Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data

PLoS Computational Biology

Volumn 9, Issue 11, 2013, Pages

  Sikora Wohlfeld, Weronika ^a   Ackermann, Marit ^a   Christodoulou, Eleni G ^a   Singaravelu, Kalaimathy ^a   Beyer, Andreas ^a,b,c  

^a DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

^b CENTER FOR REGENERATIVE THERAPIES DRESDEN   (Germany)

^c UNIVERSITY OF COLOGNE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL METHODS; TRANSCRIPTION;

CHROMATIN IMMUNOPRECIPITATION; COMPARATIVE ASSESSMENT; EVALUATION OF COMPUTATIONAL METHODS; GENES IDENTIFICATION; HIGH RESOLUTION; PERFORMANCE; SCORING METHODS; SYSTEMATIC EVALUATION; TARGET GENES; TRANSCRIPTIONAL NETWORKS;

TRANSCRIPTION FACTORS;

TRANSCRIPTION FACTOR;

ARTICLE; CHROMATIN IMMUNOPRECIPITATION; COMPUTER ANALYSIS; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENE TARGETING; GENETIC ASSOCIATION; GENOME; PROTEIN BINDING; SEQUENCE ANALYSIS; VALIDATION PROCESS;

ALGORITHMS; ANIMALS; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; DATABASES, GENETIC; GENOME; GENOMICS; MICE; MODELS, STATISTICAL; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

EID: 84888266922     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003342     Document Type: Article

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