TamiR1123 originated from a family of miniature inverted-repeat transposable elements (MITE) including one inserted in the Vrn-A1a promoter in wheat

Plant Science

Volumn 215-216, Issue , 2014, Pages 117-123

  Yu, Ming ^a   Carver, Brett F ^a   Yan, Liuling ^a  

^a OKLAHOMA STATE UNIVERSITY   (United States)

Author keywords

Flowering time; MicroRNA; MITE; Vernalization; VRN1; Wheat

Indexed keywords

ACARI; TRITICUM AESTIVUM;

ARABIDOPSIS PROTEIN; MICRORNA; PLANT RNA; REPRESSOR PROTEIN; VRN1 PROTEIN, ARABIDOPSIS;

ALLELE; ARTICLE; FLOWERING TIME; GENE EXPRESSION REGULATION; GENETICS; INVERTED REPEAT; METABOLISM; MITE; PHOTOPERIODICITY; PLANT DEVELOPMENT; PLANT GENE; PROMOTER REGION; SEASON; TEMPERATURE; TRANSPOSON; VERNALIZATION; VRN1; WHEAT;

FLOWERING TIME; MICRORNA; MITE; VERNALIZATION; VRN1; WHEAT;

ALLELES; ARABIDOPSIS PROTEINS; DNA TRANSPOSABLE ELEMENTS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; INVERTED REPEAT SEQUENCES; MICRORNAS; PHOTOPERIOD; PLANT DEVELOPMENT; PROMOTER REGIONS, GENETIC; REPRESSOR PROTEINS; RNA, PLANT; SEASONS; TEMPERATURE; TRITICUM;

EID: 84888804429     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2013.11.007     Document Type: Article

References (34)

1. Gill B.S., Appels R., Botha-Oberholster A.M., Buell C.R., Bennetzen J.L., Chalhoub B., Chumley F., Dvořák J., Iwanaga M., Keller B., Li W., McCombie W.R., Ogihara Y., Quetier F., Sasaki T. A workshop report on wheat genome sequencing: international genome research on wheat consortium. Genetics 2004, 168:1087-1096.
2. Pugsley A.T. Genetic analysis of spring-winter habit of growth in wheat. Aust. J. Agric. Res. 1971, 22:21-31.
3. Chouard P. Vernalization and its relations to dormancy. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1960, 11:191-238.
4. Amasino R. Vernalization, competence, and the epigenetic memory of winter. Plant Cell 2004, 16:2553-2559.
5. Bennett M.D., Leitch I.J. Nuclear-DNA amounts in angiosperms. Ann. Bot. 1995, 76:113-176.
6. m. Funct. Integr. Genomics 2002, 2:70-80.
7. Wicker T., Yahiaoui N., Guyot R., Schlagenhauf E., Liu Z.D., Dubcovsky J., Keller B. Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat. Plant Cell 2003, 15:1186-1197.
8. m2 in diploid wheat. J. Hered. 2000, 91:304-306.
9. Yan L., Loukoianov A., Tranquilli G., Helguera M., Fahima T., Dubcovsky J. Positional cloning of the wheat vernalization gene VRN1. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:6263-6268.
10. Mandel M.A., Gustafson-Brown C., Savidge B., Yanofsky M.F. Molecular characterization of the Arabidopsis floral homeotic gene APETALA1. Nature 1992, 360:273-277.
11. Yan L., Loukoianov A., Blechl A., Tranquilli G., Ramakrishna W., SanMiguel P., Bennetzen J.L., Echenique V., Dubcovsky J. The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science 2004, 303:1640-1644.
12. Dubcovsky J., Loukoianov A., Fu D., Valarik M., Sanchez A., Yan L. Effect of photoperiod on the regulation of wheat vernalization genes VRN1 and VRN2. Plant Mol. Biol. 2006, 60:469-480.
13. Pidal B., Yan L., Fu D., Zhang F., Tranquilli G., Dubcoveky J. The CArG-box located upstream from the transcriptional start of wheat vernalization gene VRN1 is not necessary for the vernalization response. J. Hered. 2009, 100:355-364.
14. Fu D., Szucs P., Yan L., Helguera M., Skinner J.S., von Zitzewitz J., Hayes P.M., Dubcovsky J. Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat. Mol. Genet. Genomics 2005, 273:54-65.
15. Golovnina K.A., Kondratenko E.Y., Blinov A.G., Goncharov N.P. Molecular characterization of vernalization loci VRN1 in wild and cultivated wheats. BMC Plant Biol. 2010, 10:168-182.
16. Yan L., Helguera M., Kato K., Fukuyama S., Sherman J., Dubcovsky J. Allelic variation at the VRN1 promoter region in polyploid wheat. Theor. Appl. Genet. 2004, 109:1677-1686.
17. Chu C., Tan C., Yu G., Zhong S., Xu S.S., Yan L. A novel retrotransposon inserted in the dominant Vrn-B1 allele confers spring growth habit in tetraploid wheat (Triticum turgidum L.). G3 2011, 1:637-645.
18. Danyluk J., Kane N.A., Breton G., Limin A.E., Fowler D.B., Sarhan F. TaVRT-1, a putative transcription factor associated with vegetative to reproductive transition in cereals. Plant Physiol. 2003, 132:1849-1860.
19. Murai K., Miyamae M., Kato H., Takumi S., Ogihara Y. WAP1, a wheat APETALA1 homolog, plays a central role in the phase transition from vegetative to reproductive growth. Plant Cell Physiol. 2003, 44:1255-1265.
20. Trevaskis B., Bagnall D.J., Ellis M.H., Peacock W.J., Dennis E.S. MADS box genes control vernalization-induced flowering in cereals. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:13099-13104.
21. Kane N.A., Danyluk J., Tardif G., Ouellet F., Laliberte J.F., Limin A.E., Fowler D.B., Sarhan F. TaVRT-2, a member of the StMADS-11 clade of flowering repressors, is regulated by vernalization and photoperiod in wheat. Plant Physiol. 2005, 138:2354-2363.
22. Li C., Dubcovsky J. Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J. 2008, 55:543-554.
23. Loukoianov A., Yan L., Blechl A., Sanchez A., Dubcovsky J. Regulation of VRN1 vernalization genes in normal and transgenic polyploid wheat. Plant Physiol. 2005, 138:2364-2373.
24. Sunkar R., Zhou X., Zheng Y., Zhang W., Zhu J.K. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol. 2008, 8:25-41.
25. Ferguson A.A., Jiang N. Pack-MULEs: recycling and reshaping genes through GC-biased acquisition. Mob. Genet. Elements 2011, 1:135-138.
26. Yao Y., Guo G., Ni Z., Sunkar R., Du J., Du J., K-Zhu J., Sun Q. Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol. 2007, 8:R96.
27. Chen X. Small RNAs - secrets and surprises of the genome. Plant J. 2010, 61:941-958.
28. Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
29. Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
30. Brennecke J., Stark A., Russell R.B., Cohen S.M. Principles of MicroRNA-target recognition. PLoS Biol. 2005, 3:e85.
31. Ferguson A.A., Jiang N. Mutator-like elements with multiple long terminal inverted repeats in plants. Comp. Funct. Genomics 2012, 2012:695827.
32. Lisch D. Mutator transposons. Trends Plant Sci. 2002, 7:498-504.
33. Das L., Martienssen R. Site-selected transposon mutagenesis at the hcf106 locus in maize. Plant Cell 1995, 7:287-294.
34. Roberts D.W.A. Identification of loci on chromosome-5A of wheat involved in control of cold hardiness, vernalization, leaf length, rosette growth habit, and height of hardened plants. Genome 1990, 33:247-259.