Guidelines for reporting quantitative mass spectrometry based experiments in proteomics

Journal of Proteomics

Volumn 95, Issue , 2013, Pages 84-88

  Martínez Bartolomé, Salvador ^a   Deutsch, Eric W ^b   Binz, Pierre Alain ^c   Jones, Andrew R ^d   Eisenacher, Martin ^e   Mayer, Gerhard ^e   Campos, Alex ^f   Canals, Francesc ^g   Bech Serra, Joan Josep ^g   Carrascal, Montserrat ^h   Gay, Marina ^h   Paradela, Alberto ^a   Navajas, Rosana ^a   Marcilla, Miguel ^a   Hernáez, María Luisa ⁱ   Gutiérrez Blázquez, María Dolores ⁱ   Velarde, Luis Felipe Clemente ⁱ   Aloria, Kerman ^j   Beaskoetxea, Jabier ^j   Medina Aunon, J Alberto ^a   Albar, Juan P ^a   more..

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

^b INSTITUTE FOR SYSTEMS BIOLOGY   (United States)

^c SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^d UNIVERSITY OF LIVERPOOL   (United Kingdom)

^e RUHR UNIVERSITY BOCHUM   (Germany)

^f Proteomics Platform   (Spain)

^g VALL D HEBRON UNIVERSITY HOSPITAL   (Spain)

^h INST D INVESTIGACIONS B   (Spain)

ⁱ UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

^j UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DATA ANALYSIS SOFTWARE; EXPERIMENTAL DESIGN; MASS SPECTROMETRY; MONITORING; PRACTICE GUIDELINE; PRIORITY JOURNAL; PROTEOMICS; QUANTITATIVE ANALYSIS; SELECTED REACTION MONITORING;

GUIDELINES AS TOPIC; MASS SPECTROMETRY; PROTEOMICS;

EID: 84888290429     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2013.02.026     Document Type: Article

References (10)

1. Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T, et al. The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. Mol Cell Proteomics. submitted for publication.
2. Orchard S., Hermjakob H., Apweiler R. The proteomics standards initiative. Proteomics 2003, 3:1374-1376.
3. Paradela A., Escuredo P.R., Albar J.P. Geographical focus. Proteomics initiatives in Spain: ProteoRed. Proteomics 2006, 6(Suppl. 2):73-76.
4. Martinez-Bartolome S., Blanco F., Albar J.P. Relevance of proteomics standards for the ProteoRed Spanish organization. J Proteomics 2010, 73:1061-1066.
5. Taylor C.F., Paton N.W., Lilley K.S., Binz P.A., Julian R.K., Jones A.R., et al. The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol 2007, 25:887-893.
6. Martens L., Chambers M., Sturm M., Kessner D., Levander F., Shofstahl J., et al. mzML-a community standard for mass spectrometry data. Mol Cell Proteomics 2011, 10. [R110.000133].
7. Jones A.R., Eisenacher M., Mayer G., Kohlbacher O., Siepen J., Hubbard S., et al. The mzIdentML data standard for mass spectrometry-based proteomics results. Mol Cell Proteomics 2012, 11. [M111.014381].
8. Deutsch E.W., Chambers M., Neumann S., Levander F., Binz P.A., Shofstahl J., et al. TraML: a standard format for exchange of selected reaction monitoring transition lists. Mol Cell Proteomics 2011, 11. [R111.015040].
9. Gibson F., Hoogland C., Martinez-Bartolome S., Medina-Aunon J.A., Albar J.P., Babnigg G., et al. The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative. Proteomics 2010, 10:3073-3081.
10. Vizcaino J.A., Martens L., Hermjakob H., Julian R.K., Paton N.W. The PSI formal document process and its implementation on the PSI website. Proteomics 2007, 7:2355-2357.