Molecular mechanics of mussel adhesion proteins

Journal of the Mechanics and Physics of Solids

Volumn 62, Issue 1, 2014, Pages 19-30

  Qin, Zhao ^a   Buehler, Markus J ^a  

^a Massachusetts Institute of Technology   (United States)

Author keywords

Adhesion; Disorder; Experiment; Interfacial mechanics; Mechanics; Molecular; Multiscale modeling; Protein; Structure

Indexed keywords

ADHESION TO SUBSTRATE; DIHYDROXYPHENYLALANINE; DISORDER; INTERFACIAL MECHANICS; MECHANICS OF ADHESION; MOLECULAR; MULTI-SCALE MODELING; STRUCTURAL AND MECHANICAL PROPERTIES;

ADHESION; CONTINUUM MECHANICS; EXPERIMENTS; MECHANICAL PROPERTIES; MECHANICS; MOLECULAR STRUCTURE; PROTEINS; STRUCTURE (COMPOSITION); SUBSTRATES; SURFACE MORPHOLOGY;

MOLLUSCS;

EID: 84888290946     PISSN: 00225096     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmps.2013.08.015     Document Type: Article

References (44)

1. B. Alberts, J.H. Wilson, and T. Hunt Molecular Biology of the Cell 2008 Garland Science New York
2. N. Almora-Barrios, and N.H. de Leeuw A density functional theory study of the interaction of collagen peptides with hydroxyapatite surfaces Langmuir 26 18 2010 14535 14542
3. A. Barducci, G. Bussi, and M. Parrinello Well-tempered metadynamics: a smoothly converging and tunable free-energy method Phys. Rev. Lett. 100 2 2008 020603
4. B.L. Bayne Marine Mussels, Their Ecology and Physiology 1976 Cambridge University Press Cambridge, Eng.; New York
5. M.R. Begley, R.R. Collino, J.N. Israelachvili, and R.M. McMeeking Peeling of a tape with large deformations and frictional sliding J. Mech. Phys. Solids 61 5 2013 1265 1279
6. E.C. Bell, and J.M. Gosline Mechanical design of mussel byssus: material yield enhances attachment strength J. Exp. Biol. 199 4 1996 1005 1017
7. H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, and P.E. Bourne The Protein Data Bank Nucleic Acids Res. 28 1 2000 235 242
8. M. Bonomi, D. Branduardi, G. Bussi, C. Camilloni, D. Provasi, P. Raiteri, D. Donadio, F. Marinelli, F. Pietrucci, R.A. Broglia, and M. Parrinello PLUMED: a portable plugin for free-energy calculations with molecular dynamics Comput. Phys. Commun. 180 10 2009 1961 1972
9. B.R. Brooks, R.E. Bruccoleri, B.D. Olafson, D.J. States, S. Swaminathan, and M. Karplus CHARMM - a program for macromolecular energy, minimization, and dynamics calculations J. Comput. Chem. 4 2 1983 187 217
10. C.E. Brubaker, H. Kissler, L.J. Wang, D.B. Kaufman, and P.B. Messersmith Biological performance of mussel-inspired adhesive in extrahepatic islet transplantation Biomaterials 31 3 2010 420 427
11. S.W. Cranford, A. Tarakanova, N.M. Pugno, and M.J. Buehler Nonlinear material behaviour of spider silk yields robust webs Nature 482 7383 2012 72 76
12. M. Feig, J. Karanicolas, and C.L. Brooks 3rd MMTSB tool set: enhanced sampling and multiscale modeling methods for applications in structural biology J. Mol. Graphics Modell. 22 5 2004 377 395
13. N. Holten-Andersen, M.J. Harrington, H. Birkedal, B.P. Lee, P.B. Messersmith, K.Y.C. Lee, and J.H. Waite pH-induced metal-ligand cross-links inspired by mussel yield self-healing polymer networks with near-covalent elastic moduli PNAS 108 7 2011 2651 2655
14. D.S. Hwang, H. Zeng, A. Masic, M.J. Harrington, J.N. Israelachvili, and J.H. Waite Protein- and metal-dependent interactions of a prominent protein in mussel adhesive plaques J. Biol. Chem. 285 33 2010 25850 25858
15. S. Keten, and M.J. Buehler Nanostructure and molecular mechanics of spider dragline silk protein assemblies J. R. Soc. Interface 7 53 2010 1709 1721
16. I. Krimm, C. Ostlund, B. Gilquin, J. Couprie, P. Hossenlopp, J.P. Mornon, G. Bonne, J.C. Courvalin, H.J. Worman, and S. Zinn-Justin The Ig-like structure of the c-terminal domain of lamin A/C, mutated in muscular dystrophies, cardiomyopathy, and partial lipodystrophy Structure 10 6 2002 811 823
17. T. Lazaridis, and M. Karplus Effective energy function for proteins in solution Proteins: Struct. Funct. Bioinf. 35 2 1999 133 152
18. B.P. Lee, J.L. Dalsin, and P.B. Messersmith Synthesis and gelation of DOPA-modified poly(ethylene glycol) hydrogels Biomacromolecules 3 5 2002 1038 1047
19. B.P. Lee, P.B. Messersmith, J.N. Israelachvili, and J.H. Waite Mussel-inspired adhesives and coatings Annu. Rev. Mater. Res. 41 41 2011 99 132
20. H. Lee, S.M. Dellatore, W.M. Miller, and P.B. Messersmith Mussel-inspired surface chemistry for multifunctional coatings Science 318 5849 2007 426 430
21. H. Lee, B.P. Lee, and P.B. Messersmith A reversible wet/dry adhesive inspired by mussels and geckos Nature 448 7151 2007 (338-U334)
22. H. Lee, N.F. Scherer, and P.B. Messersmith Single-molecule mechanics of mussel adhesion PNAS 103 35 2006 12999 13003
23. Q. Lin, D. Gourdon, C.J. Sun, N. Holten-Andersen, T.H. Anderson, J.H. Waite, and J.N. Israelachvili Adhesion mechanisms of the mussel foot proteins mfp-1 and mfp-3 PNAS 104 10 2007 3782 3786
24. M.T. Nelson, W. Humphrey, A. Gursoy, A. Dalke, L.V. Kale, R.D. Skeel, and K. Schulten NAMD: a parallel, object oriented molecular dynamics program Int. J. Supercomput. Appl. 10 4 1996 251 268
25. V.V. Papov, T.V. Diamond, K. Biemann, and J.H. Waite Hydroxyarginine- containing polyphenolic proteins in the adhesive plaques of the marine mussel Mytilus edulis J. Biol. Chem. 270 34 1995 20183 20192
26. M.S. Prowse, M. Wilkinson, J.B. Puthoff, G. Mayer, and K. Autumn Effects of humidity on the mechanical properties of gecko setae Acta Biomater. 7 2 2011 733 738
27. Z. Qin, and M.J. Buehler Computational and theoretical modeling of intermediate filament networks: structure, mechanics and disease Acta Mech. Sin. 28 4 2012 941 950
28. Z. Qin, and M.J. Buehler Cooperativity governs the size and structure of biological interfaces J. Biomech. 45 16 2012 2778 2783
29. Z. Qin, and M.J. Buehler Molecular mechanics of dihydroxyphenylalanine at a silica interface Appl. Phys. Lett. 101 8 2012 083702 083704
30. Z. Qin, and M.J. Buehler Impact tolerance in mussel thread networks by heterogeneous material distribution Nat. Commun. 4 2013 2187
31. Z. Qin, S. Cranford, T. Ackbarow, and M.J. Buehler Robustness-strength performance of hierachical alpha-helical protein filaments Int. J. Appl. Mech. 1 1 2009 85 112
32. Z. Qin, A. Gautieri, A.K. Nair, H. Inbar, and M.J. Buehler Thickness of hydroxyapatite nanocrystal controls mechanical properties of the collagen-hydroxyapatite interface Langmuir 28 4 2012 1982 1992
33. Z. Qin, A. Kalinowski, K.N. Dahl, and M.J. Buehler Structure and stability of the lamin A tail domain and HGPS mutant J. Struct. Biol. 175 3 2011 425 433
34. S.A. Redey, S. Razzouk, C. Rey, D. Bernache-Assollant, G. Leroy, M. Nardin, and G. Cournot Osteoclast adhesion and activity on synthetic hydroxyapatite, carbonated hydroxyapatite, and natural calcium carbonate: relationship to surface energies J. Biomed. Mater. Res. 45 2 1999 140 147
35. D. Sen, and M.J. Buehler Structural hierarchies define toughness and defect-tolerance despite simple and mechanically inferior brittle building blocks Sci. Rep. 1 2011 35
36. H. Shao, K.N. Bachus, and R.J. Stewart A water-borne adhesive modeled after the sandcastle glue of P. californica Macromol. Biosci. 9 5 2009 464 471
37. H. Silverman, and F. Roberto Understanding marine mussel adhesion Mar. Biotechnol. 9 6 2007 661 681
38. Y. Sugita, and Y. Okamoto Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 314 1-2 1999 141 151
39. K. Vanommeslaeghe, E. Hatcher, C. Acharya, S. Kundu, S. Zhong, J. Shim, E. Darian, O. Guvench, P. Lopes, I. Vorobyov, and A.D. MacKerell CHARMM general force field: a force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields J. Comput. Chem. 31 4 2010 671 690
40. J.H. Waite Adhesion a la Moule Integr. Comp. Biol. 42 6 2002 1172 1180
41. J.H. Waite, and X. Qin Polyphosphoprotein from the adhesive pads of Mytilus edulis Biochemistry 40 9 2001 2887 2893
42. M. Weinhold, S. Soubatch, R. Temirov, M. Rohlfing, B. Jastorff, F.S. Tautz, and C. Doose Structure and bonding of the multifunctional amino acid l-DOPA on Au(1 1 0) J. Phys. Chem. B 110 47 2006 23756 23769
43. M.P. Wenger, L. Bozec, M.A. Horton, and P. Mesquida Mechanical properties of collagen fibrils Biophys. J. 93 4 2007 1255 1263
44. M. Wiegemann Adhesion in blue mussels (Mytilus edulis) and barnacles (genus Balanus): mechanisms and technical applications Aquat. Sci. 67 2 2005 166 176