메뉴 건너뛰기




Volumn 8, Issue 1, 2013, Pages

Input-output relations in biological systems: Measurement, information and the Hill equation

Author keywords

Biological design; Cellular biochemistry; Cellular sensors; Information theory; Measurement theory; Natural selection; Signal processing

Indexed keywords

BIOLOGICAL MODEL; GENETIC SELECTION; INFORMATION SCIENCE; KINETICS; REVIEW; SIGNAL TRANSDUCTION; SYSTEMS BIOLOGY;

EID: 84889016222     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-8-31     Document Type: Review
Times cited : (81)

References (51)
  • 1
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
    • 10.1016/S0955-0674(03)00017-6, 12648679
    • Tyson JJ, Chen KC, Novak B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr Opin Cell Biol 2003, 15:221-231. 10.1016/S0955-0674(03)00017-6, 12648679.
    • (2003) Curr Opin Cell Biol , vol.15 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novak, B.3
  • 2
    • 84877783519 scopus 로고    scopus 로고
    • Ultrasensitive response motifs: basic amplifiers in molecular signalling networks
    • doi:10.1098/rsob.130031, 10.1098/rsob.130031, 3718334, 23615029
    • Zhang Q, Bhattacharya S, Andersen ME. Ultrasensitive response motifs: basic amplifiers in molecular signalling networks. Open Biol 2013, 3:130031. doi:10.1098/rsob.130031, 10.1098/rsob.130031, 3718334, 23615029.
    • (2013) Open Biol , vol.3 , pp. 130031
    • Zhang, Q.1    Bhattacharya, S.2    Andersen, M.E.3
  • 3
    • 67650429936 scopus 로고    scopus 로고
    • The common patterns of nature
    • 10.1111/j.1420-9101.2009.01775.x, 2824446, 19538344
    • Frank SA. The common patterns of nature. J Evol Biol 2009, 22:1563-1585. 10.1111/j.1420-9101.2009.01775.x, 2824446, 19538344.
    • (2009) J Evol Biol , vol.22 , pp. 1563-1585
    • Frank, S.A.1
  • 6
    • 34447546202 scopus 로고
    • On the psychophysical law
    • Stevens SS. On the psychophysical law. Psychol Rev 1957, 64:153-181.
    • (1957) Psychol Rev , vol.64 , pp. 153-181
    • Stevens, S.S.1
  • 14
    • 0001424903 scopus 로고
    • An amplified sensitivity arising from covalent modification in biological systems
    • 10.1073/pnas.78.11.6840, 349147, 6947258
    • Goldbeter A, Koshland DE. An amplified sensitivity arising from covalent modification in biological systems. Proc Nat Acad Sci USA 1981, 78:6840-6844. 10.1073/pnas.78.11.6840, 349147, 6947258.
    • (1981) Proc Nat Acad Sci USA , vol.78 , pp. 6840-6844
    • Goldbeter, A.1    Koshland, D.E.2
  • 15
    • 33947304756 scopus 로고    scopus 로고
    • Substrate competition as a source of ultrasensitivity in the inactivation of Wee1
    • 10.1016/j.cell.2007.01.039, 17382882
    • Kim SY, Ferrell JE. Substrate competition as a source of ultrasensitivity in the inactivation of Wee1. Cell 2007, 128:1133-1145. 10.1016/j.cell.2007.01.039, 17382882.
    • (2007) Cell , vol.128 , pp. 1133-1145
    • Kim, S.Y.1    Ferrell, J.E.2
  • 16
    • 71149086936 scopus 로고    scopus 로고
    • Signaling motifs and Weber's law
    • 10.1016/j.molcel.2009.11.032, 20005833
    • Ferrell JE. Signaling motifs and Weber's law. Mol Cell 2009, 36:724-727. 10.1016/j.molcel.2009.11.032, 20005833.
    • (2009) Mol Cell , vol.36 , pp. 724-727
    • Ferrell, J.E.1
  • 17
    • 71149092283 scopus 로고    scopus 로고
    • Dynamics and variability of ERK2 response to EGF in individual living cells
    • 10.1016/j.molcel.2009.11.025, 20005850
    • Cohen-Saidon C, Cohen AA, Sigal A, Liron Y, Alon U. Dynamics and variability of ERK2 response to EGF in individual living cells. Mol Cell 2009, 36:885-893. 10.1016/j.molcel.2009.11.025, 20005850.
    • (2009) Mol Cell , vol.36 , pp. 885-893
    • Cohen-Saidon, C.1    Cohen, A.A.2    Sigal, A.3    Liron, Y.4    Alon, U.5
  • 18
    • 71149092489 scopus 로고    scopus 로고
    • Evidence that fold-change, and not absolute level, of β-catenin dictates Wnt signaling
    • 10.1016/j.molcel.2009.11.017, 2921914, 20005849
    • Goentoro L, Kirschner MW. Evidence that fold-change, and not absolute level, of β-catenin dictates Wnt signaling. Mol Cell 2009, 36:872-884. 10.1016/j.molcel.2009.11.017, 2921914, 20005849.
    • (2009) Mol Cell , vol.36 , pp. 872-884
    • Goentoro, L.1    Kirschner, M.W.2
  • 19
    • 71149099313 scopus 로고    scopus 로고
    • The incoherent feedforward loop can provide fold-change detection in gene regulation
    • 10.1016/j.molcel.2009.11.018, 2896310, 20005851
    • Goentoro L, Shoval O, Kirschner MW, Alon U. The incoherent feedforward loop can provide fold-change detection in gene regulation. Mol Cell 2009, 36:894-899. 10.1016/j.molcel.2009.11.018, 2896310, 20005851.
    • (2009) Mol Cell , vol.36 , pp. 894-899
    • Goentoro, L.1    Shoval, O.2    Kirschner, M.W.3    Alon, U.4
  • 21
    • 0018001339 scopus 로고
    • Simultaneous analysis of families of sigmoidal curves: application to bioassay, radioligand assay, and physiological dose-response curves
    • DeLean A, Munson P, Rodbard D. Simultaneous analysis of families of sigmoidal curves: application to bioassay, radioligand assay, and physiological dose-response curves. Am J Physiol-Endocrinol Metab 1978, 235:97-102.
    • (1978) Am J Physiol-Endocrinol Metab , vol.235 , pp. 97-102
    • DeLean, A.1    Munson, P.2    Rodbard, D.3
  • 22
    • 0030768931 scopus 로고    scopus 로고
    • The Hill equation revisited: uses and misuses
    • Weiss JN. The Hill equation revisited: uses and misuses. FASEB J 1997, 11:835-841.
    • (1997) FASEB J , vol.11 , pp. 835-841
    • Weiss, J.N.1
  • 23
    • 30444461377 scopus 로고    scopus 로고
    • The receptor concept: pharmacology's big idea
    • Rang HP. The receptor concept: pharmacology's big idea. Br J Pharmacol 2006, 147:9-16.
    • (2006) Br J Pharmacol , vol.147 , pp. 9-16
    • Rang, H.P.1
  • 25
    • 77955012690 scopus 로고    scopus 로고
    • Analysing force-pCa curves
    • 10.1007/s10974-010-9208-7, 2943343, 20490629
    • Walker JS, Li X, Buttrick PM. Analysing force-pCa curves. J Muscle Res Cell Motil 2010, 31:59-69. 10.1007/s10974-010-9208-7, 2943343, 20490629.
    • (2010) J Muscle Res Cell Motil , vol.31 , pp. 59-69
    • Walker, J.S.1    Li, X.2    Buttrick, P.M.3
  • 26
    • 0028675227 scopus 로고
    • The relationship between receptor-effector unit heterogeneity and the shape of the concentration-effect profile: pharmacodynamic implications
    • Hoffman A, Goldberg A. The relationship between receptor-effector unit heterogeneity and the shape of the concentration-effect profile: pharmacodynamic implications. J Pharmacokinet Biopharm 1994, 22:449-468.
    • (1994) J Pharmacokinet Biopharm , vol.22 , pp. 449-468
    • Hoffman, A.1    Goldberg, A.2
  • 27
    • 0035118126 scopus 로고    scopus 로고
    • Receptor dissociation constants and the information entropy of membrane coding ligand concentration
    • 10.1093/chemse/26.2.95, 11238241
    • Getz WM, Lansky P. Receptor dissociation constants and the information entropy of membrane coding ligand concentration. Chem Senses 2001, 26:95-104. 10.1093/chemse/26.2.95, 11238241.
    • (2001) Chem Senses , vol.26 , pp. 95-104
    • Getz, W.M.1    Lansky, P.2
  • 28
    • 14844318077 scopus 로고    scopus 로고
    • When kinases meet mathematics: the systems biology of MAPK, signalling
    • 10.1016/j.febslet.2005.02.002, 15763569
    • Kolch W, Calder M, Gilbert D. When kinases meet mathematics: the systems biology of MAPK, signalling. FEBS Lett 2005, 579:1891-1895. 10.1016/j.febslet.2005.02.002, 15763569.
    • (2005) FEBS Lett , vol.579 , pp. 1891-1895
    • Kolch, W.1    Calder, M.2    Gilbert, D.3
  • 29
    • 79953652546 scopus 로고    scopus 로고
    • Information transmission in genetic regulatory networks: a review
    • 10.1088/0953-8984/23/15/153102, 21460423
    • Tkačik G, Walczak AM. Information transmission in genetic regulatory networks: a review. J Phys: Condens Matter 2011, 23:153102. 10.1088/0953-8984/23/15/153102, 21460423.
    • (2011) J Phys: Condens Matter , vol.23 , pp. 153102
    • Tkačik, G.1    Walczak, A.M.2
  • 30
    • 84876418336 scopus 로고    scopus 로고
    • Statistical mechanics of Monod-Wyman-Changeux (MWC) models
    • 10.1016/j.jmb.2013.03.013, 3786005, 23499654
    • Marzen S, Garcia HG, Phillips R. Statistical mechanics of Monod-Wyman-Changeux (MWC) models. J Mol Biol 2013, 425:1433-1460. 10.1016/j.jmb.2013.03.013, 3786005, 23499654.
    • (2013) J Mol Biol , vol.425 , pp. 1433-1460
    • Marzen, S.1    Garcia, H.G.2    Phillips, R.3
  • 31
    • 0029134903 scopus 로고
    • Michaelis-Menten mechanism reconsidered: implications of fractal kinetics
    • 10.1006/jtbi.1995.0181, 7475096
    • Savageau MA. Michaelis-Menten mechanism reconsidered: implications of fractal kinetics. J Theor Biol 1995, 176:115-124. 10.1006/jtbi.1995.0181, 7475096.
    • (1995) J Theor Biol , vol.176 , pp. 115-124
    • Savageau, M.A.1
  • 32
    • 0031853923 scopus 로고    scopus 로고
    • Development of fractal kinetic theory for enzyme-catalysed reactions and implications for the design of biochemical pathways
    • 10.1016/S0303-2647(98)00020-3, 9715749
    • Savageau MA. Development of fractal kinetic theory for enzyme-catalysed reactions and implications for the design of biochemical pathways. Biosystems 1998, 47:9-36. 10.1016/S0303-2647(98)00020-3, 9715749.
    • (1998) Biosystems , vol.47 , pp. 9-36
    • Savageau, M.A.1
  • 33
    • 33748520215 scopus 로고    scopus 로고
    • Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
    • 10.1088/1478-3967/1/3/001, 16204833
    • Andrews SS, Bray D. Stochastic simulation of chemical reactions with spatial resolution and single molecule detail. Phys Biol 2004, 1:137-151. 10.1088/1478-3967/1/3/001, 16204833.
    • (2004) Phys Biol , vol.1 , pp. 137-151
    • Andrews, S.S.1    Bray, D.2
  • 35
    • 2442543316 scopus 로고    scopus 로고
    • Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws
    • 10.1016/j.pbiomolbio.2004.01.012, 15142746
    • Schnell S, Turner TE. Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws. Prog Biophys Mol Biol 2004, 85:235-260. 10.1016/j.pbiomolbio.2004.01.012, 15142746.
    • (2004) Prog Biophys Mol Biol , vol.85 , pp. 235-260
    • Schnell, S.1    Turner, T.E.2
  • 37
    • 0035927612 scopus 로고    scopus 로고
    • Pair approximation for lattice models with multiple interaction scales
    • 10.1006/jtbi.2001.2322, 11403564
    • Ellner SP. Pair approximation for lattice models with multiple interaction scales. J Theor Biol 2001, 210:435-447. 10.1006/jtbi.2001.2322, 11403564.
    • (2001) J Theor Biol , vol.210 , pp. 435-447
    • Ellner, S.P.1
  • 39
    • 0031559933 scopus 로고    scopus 로고
    • Quantification of information transfer via cellular signal transduction pathways
    • 10.1016/S0014-5793(97)01018-1, 9315734
    • Kholodenko BN, Hoek JB, Westerhoff HV, Brown GC. Quantification of information transfer via cellular signal transduction pathways. FEBS Lett 1997, 414:430-434. 10.1016/S0014-5793(97)01018-1, 9315734.
    • (1997) FEBS Lett , vol.414 , pp. 430-434
    • Kholodenko, B.N.1    Hoek, J.B.2    Westerhoff, H.V.3    Brown, G.C.4
  • 41
    • 77953528430 scopus 로고    scopus 로고
    • Measurement invariance, entropy, and probability
    • Frank SA, Smith E. Measurement invariance, entropy, and probability. Entropy 2010, 12:289-303.
    • (2010) Entropy , vol.12 , pp. 289-303
    • Frank, S.A.1    Smith, E.2
  • 42
    • 79951769747 scopus 로고    scopus 로고
    • A simple derivation and classification of common probability distributions based on information symmetry and measurement scale
    • 10.1111/j.1420-9101.2010.02204.x, 21265914
    • Frank SA, Smith E. A simple derivation and classification of common probability distributions based on information symmetry and measurement scale. J Evol Biol 2011, 24:469-484. 10.1111/j.1420-9101.2010.02204.x, 21265914.
    • (2011) J Evol Biol , vol.24 , pp. 469-484
    • Frank, S.A.1    Smith, E.2
  • 43
    • 66549126798 scopus 로고    scopus 로고
    • On scaling laws of biosensors: a stochastic approach
    • Das S, Vikalo H, Hassibi A. On scaling laws of biosensors: a stochastic approach. J Appl Phys 2009, 105:102021.
    • (2009) J Appl Phys , vol.105 , pp. 102021
    • Das, S.1    Vikalo, H.2    Hassibi, A.3
  • 45
    • 17644446947 scopus 로고    scopus 로고
    • How robust are switches in intracellular signaling cascades?
    • 10.1016/S0022-5193(03)00247-9, 14604583
    • Blühgen N, Herzel H. How robust are switches in intracellular signaling cascades?. J Theor Biol 2003, 225:293-300. 10.1016/S0022-5193(03)00247-9, 14604583.
    • (2003) J Theor Biol , vol.225 , pp. 293-300
    • Blühgen, N.1    Herzel, H.2
  • 46
    • 0005773686 scopus 로고    scopus 로고
    • Empirical distributions of stock returns: European securities markets, 1990-95
    • Aparicio FM, Estrada J. Empirical distributions of stock returns: European securities markets, 1990-95. Eur J Finance 2001, 7(1):1-21.
    • (2001) Eur J Finance , vol.7 , Issue.1 , pp. 1-21
    • Aparicio, F.M.1    Estrada, J.2
  • 47
    • 0035471837 scopus 로고    scopus 로고
    • Exponential and power-law probability distributions of wealth and income in the United Kingdom and the United States
    • Dragulescu AA, Yakovenko VM. Exponential and power-law probability distributions of wealth and income in the United Kingdom and the United States. Phys A 2001, 299:213-221.
    • (2001) Phys A , vol.299 , pp. 213-221
    • Dragulescu, A.A.1    Yakovenko, V.M.2
  • 49
    • 34247953814 scopus 로고
    • More is different
    • 10.1126/science.177.4047.393, 17796623
    • Anderson P. More is different. Science 1972, 177:393-396. 10.1126/science.177.4047.393, 17796623.
    • (1972) Science , vol.177 , pp. 393-396
    • Anderson, P.1
  • 50
    • 79751518738 scopus 로고
    • Princeton, NJ: Princeton University Press
    • Weyl H. Symmetry 1983, Princeton, NJ: Princeton University Press.
    • (1983) Symmetry
    • Weyl, H.1
  • 51
    • 79951774413 scopus 로고    scopus 로고
    • Measurement scale in maximum entropy models of species abundance
    • 10.1111/j.1420-9101.2010.02209.x, 3078054, 21265915
    • Frank SA. Measurement scale in maximum entropy models of species abundance. J Evol Biol 2011, 24:485-496. 10.1111/j.1420-9101.2010.02209.x, 3078054, 21265915.
    • (2011) J Evol Biol , vol.24 , pp. 485-496
    • Frank, S.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.