Atomic force microscopy and voltammetric characterisation of synthetic homo-oligodeoxynucleotides

Electrochimica Acta

Volumn 110, Issue , 2013, Pages 599-607

  Chiorcea Paquim, Ana Maria ^a   Santos, Paulina Viegas ^a   Oliveira Brett, Ana Maria ^a  

^a UNIVERSITY OF COIMBRA   (Portugal)

Author keywords

Adsorption; G quadruplex; G quartet; Homo oligodeoxynucleotides; I motif

Indexed keywords

FOLDING PROPERTIES; G-QUADRUPLEXES; G-QUARTET; HOMO-OLIGODEOXYNUCLEOTIDES; I-MOTIF; NANOTECHNOLOGY APPLICATIONS; OLIGODEOXYNUCLEOTIDES; SPHERICAL AGGREGATES;

ADSORPTION; AGGREGATES; ATOMIC FORCE MICROSCOPY; DNA SEQUENCES; NANOTECHNOLOGY; NANOWIRES; NUCLEIC ACIDS; OXIDATION; PH; SCAFFOLDS; VOLTAMMETRY;

AGGLOMERATION;

EID: 84888331503     PISSN: 00134686     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.electacta.2013.03.103     Document Type: Article

References (34)

1. J. Riu, A. Maroto, and F.X. Rius Nanosensors in environmental analysis Talanta 69 2006 288
2. R.F. Service Biology offers nanotechs a helping hand Science 298 2002 2322
3. I. Willner Biomaterials for sensors, fuel cells, and circuitry, Science 298 2002 2407
4. A.M. Oliveira Brett, S.H.P. Serrano, and J.A.P. Piedade Electrochemistry of DNA, comprehensive chemical kinetics R.G. Compton, G. Hancock, Applications of Kinetic Modelling vol. 37 1999 Elsevier Oxford, UK 91 (Chapter 3)
5. A.M. Oliveira, and Brett DNA-based biosensors L. Gorton, Comprehensive Analytical Chemistry. Biosensors and Modern Specific Analytical Techniques vol. 44 2005 179
6. E. Palecek, and F. Jelen Electrochemistry of nucleic acids and development of DNA sensors Critical Reviews in Analytical Chemistry 32 2002 261
7. M. Mascini, I. Palchetti, and G. Marrazza DNA electrochemical biosensors Fresenius Journal of Analytical Chemistry 369 2001 15
8. J. Wang From DNA biosensors to gene chips Nucleic Acids Research 28 2000 3011
9. W. Saenger Principles of nucleic acid structure Ch.R. Cantor, Springer Advanced Texts in Chemistry 1984 Springer-Verlag New York
10. H. Yan, X. Zhang, Z. Shen, and N.C. Seeman A robust DNA mechanical device controlled by hybridization topology Nature 415 2002 62
11. N. Borovok, N. Iram, D. Zikich, J. Ghabboun, G.I. Livshits, D. Porath, and A.B. Kotlyar Assembling of G-strands into novel tetra-molecular parallel G4-DNA nanostructures using avidin-biotin recognition Nucleic Acids Research 36 2008 5050
12. T.C. Marsh, J. Vesenka, and E. Henderson A new DNA nanostructure, the G-wire, imaged by scanning probe microscopy Nucleic Acids Research 23 1995 696
13. H.G. Hansma, I. Revenko, K. Kim, and D.E. Laney Atomic force microscopy of long and short double-stranded, single-stranded and triple-stranded nucleic acids Nucleic Acids Research 24 1996 713
14. L.T. Costa, M. Kerkmann, G. Hartmann, S. Endres, P.M. Bisch, W.M. Heckl, and S. Thalhammer Structural studies of oligonucleotides containing G-quadruplex motifs using AFM Biochemical and Biophysical Research Communications 313 2004 1065
15. E.A. Oussatcheva, L.S. Shlyakhtenko, R. Glass, R.R. Sinden, Y.L. Lyubchenko, and V.N. Potaman Structure of branched DNA molecules: gel retardation and atomic force microscopy studies Journal of Molecular Biology 292 1999 75
16. W.J. Tiner, V.N. Potaman, R.R. Sinden, and Y.L. Lyubchenko The structure of intramolecular triplex DNA: atomic force microscopy study Journal of Molecular Biology 314 2001 353
17. A.M. Oliveira Brett, and A.-M. Chiorcea Effect of pH and applied potential on the adsorption of DNA on highly oriented pyrolytic graphite electrodes. Atomic force microscopy surface characterisation Electrochemistry Communications 5 2003 178
18. A.M. Oliveira Brett, and A.-M. Chiorcea Atomic force microscopy of DNA immobilized onto a highly oriented pyrolytic graphite electrode surface Langmuir 19 2003 3830
19. A.M. Oliveira Brett, and A.-M. Chiorcea DNA imaged on a HOPG electrode surface by AFM with controlled potential Bioelectrochemistry 1/2 2005 117
20. A.M. Oliveira Brett, and A.-M. Chiorcea Atomic force microscopy characterization of an electrochemical DNA-biosensor Bioelectrochemistry 63 2003 229
21. A.-M. Chiorcea-Paquim, T.S. Oretskaya, and A.M. Oliveira Brett Adsorption of synthetic homo- and hetero-oligodeoxynucleotides onto highly oriented pyrolytic graphite: atomic force microscopy characterization Biophysical Chemistry 121 2006 131
22. A.-M. Chiorcea-Paquim, T.S. Oretskaya, and A.M. Oliveira Brett Atomic force microscopy characterization of synthetic pyrimidinic oligodeoxynucleotides adsorbed onto an HOPG electrode under applied potential Electrochimica Acta 51 2006 5037
23. A.M. Oliveira-Brett, J.A.P. Piedade, L.A. Silva, and V.C. Diculescu Voltammetric determination of all DNA nucleotides Analytical Biochemistry 332 2004 321
24. S. Neidle, and S. Balasubramanian Quadruplex Nucleic Acids 2006 The Royal Society of Chemistry Cambridge, UK
25. S. Neidle, S. in:, and Neidle Therapeutic Applications of Quadruplex Nucleic Acids 2012 Academic Press Boston 21 (Chapter 2)
26. A.T. Phan, and J.L. Mergny Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix Nucleic Acids Research 30 2002 4618
27. T. Simonsson G-Quadruplex DNA structures - Variation of a theme Biological Chemistry 382 2001 621
28. P.L. Tran, A.D. Cian, J. Gros, R. Moriyama, and J.L. Mergny Tetramolecular quadruplex stability and assembly Topics in Current Chemistry 1 2012 10.1007/128-2012-334
29. C. Bardin, and J.L. Leroy The formation pathway of tetramolecular G-quadruplexes Nucleic Acids Research 36 2008 477
30. C. Kang, X. Zhang, R. Ratliff, R. Moyzis, and A. Rich Crystal structure of four-stranded Oxytricha telomeric DNA Nature 356 1992 126
31. G. Laughlan, A.I. Murchie, D.G. Norman, M.H. Moore, P.C. Moody, D.M. Lilley, and B. Luisi The high resolution crystal structure of a parallel-stranded guanine tetraplex Science 265 1994 520
32. M. Guéron, and J.L. Leroy The i-motif in nucleic acids Current Opinion Structural Biology 10 2000 326
33. J. Choi, S. Kim, T. Tachikawa, M. Fujitsuka, and T. Majima pH-induced intramolecular folding dynamics of i-Motif DNA Journal of the American Chemical Society 133 2011 16146
34. N. Camerman, J.K. Fawcett, and A. Camerman Molecular structure of a deoxyribose-dinucleotide, sodium thymidylyl-5′, 3′-thymidylate- 5′ hydrate (pTpT), and a possible structural model for polythymidylate Journal of Molecular Biology 107 1976 601