchie, M.E.3
Tavare, S.4
-
15
-
-
0001346976
-
An SQP method for general nonlinear programs using only equality constrained subproblems
-
10.1007/BF01580078
-
Spellucci PDB An SQP method for general nonlinear programs using only equality constrained subproblems Mathematical programming 1998, 82(3):413. 10.1007/BF01580078
-
(1998)
Mathematical Programming
, vol.82
, Issue.3
, pp. 413
-
-
Spellucci, P.D.B.1
|