-
1
-
-
0029852357
-
Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge
-
Aboul-Ela F, Karn J, Varani G. 1996. Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge. Nucleic Acids Res 24: 3974-3981.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3974-3981
-
-
Aboul-Ela, F.1
Karn, J.2
Varani, G.3
-
2
-
-
0030660482
-
Structure and dynamics of the iron responsive element RNA: Implications for binding of the RNA by iron regulatory binding proteins
-
Addess KJ, Basilion JP, Klausner RD, Rouault TA, Pardi A. 1997. Structure and dynamics of the iron responsive element RNA: Implications for binding of the RNA by iron regulatory binding proteins. J Mol Biol 274: 72-83.
-
(1997)
J Mol Biol
, vol.274
, pp. 72-83
-
-
Addess, K.J.1
Basilion, J.P.2
Klausner, R.D.3
Rouault, T.A.4
Pardi, A.5
-
3
-
-
0026593806
-
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
-
Antao VP, Tinoco I Jr. 1992. Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops. Nucleic Acids Res 20: 819-824.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 819-824
-
-
Antao, V.P.1
Tinoco Jr., I.2
-
4
-
-
0025942059
-
A thermodynamic study of unusually stable RNA and DNA hairpins
-
Antao VP, Lai SY, Tinoco I Jr. 1991. A thermodynamic study of unusually stable RNA and DNA hairpins. Nucleic Acids Res 19: 5901-5905.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 5901-5905
-
-
Antao, V.P.1
Lai, S.Y.2
Tinoco Jr., I.3
-
5
-
-
67650542563
-
Contribution of the closing base pair to exceptional stability in RNA tetraloops: Roles for molecular mimicry and electrostatic factors
-
Blose JM, Proctor DJ, Veeraraghavan N, Misra VK, Bevilacqua PC. 2009. Contribution of the closing base pair to exceptional stability in RNA tetraloops: Roles for molecular mimicry and electrostatic factors. J Am Chem Soc 131: 8474-8484.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 8474-8484
-
-
Blose, J.M.1
Proctor, D.J.2
Veeraraghavan, N.3
Misra, V.K.4
Bevilacqua, P.C.5
-
7
-
-
56049118219
-
Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis
-
Dethoff EA, Hansen AL, Musselman C, Watt ED, Andricioaei I, Al-Hashimi HM. 2008. Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis. Biophys J 95: 3906-3915.
-
(2008)
Biophys J
, vol.95
, pp. 3906-3915
-
-
Dethoff, E.A.1
Hansen, A.L.2
Musselman, C.3
Watt, E.D.4
Andricioaei, I.5
Al-Hashimi, H.M.6
-
8
-
-
84870289330
-
Visualizing transient low-populated structures of RNA
-
Dethoff EA, Petzold K, Chugh J, Casiano-Negroni A, Al-Hashimi HM. 2012. Visualizing transient low-populated structures of RNA. Nature 491: 724-728.
-
(2012)
Nature
, vol.491
, pp. 724-728
-
-
Dethoff, E.A.1
Petzold, K.2
Chugh, J.3
Casiano-Negroni, A.4
Al-Hashimi, H.M.5
-
9
-
-
0036849272
-
The apical stem-loop of the hepatitis B virus encapsidation signal folds into a stable tri-loop with two underlying pyrimidine bulges
-
Flodell S, Schleucher J, Cromsigt JAMTC, Ippel H, Kidd-Ljunggren K, Wijmenga SS. 2002. The apical stem-loop of the hepatitis B virus encapsidation signal folds into a stable tri-loop with two underlying pyrimidine bulges. Nucleic Acids Res 30: 4803-4811.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4803-4811
-
-
Flodell, S.1
Schleucher, J.2
Cromsigt, J.A.M.T.C.3
Ippel, H.4
Kidd-Ljunggren, K.5
Wijmenga, S.S.6
-
10
-
-
33749986531
-
Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal
-
Flodell S, Petersen M, Girard FC, Zdunek J, Kidd-Ljunggren K, Schleucher J, Wijmenga SS. 2006. Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal. Nucleic Acids Res 34: 4449-4457.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4449-4457
-
-
Flodell, S.1
Petersen, M.2
Girard, F.C.3
Zdunek, J.4
Kidd-Ljunggren, K.5
Schleucher, J.6
Wijmenga, S.S.7
-
11
-
-
0034033255
-
A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro
-
Haasnoot PCJ, Brederode FT, Olsthoorn RCL, Bol JF. 2000. A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro. RNA 6: 708-716.
-
(2000)
RNA
, vol.6
, pp. 708-716
-
-
Haasnoot, P.C.J.1
Brederode, F.T.2
Olsthoorn, R.C.L.3
Bol, J.F.4
-
12
-
-
0036203278
-
The Brome mosaic virus subgenomic promoter hairpin is structurally similar to the iron-responsive element and functionally equivalent to the minus-strand core promoter stem-loop C
-
Haasnoot PCJ, Olsthoorn RCL, Bol JF. 2002. The Brome mosaic virus subgenomic promoter hairpin is structurally similar to the iron-responsive element and functionally equivalent to the minus-strand core promoter stem-loop C. RNA 8: 110-122.
-
(2002)
RNA
, vol.8
, pp. 110-122
-
-
Haasnoot, P.C.J.1
Olsthoorn, R.C.L.2
Bol, J.F.3
-
13
-
-
0242363180
-
A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions
-
Haasnoot PCJ, Bol JF, Olsthoorn RCL. 2003. A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions. Proc Natl Acad Sci 100: 12596-12600.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 12596-12600
-
-
Haasnoot, P.C.J.1
Bol, J.F.2
Olsthoorn, R.C.L.3
-
14
-
-
0345731284
-
Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations
-
Hall KB, Williams DJ. 2004. Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations. RNA 10: 34-47.
-
(2004)
RNA
, vol.10
, pp. 34-47
-
-
Hall, K.B.1
Williams, D.J.2
-
15
-
-
48749149745
-
Solvent suppression in Fourier transform nuclear magnetic resonance
-
Hore PJ. 1983. Solvent suppression in Fourier transform nuclear magnetic resonance. J Magn Reson 55: 283-300.
-
(1983)
J Magn Reson
, vol.55
, pp. 283-300
-
-
Hore, P.J.1
-
16
-
-
0027444622
-
An NMR study of the HIV-1 TAR element hairpin
-
Jaeger JA, Tinoco I Jr. 1993. An NMR study of the HIV-1 TAR element hairpin. Biochemistry 32: 12522-12530.
-
(1993)
Biochemistry
, vol.32
, pp. 12522-12530
-
-
Jaeger, J.A.1
Tinoco Jr., I.2
-
17
-
-
0033744387
-
A potential RNA drug target in the hepatitis C virus internal ribosomal entry site
-
Klinck R, Westhof E, Walker S, Afshar M, Collier A, Aboul-ela F. 2000. A potential RNA drug target in the hepatitis C virus internal ribosomal entry site. RNA 6: 1423-1431.
-
(2000)
RNA
, vol.6
, pp. 1423-1431
-
-
Klinck, R.1
Westhof, E.2
Walker, S.3
Afshar, M.4
Collier, A.5
Aboul-ela, F.6
-
18
-
-
0141643186
-
The apical loop of the HIV-1 TAR RNA hairpin is stabilized by a cross-loop base pair
-
Kulinski T, Olejniczak M, Huthoff H, Bielecki L, Pachulska-Wieczorerk K, Das AT, Berkhout B, Adamiak RW. 2003. The apical loop of the HIV-1 TAR RNA hairpin is stabilized by a cross-loop base pair. J Biol Chem 278: 38892-38901.
-
(2003)
J Biol Chem
, vol.278
, pp. 38892-38901
-
-
Kulinski, T.1
Olejniczak, M.2
Huthoff, H.3
Bielecki, L.4
Pachulska-Wieczorerk, K.5
Das, A.T.6
Berkhout, B.7
Adamiak, R.W.8
-
19
-
-
0037258776
-
The lonepair triloop: A new motif in RNA structure
-
Lee JC, Cannone JC, Gutell RR. 2003. The lonepair triloop: A new motif in RNA structure. J Mol Biol 325: 65-83.
-
(2003)
J Mol Biol
, vol.325
, pp. 65-83
-
-
Lee, J.C.1
Cannone, J.C.2
Gutell, R.R.3
-
20
-
-
0029861968
-
A model of the iron responsive element RNA hairpin loop structure determined from NMR and thermodynamic data
-
Liang LG, Hall KB. 1996. A model of the iron responsive element RNA hairpin loop structure determined from NMR and thermodynamic data. Biochemistry 35: 13586-13596.
-
(1996)
Biochemistry
, vol.35
, pp. 13586-13596
-
-
Liang, L.G.1
Hall, K.B.2
-
21
-
-
0033673387
-
Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function
-
Lukavsky PJ, Otto GA, Lancaster AM, Sarnow P, Puglisi JD. 2000. Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nat Struct Biol 7: 1105-1110.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 1105-1110
-
-
Lukavsky, P.J.1
Otto, G.A.2
Lancaster, A.M.3
Sarnow, P.4
Puglisi, J.D.5
-
23
-
-
33845555707
-
Exchangeable proton NMR without baseline distorsion, using new strong-pulse sequences
-
Plateau P, Gueron M. 1982. Exchangeable proton NMR without baseline distorsion, using new strong-pulse sequences. J Am Chem Soc 104: 7310-7311.
-
(1982)
J Am Chem Soc
, vol.104
, pp. 7310-7311
-
-
Plateau, P.1
Gueron, M.2
-
25
-
-
0011275745
-
WATERGATE: Applications in homonuclear and heteronuclear nD NMR experiments
-
Saudek V, Piotto M, Sklenar V. 1994. WATERGATE: Applications in homonuclear and heteronuclear nD NMR experiments. Bruker Report 140: 6-9.
-
(1994)
Bruker Report
, vol.140
, pp. 6-9
-
-
Saudek, V.1
Piotto, M.2
Sklenar, V.3
-
26
-
-
0027247971
-
RNA hairpin loop stability depends on closing base pair
-
Serra MJ, Lyttle MH, Axelson TJ, Schadt CA, Turner DH. 1993. RNA hairpin loop stability depends on closing base pair. Nucleic Acids Res 21: 3845-3849.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3845-3849
-
-
Serra, M.J.1
Lyttle, M.H.2
Axelson, T.J.3
Schadt, C.A.4
Turner, D.H.5
-
27
-
-
0033576289
-
Isolation and characterization of thermodynamically stable and unstable RNA hairpins from a triloop combinatorial library
-
Shu ZY, Bevilacqua PC. 1999. Isolation and characterization of thermodynamically stable and unstable RNA hairpins from a triloop combinatorial library. Biochemistry 38: 15369-15379.
-
(1999)
Biochemistry
, vol.38
, pp. 15369-15379
-
-
Shu, Z.Y.1
Bevilacqua, P.C.2
-
28
-
-
0028861734
-
The importance of a single G in the hairpin loop of the iron responsive element (IRE) in ferritin mRNA for structure: An NMR spectroscopy study
-
Sierzputowska H, McKenzie RA, Theil EC. 1995. The importance of a single G in the hairpin loop of the iron responsive element (IRE) in ferritin mRNA for structure: An NMR spectroscopy study. Nucleic Acids Res 23: 146-153.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 146-153
-
-
Sierzputowska, H.1
McKenzie, R.A.2
Theil, E.C.3
-
29
-
-
84859953908
-
The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter
-
Skov J, Gaudin M, Podbevsek P, Olsthoorn RCL, Petersen M. 2012. The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter. RNA 18: 992-1000.
-
(2012)
RNA
, vol.18
, pp. 992-1000
-
-
Skov, J.1
Gaudin, M.2
Podbevsek, P.3
Olsthoorn, R.C.L.4
Petersen, M.5
-
30
-
-
77958103511
-
Thermodynamic characterization of RNA triloops
-
Thulasi P, Pandya LK, Znosko BM. 2010. Thermodynamic characterization of RNA triloops. Biochemistry 49: 9058-9062.
-
(2010)
Biochemistry
, vol.49
, pp. 9058-9062
-
-
Thulasi, P.1
Pandya, L.K.2
Znosko, B.M.3
-
31
-
-
39149085024
-
Cartilage-hair hypoplasia-associated mutations in the RNase MRP P3 domain affect RNA folding and ribonucleoprotein assembly
-
Welting TJM, Matijssen S, Peters FMA, van Doorn NL, Dekkers L, van Venrooij WJ, Heus HA, Bonafe L, Pruijn GJM. 2008. Cartilage-hair hypoplasia-associated mutations in the RNase MRP P3 domain affect RNA folding and ribonucleoprotein assembly. Biochim Biophys Acta 1783: 455-466.
-
(2008)
Biochim Biophys Acta
, vol.1783
, pp. 455-466
-
-
Welting, T.J.M.1
Matijssen, S.2
Peters, F.M.A.3
Van Doorn, N.L.4
Dekkers, L.5
Van Venrooij, W.J.6
Heus, H.A.7
Bonafe, L.8
Pruijn, G.J.M.9
|