-
1
-
-
0347504844
-
FinO is an RNA chaperone that facilitates sense-antisense RNA interactions
-
Arthur, D. C., Ghetu, A. F., Gubbins, M. J., Edwards, R. A., Frost, L. S. & Glover, J. N. (2003). FinO is an RNA chaperone that facilitates sense-antisense RNA interactions. EMBO J 22, 6346-6355.
-
(2003)
EMBO J
, vol.22
, pp. 6346-6355
-
-
Arthur, D.C.1
Ghetu, A.F.2
Gubbins, M.J.3
Edwards, R.A.4
Frost, L.S.5
Glover, J.N.6
-
2
-
-
1842506160
-
Regulation at complex bacterial promoters: How bacteria use different promoter organizations to produce different regulatory outcomes
-
Barnard, A., Wolfe, A. & Busby, S. (2004). Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes. Curr Opin Microbiol 7, 102-108.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 102-108
-
-
Barnard, A.1
Wolfe, A.2
Busby, S.3
-
3
-
-
0029018797
-
Role for the histone-like protein H-NS in growth phasedependent and osmotic regulation of sS and many sS-dependent genes in Escherichia coli
-
Barth, M., Marschall, C., Muffler, A., Fischer, D. & Hengge-Aronis, R. (1995). Role for the histone-like protein H-NS in growth phasedependent and osmotic regulation of sS and many sS-dependent genes in Escherichia coli. J Bacteriol 177, 3455-3464.
-
(1995)
J Bacteriol
, vol.177
, pp. 3455-3464
-
-
Barth, M.1
Marschall, C.2
Muffler, A.3
Fischer, D.4
Hengge-Aronis, R.5
-
4
-
-
39849097831
-
RNA polymerase: The vehicle of transcription
-
Borukhov, S. & Nudler, E. (2008). RNA polymerase: the vehicle of transcription. Trends Microbiol 16, 126-134.
-
(2008)
Trends Microbiol
, vol.16
, pp. 126-134
-
-
Borukhov, S.1
Nudler, E.2
-
5
-
-
1842591130
-
The regulation of bacterial transcription initiation
-
Browning, D. F. & Busby, S. J. (2004). The regulation of bacterial transcription initiation. Nat Rev Microbiol 2, 57-65.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 57-65
-
-
Browning, D.F.1
Busby, S.J.2
-
6
-
-
0036016823
-
Conjugal transfer of the virulence plasmid of Salmonella enterica is regulated by the leucineresponsive regulatory protein and DNA adenine methylation
-
Camacho, E. M. & Casadesús, J. (2002). Conjugal transfer of the virulence plasmid of Salmonella enterica is regulated by the leucineresponsive regulatory protein and DNA adenine methylation. Mol Microbiol 44, 1589-1598.
-
(2002)
Mol Microbiol
, vol.44
, pp. 1589-1598
-
-
Camacho, E.M.1
Casadesús, J.2
-
7
-
-
0022999318
-
The F plasmid carries an IS3 insertion within finO
-
Cheah, K. C. & Skurray, R. (1986). The F plasmid carries an IS3 insertion within finO. J Gen Microbiol 132, 3269-3275.
-
(1986)
J Gen Microbiol
, vol.132
, pp. 3269-3275
-
-
Cheah, K.C.1
Skurray, R.2
-
8
-
-
71549146932
-
Conjugative DNA metabolism in Gram-negative bacteria
-
de la Cruz, F., Frost, L. S., Meyer, R. J. & Zechner, E. L. (2010). Conjugative DNA metabolism in Gram-negative bacteria. FEMS Microbiol Rev 34, 18-40.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 18-40
-
-
de la Cruz, F.1
Frost, L.S.2
Meyer, R.J.3
Zechner, E.L.4
-
9
-
-
0038354921
-
Region 4 of s as a target for transcription regulation
-
Dove, S. L., Darst, S. A. & Hochschild, A. (2003). Region 4 of s as a target for transcription regulation. Mol Microbiol 48, 863-874.
-
(2003)
Mol Microbiol
, vol.48
, pp. 863-874
-
-
Dove, S.L.1
Darst, S.A.2
Hochschild, A.3
-
10
-
-
83255167029
-
Structural basis for promoter 210 element recognition by the bacterial RNA polymerase s subunit
-
Feklistov, A. & Darst, S. A. (2011). Structural basis for promoter 210 element recognition by the bacterial RNA polymerase s subunit. Cell 147, 1257-1269.
-
(2011)
Cell
, vol.147
, pp. 1257-1269
-
-
Feklistov, A.1
Darst, S.A.2
-
11
-
-
77954737999
-
Regulation of bacterial conjugation: Balancing opportunity with adversity
-
Frost, L. S. & Koraimann, G. (2010). Regulation of bacterial conjugation: balancing opportunity with adversity. Future Microbiol 5, 1057-1071.
-
(2010)
Future Microbiol
, vol.5
, pp. 1057-1071
-
-
Frost, L.S.1
Koraimann, G.2
-
12
-
-
0031665134
-
F2 phenocopies: Characterization of expression of the F transfer region in stationary phase
-
Frost, L. S. & Manchak, J. (1998). F2 phenocopies: characterization of expression of the F transfer region in stationary phase. Microbiology 144, 2579-2587.
-
(1998)
Microbiology
, vol.144
, pp. 2579-2587
-
-
Frost, L.S.1
Manchak, J.2
-
13
-
-
40449131944
-
Conjugal transfer of the Salmonella enterica virulence plasmid in the mouse intestine
-
García-Quintanilla, M., Ramos-Morales, F. & Casadesús, J. (2008). Conjugal transfer of the Salmonella enterica virulence plasmid in the mouse intestine. J Bacteriol 190, 1922-1927.
-
(2008)
J Bacteriol
, vol.190
, pp. 1922-1927
-
-
García-Quintanilla, M.1
Ramos-Morales, F.2
Casadesús, J.3
-
14
-
-
4944225301
-
Genomic studies with Escherichia coli MelR protein: Applications of chromatin immunoprecipitation and microarrays
-
Grainger, D. C., Overton, T. W., Reppas, N., Wade, J. T., Tamai, E., Hobman, J. L., Constantinidou, C., Struhl, K., Church, G. & Busby, S. J. W. (2004). Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays. J Bacteriol 186, 6938-6943.
-
(2004)
J Bacteriol
, vol.186
, pp. 6938-6943
-
-
Grainger, D.C.1
Overton, T.W.2
Reppas, N.3
Wade, J.T.4
Tamai, E.5
Hobman, J.L.6
Constantinidou, C.7
Struhl, K.8
Church, G.9
Busby, S.J.W.10
-
15
-
-
16244418664
-
Molecular gymnastics: Distortion of an RNA polymerase s factor
-
Hinton, D. M. (2005). Molecular gymnastics: distortion of an RNA polymerase s factor. Trends Microbiol 13, 140-143.
-
(2005)
Trends Microbiol
, vol.13
, pp. 140-143
-
-
Hinton, D.M.1
-
16
-
-
25144508877
-
Bacterial conjugation: Cell-to-cell contact dependent horizontal gene spread
-
Edited by R. V. Miller & M. J. Day. Washington, DC: American Society for Microbiology
-
Koraimann, G. (2004). Bacterial conjugation: cell-to-cell contact dependent horizontal gene spread. In Microbial Evolution Gene Establishment, Survival and Exchange, pp. 111-124. Edited by R. V. Miller & M. J. Day. Washington, DC: American Society for Microbiology.
-
(2004)
Microbial Evolution Gene Establishment, Survival and Exchange
, pp. 111-124
-
-
Koraimann, G.1
-
17
-
-
0024978041
-
A stable core region of the tra operon mRNA of plasmid R1-19
-
Koraimann, G. & Högenauer, G. (1989). A stable core region of the tra operon mRNA of plasmid R1-19. Nucleic Acids Res 17, 1283-1298.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 1283-1298
-
-
Koraimann, G.1
Högenauer, G.2
-
18
-
-
0029745991
-
The FinOP repressor system of plasmid R1: Analysis of the antisense RNA control of traJ expression and conjugative DNA transfer
-
Koraimann, G., Teferle, K., Markolin, G., Woger, W. & Högenauer, G. (1996). The FinOP repressor system of plasmid R1: analysis of the antisense RNA control of traJ expression and conjugative DNA transfer. Mol Microbiol 21, 811-821.
-
(1996)
Mol Microbiol
, vol.21
, pp. 811-821
-
-
Koraimann, G.1
Teferle, K.2
Markolin, G.3
Woger, W.4
Högenauer, G.5
-
19
-
-
7644232342
-
Conjugation in Gramnegative bacteria
-
Edited by G. Phillips & B. Funnell. Washington, DC: American Society for Microbiology
-
Lawley, T., Wilkins, B. M. & Frost, L. (2004). Conjugation in Gramnegative bacteria. In Plasmid Biology, pp. 203-226. Edited by G. Phillips & B. Funnell. Washington, DC: American Society for Microbiology.
-
(2004)
Plasmid Biology
, pp. 203-226
-
-
Lawley, T.1
Wilkins, B.M.2
Frost, L.3
-
20
-
-
0026680833
-
Dissection of IncP conjugative plasmid transfer: Definition of the transfer region Tra2 by mobilization of the Tra1 region in trans
-
Lessl, M., Balzer, D., Lurz, R., Waters, V. L., Guiney, D. G. & Lanka, E. (1992). Dissection of IncP conjugative plasmid transfer: definition of the transfer region Tra2 by mobilization of the Tra1 region in trans. J Bacteriol 174, 2493-2500.
-
(1992)
J Bacteriol
, vol.174
, pp. 2493-2500
-
-
Lessl, M.1
Balzer, D.2
Lurz, R.3
Waters, V.L.4
Guiney, D.G.5
Lanka, E.6
-
21
-
-
1842529555
-
Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling
-
Liu, X. & De Wulf, P. (2004). Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling. J Biol Chem 279, 12588-12597.
-
(2004)
J Biol Chem
, vol.279
, pp. 12588-12597
-
-
Liu, X.1
De Wulf, P.2
-
22
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 22DDCT method
-
Livak, K. J. & Schmittgen, T. D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 22DDCT method. Methods 25, 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
23
-
-
0003785155
-
-
Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
-
Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
24
-
-
0027168243
-
Characterization of the Escherichia coli F factor traY gene product and its binding sites
-
Nelson, W. C., Morton, B. S., Lahue, E. E. & Matson, S. W. (1993). Characterization of the Escherichia coli F factor traY gene product and its binding sites. J Bacteriol 175, 2221-2228.
-
(1993)
J Bacteriol
, vol.175
, pp. 2221-2228
-
-
Nelson, W.C.1
Morton, B.S.2
Lahue, E.E.3
Matson, S.W.4
-
25
-
-
29144461520
-
Plasmid R1-replication and its control
-
Nordström, K. (2006). Plasmid R1-replication and its control. Plasmid 55, 1-26.
-
(2006)
Plasmid
, vol.55
, pp. 1-26
-
-
Nordström, K.1
-
26
-
-
34547602473
-
MyHits: Improvements to an interactive resource for analyzing protein sequences
-
Pagni, M., Ioannidis, V., Cerutti, L., Zahn-Zabal, M., Jongeneel, C. V., Hau, J., Martin, O., Kuznetsov, D. & Falquet, L. (2007). MyHits: improvements to an interactive resource for analyzing protein sequences. Nucleic Acids Res 35 (Web Server issue), W433-W437.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pagni, M.1
Ioannidis, V.2
Cerutti, L.3
Zahn-Zabal, M.4
Jongeneel, C.V.5
Hau, J.6
Martin, O.7
Kuznetsov, D.8
Falquet, L.9
-
27
-
-
0036306493
-
The bacteriophage T4 transcription activator MotA interacts with the far-C-terminal region of the s70 subunit of Escherichia coli RNA polymerase
-
Pande, S., Makela, A., Dove, S. L., Nickels, B. E., Hochschild, A. & Hinton, D. M. (2002). The bacteriophage T4 transcription activator MotA interacts with the far-C-terminal region of the s70 subunit of Escherichia coli RNA polymerase. J Bacteriol 184, 3957-3964.
-
(2002)
J Bacteriol
, vol.184
, pp. 3957-3964
-
-
Pande, S.1
Makela, A.2
Dove, S.L.3
Nickels, B.E.4
Hochschild, A.5
Hinton, D.M.6
-
28
-
-
33646539782
-
Synergistic effects in mixed Escherichia coli biofilms: Conjugative plasmid transfer drives biofilm expansion
-
Reisner, A., Höller, B. M., Molin, S. & Zechner, E. L. (2006). Synergistic effects in mixed Escherichia coli biofilms: conjugative plasmid transfer drives biofilm expansion. J Bacteriol 188, 3582-3588.
-
(2006)
J Bacteriol
, vol.188
, pp. 3582-3588
-
-
Reisner, A.1
Höller, B.M.2
Molin, S.3
Zechner, E.L.4
-
29
-
-
77956048953
-
The F plasmid transfer activator TraJ is a dimeric helix-turn-helix DNAbinding protein
-
Rodriguez-Maillard, J. M., Arutyunov, D. & Frost, L. S. (2010). The F plasmid transfer activator TraJ is a dimeric helix-turn-helix DNAbinding protein. FEMS Microbiol Lett 310, 112-119.
-
(2010)
FEMS Microbiol Lett
, vol.310
, pp. 112-119
-
-
Rodriguez-Maillard, J.M.1
Arutyunov, D.2
Frost, L.S.3
-
30
-
-
17644381300
-
Global gene expression profiling in Escherichia coli K12: Effects of oxygen availability and ArcA
-
Salmon, K. A., Hung, S. P., Steffen, N. R., Krupp, R., Baldi, P., Hatfield, G. W. & Gunsalus, R. P. (2005). Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. J Biol Chem 280, 15084-15096.
-
(2005)
J Biol Chem
, vol.280
, pp. 15084-15096
-
-
Salmon, K.A.1
Hung, S.P.2
Steffen, N.R.3
Krupp, R.4
Baldi, P.5
Hatfield, G.W.6
Gunsalus, R.P.7
-
31
-
-
0003903343
-
-
2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
32
-
-
77954746762
-
Regulation of bacterial conjugation in microaerobiosis by hostencoded functions ArcAB and SdhABCD
-
Serna, A., Espinosa, E., Camacho, E. M. & Casadesús, J. (2010). Regulation of bacterial conjugation in microaerobiosis by hostencoded functions ArcAB and SdhABCD. Genetics 184, 947-958.
-
(2010)
Genetics
, vol.184
, pp. 947-958
-
-
Serna, A.1
Espinosa, E.2
Camacho, E.M.3
Casadesús, J.4
-
33
-
-
0026101634
-
Regulation of the F plasmid traY promoter in Escherichia coli by host and plasmid factors
-
Silverman, P. M., Wickersham, E. & Harris, R. (1991). Regulation of the F plasmid traY promoter in Escherichia coli by host and plasmid factors. J Mol Biol 218, 119-128.
-
(1991)
J Mol Biol
, vol.218
, pp. 119-128
-
-
Silverman, P.M.1
Wickersham, E.2
Harris, R.3
-
34
-
-
0037369966
-
The cyclic AMP-cyclic AMP receptor protein complex regulates activity of the traJ promoter of the Escherichia coli conjugative plasmid pRK100
-
Starcic, M., Zgur-Bertok, D., Jordi, B. J., Wösten, M. M., Gaastra, W. & van Putten, J. P. (2003). The cyclic AMP-cyclic AMP receptor protein complex regulates activity of the traJ promoter of the Escherichia coli conjugative plasmid pRK100. J Bacteriol 185, 1616-1623.
-
(2003)
J Bacteriol
, vol.185
, pp. 1616-1623
-
-
Starcic, M.1
Zgur-Bertok, D.2
Jordi, B.J.3
Wösten, M.M.4
Gaastra, W.5
van Putten, J.P.6
-
35
-
-
0032571319
-
Signal transduction and bacterial conjugation: Characterization of the role of ArcA in regulating conjugative transfer of the resistance plasmid R1
-
Strohmaier, H., Noiges, R., Kotschan, S., Sawers, G., Högenauer, G., Zechner, E. L. & Koraimann, G. (1998). Signal transduction and bacterial conjugation: characterization of the role of ArcA in regulating conjugative transfer of the resistance plasmid R1. J Mol Biol 277, 309-316.
-
(1998)
J Mol Biol
, vol.277
, pp. 309-316
-
-
Strohmaier, H.1
Noiges, R.2
Kotschan, S.3
Sawers, G.4
Högenauer, G.5
Zechner, E.L.6
Koraimann, G.7
-
36
-
-
0031864956
-
Regulatory mechanisms in expression of the traY-I operon of sex factor plasmid R100: Involvement of traJ and traY gene products
-
Taki, K., Abo, T. & Ohtsubo, E. (1998). Regulatory mechanisms in expression of the traY-I operon of sex factor plasmid R100: involvement of traJ and traY gene products. Genes Cells 3, 331-345.
-
(1998)
Genes Cells
, vol.3
, pp. 331-345
-
-
Taki, K.1
Abo, T.2
Ohtsubo, E.3
-
37
-
-
70349327503
-
Mechanisms and evolution of control logic in prokaryotic transcriptional regulation
-
van Hijum, S. A., Medema, M. H. & Kuipers, O. P. (2009). Mechanisms and evolution of control logic in prokaryotic transcriptional regulation. Microbiol Mol Biol Rev 73, 481-509.
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, pp. 481-509
-
-
van Hijum, S.A.1
Medema, M.H.2
Kuipers, O.P.3
-
38
-
-
62649163835
-
Growth phase-and cell division-dependent activation and inactivation of the s32 regulon in Escherichia coli
-
Wagner, M. A., Zahrl, D., Rieser, G. & Koraimann, G. (2009). Growth phase-and cell division-dependent activation and inactivation of the s32 regulon in Escherichia coli. J Bacteriol 191, 1695-1702.
-
(2009)
J Bacteriol
, vol.191
, pp. 1695-1702
-
-
Wagner, M.A.1
Zahrl, D.2
Rieser, G.3
Koraimann, G.4
-
39
-
-
30744437713
-
Characterization of the opposing roles of H-NS and TraJ in transcriptional regulation of the F-plasmid tra operon
-
Will, W. R. & Frost, L. S. (2006). Characterization of the opposing roles of H-NS and TraJ in transcriptional regulation of the F-plasmid tra operon. J Bacteriol 188, 507-514.
-
(2006)
J Bacteriol
, vol.188
, pp. 507-514
-
-
Will, W.R.1
Frost, L.S.2
-
40
-
-
7644241959
-
The role of H-NS in silencing F transfer gene expression during entry into stationary phase
-
Will, W. R., Lu, J. & Frost, L. S. (2004). The role of H-NS in silencing F transfer gene expression during entry into stationary phase. Mol Microbiol 54, 769-782.
-
(2004)
Mol Microbiol
, vol.54
, pp. 769-782
-
-
Will, W.R.1
Lu, J.2
Frost, L.S.3
-
41
-
-
84864798613
-
Relaxosome function and conjugation regulation in F-like plasmids-a structural biology perspective
-
Wong, J. J. W., Lu, J. & Glover, J. N. M. (2012). Relaxosome function and conjugation regulation in F-like plasmids-a structural biology perspective. Mol Microbiol 85, 602-617.
-
(2012)
Mol Microbiol
, vol.85
, pp. 602-617
-
-
Wong, J.J.W.1
Lu, J.2
Glover, J.N.M.3
-
42
-
-
33748804181
-
Expression and assembly of a functional type IV secretion system elicit extracytoplasmic and cytoplasmic stress responses in Escherichia coli
-
Zahrl, D., Wagner, M., Bischof, K. & Koraimann, G. (2006). Expression and assembly of a functional type IV secretion system elicit extracytoplasmic and cytoplasmic stress responses in Escherichia coli. J Bacteriol 188, 6611-6621.
-
(2006)
J Bacteriol
, vol.188
, pp. 6611-6621
-
-
Zahrl, D.1
Wagner, M.2
Bischof, K.3
Koraimann, G.4
-
43
-
-
34547752985
-
GroEL plays a central role in stress-induced negative regulation of bacterial conjugation by promoting proteolytic degradation of the activator protein TraJ
-
Zahrl, D., Wagner, A., Tscherner, M. & Koraimann, G. (2007). GroEL plays a central role in stress-induced negative regulation of bacterial conjugation by promoting proteolytic degradation of the activator protein TraJ. J Bacteriol 189, 5885-5894.
-
(2007)
J Bacteriol
, vol.189
, pp. 5885-5894
-
-
Zahrl, D.1
Wagner, A.2
Tscherner, M.3
Koraimann, G.4
|