DNA imaged on a HOPG electrode surface by AFM with controlled potential

Bioelectrochemistry

Volumn 66, Issue 1-2 SPEC. ISS., 2005, Pages 117-124

  Oliveira Brett, Ana Maria ^a   Chiorcea Paquim, Ana Maria ^a  

^a UNIVERSITY OF COIMBRA   (Portugal)

Author keywords

Adsorption; AFM; Atomic force microscope; DNA; HOPG

Indexed keywords

AGGLOMERATION; ATOMIC FORCE MICROSCOPY; CHARACTERIZATION; ELECTRODES; ENZYME IMMOBILIZATION; HYDROPHOBICITY; IMAGING TECHNIQUES; SELF ASSEMBLY;

ELECTRODE POTENTIAL; ELECTROSTATIC INTERACTION; HYDROPHOBIC SURFACE; INTERMOLECULAR INTERACTIONS; SINGLE MOLECULES;

DNA;

DNA;

ATOMIC FORCE MICROSCOPY; CHEMICAL STRUCTURE; CONFERENCE PAPER; DNA STRAND; DNA STRUCTURE; ELECTROCHEMISTRY; HYDROPHOBICITY; ION SELECTIVE ELECTRODE; MOLECULAR INTERACTION; NUCLEIC ACID IMMOBILIZATION; PROTEIN AGGREGATION; PROTEIN ASSEMBLY; PROTEIN DNA INTERACTION; PROTEIN STABILITY; STRUCTURE ANALYSIS;

EID: 17144381304     PISSN: 15675394     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioelechem.2004.05.009     Document Type: Conference Paper

References (24)

1. W. Saenger Ch.R. Cantor Principles of Nucleic Acid Structure 1984 Springer-Verlag New York
2. N.C. Seeman Novel DNA constructions Annu. Rev. Biophys. Biomol. Struct. 27 1998 225 248
3. C. Mao, T.H. LaBean, J.H. Reif, and N.C. Seeman Logical computation using algorithmic self-assembly of DNA triple-crossover molecules Nature 407 2002 493 496
4. M.I. Pividori, A. Merkoçi, and S. Alegret Electrochemical genosensor design: immobilization of oligonucleotides onto transducer surfaces and detection methods Biosens. Bioelectron. 15 2000 291 303
5. H.G. Hansma, J. Vesenka, C. Siegerist, G. Kelderman, H. Morrett, R.L. Sinsheimer, V. Elings, C. Bustamante, and P.K. Hansma Reproducible imaging and dissection of plasmid DNA under liquid with the atomic force microscope Science 256 1992 1180 1184
6. H.G. Hansma, I. Revenko, K. Kim, and D.E. Laney Atomic force microscopy of long and short double-stranded, single-stranded and triple-stranded nucleic acids Nucleic Acids Res. 24 1996 713 720
7. A. Sanchez-Sevilla, J. Thimonier, M. Marilley, J. Rocca-Serra, and J. Barbet Accuracy of AFM measurements of the contour length of DNA fragments adsorbed onto mica in air and in aqueous buffer Ultramicroscopy 92 2002 151 158
8. R. Schneider, R. Lurz, G. Luder, C. Tolksdorf, A. Travers, and G. Muskhelishvili An architectural role of the Escherichia coli chromatin protein FIS in organising DNA Nucleic Acids Res. 29 2001 5107 5114
9. O. Medalia, J. Englander, R. Guckenberger, and J. Sperling AFM imaging in solution of protein-DNA complexes formed on DNA anchored to a gold surface Ultramicroscopy 90 2001 103 112
10. A. Hamelin The crystallographic orientation of gold surfaces at the gold aqueous-solution interphases J. Electroanal. Chem. 142 1982 299 316
11. B.E. Conway Electrochemical oxide film formation at noble metals as a surface-chemical process Prog. Surf. Sci. 49 1995 351 452
12. A.M. Oliveira-Brett, and F.-M. Matysik Voltammetric and sonovoltammetric studies on the oxidation of thymine and cytosine at a glassy carbon electrode J. Electroanal. Chem. 429 1997 95 99
13. A.M. Oliveira-Brett, S.H.P. Serrano, and J.A.P. Piedade Electrochemistry of DNA R.G. Compton G. Hancock Comprehensive Chemical Kinetics Applications of Kinetic Modeling vol. 37 1999 Elsevier Oxford, UK 91 119 Chap. 3
14. A.M. Oliveira-Brett, M. Vivan, I.R. Fernandes, and J.A.P. Piedade Electrochemical detection of in situ adriamycin oxidative damage to DNA Talanta 56 2002 959 970
15. C.R. Clemmer, and Th.P. Beebe Jr. Graphite: a mimic for DNA and other biomolecules in scanning tunneling microscope studies Science 251 1991 640 642
16. W.M. Heckl, and G. Binning Domain walls on graphite mimic DNA Ultramicroscopy 42-44 1992 1073 1078
17. G.Y. Liu, H. Chang, and A.J. Bard Large scale hexagonal domain structures superimposed on the atomic corrugation of a graphite surface observed by scanning tunneling microscopy Langmuir 7 1991 1139 1142
18. A.M. Oliveira-Brett, and A.-M. Chiorcea Effect of pH and applied potential on the adsorption of DNA on highly oriented pyrolytic graphite electrodes. Atomic force microscopy surface characterization Electrochem. Commun. 5 2003 178 183
19. A.M. Oliveira Brett, and A.-M. Chiorcea Atomic force microscopy of DNA immobilized onto a highly oriented pyrolytic graphite electrode surface Langmuir 19 2003 3830 3890
20. S. Tanaka, Y. Maeda, L.-T. Cai, H. Tabata, and T. Kawai Formation of two-dimensional network structure of DNA molecules on highly oriented pyrolytic graphite surface Jpn. J. Appl. Phys. 40 2001 4217 4220
21. M. Argaman, R. Golan, N.H. Thomson, and H.G. Hansma Phase imaging of moving DNA molecules and DNA molecules replicated in the atomic force microscope Nucleic Acids Res. 25 1997 4379 4384
22. C. Gaillard, and F. Strauss Eliminating DNA loss and denaturation during storage in plastic microtubes Am. Clin. Lab. 20 2001 52 54
23. J.-F. Allemand, D. Bensimon, L. Jullien, A. Bensimon, and V. Croquette pH-dependent specific binding and combing of DNA Biophys. J. 73 1997 2064 2070
24. C.M.A. Brett, and A.M. Oliveira Brett Electrochemistry. Principles, Methods, and Applications 1993 Oxford University Press Oxford