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Volumn 79, Issue 23, 2013, Pages 7491-7501

Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California current

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOHOPANEPOLYOLS; EVOLUTIONARY HISTORY; GENETIC RELATIONSHIPS; PHYSIOLOGICAL ROLES; SEDIMENTARY RECORDS; SQUALENE-HOPENE CYCLASE; STRUCTURAL DIVERSITY; STRUCTURAL VARIATIONS;

EID: 84888218013     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02367-13     Document Type: Article
Times cited : (29)

References (51)
  • 1
    • 33947274082 scopus 로고    scopus 로고
    • Rapid structural elucidation of composite bacterial hopanoids by atmospheric pressure chemical ionisation liquid chromatography/ion trap mass spectrometry
    • Talbot HM, Rohmer M, Farrimond P. 2007. Rapid structural elucidation of composite bacterial hopanoids by atmospheric pressure chemical ionisation liquid chromatography/ion trap mass spectrometry. Rapid Commun. Mass Spectrom. 21:880-892.
    • (2007) Rapid Commun. Mass Spectrom. , vol.21 , pp. 880-892
    • Talbot, H.M.1    Rohmer, M.2    Farrimond, P.3
  • 2
    • 11944267083 scopus 로고
    • Hopanoids. 1. Geohopanoids: the most abundant natural products on Earth?
    • Ourisson G, Albrecht P. 1992. Hopanoids. 1. Geohopanoids: the most abundant natural products on Earth? Acc. Chem. Res. 25:398-402.
    • (1992) Acc. Chem. Res. , vol.25 , pp. 398-402
    • Ourisson, G.1    Albrecht, P.2
  • 3
    • 0033551919 scopus 로고    scopus 로고
    • Archean molecular fossils and the early rise of eukaryotes
    • Brocks JJ, Logan GA, Buick R, Summons RE. 1999. Archean molecular fossils and the early rise of eukaryotes. Science 285:1033-1036.
    • (1999) Science , vol.285 , pp. 1033-1036
    • Brocks, J.J.1    Logan, G.A.2    Buick, R.3    Summons, R.E.4
  • 4
    • 0033527055 scopus 로고    scopus 로고
    • 2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis
    • Summons RE, Jahnke LL, Hope JM, Logan GA. 1999. 2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis. Nature 400:554-557.
    • (1999) Nature , vol.400 , pp. 554-557
    • Summons, R.E.1    Jahnke, L.L.2    Hope, J.M.3    Logan, G.A.4
  • 6
    • 77952728544 scopus 로고    scopus 로고
    • Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes
    • Welander PV, Coleman ML, Sessions AL, Summons RE, Newman DK. 2010. Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes. Proc. Natl. Acad. Sci. U. S. A. 107:8537-8542.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 8537-8542
    • Welander, P.V.1    Coleman, M.L.2    Sessions, A.L.3    Summons, R.E.4    Newman, D.K.5
  • 8
    • 70349088644 scopus 로고    scopus 로고
    • Hopanoids play a role in membrane integrity and pH homeostasis in Rhodopseudomonas palustris TIE-1
    • Welander PV, Hunter RC, Zhang L, Sessions AL, Summons RE, Newman DK. 2009. Hopanoids play a role in membrane integrity and pH homeostasis in Rhodopseudomonas palustris TIE-1. J. Bacteriol. 191:6145-6156.
    • (2009) J. Bacteriol. , vol.191 , pp. 6145-6156
    • Welander, P.V.1    Hunter, R.C.2    Zhang, L.3    Sessions, A.L.4    Summons, R.E.5    Newman, D.K.6
  • 9
    • 67749145240 scopus 로고    scopus 로고
    • Hopanoids are not essential for growth of Streptomyces scabies 87-22
    • Seipke RF, Loria R. 2009. Hopanoids are not essential for growth of Streptomyces scabies 87-22. J. Bacteriol. 191:5216-5223.
    • (2009) J. Bacteriol. , vol.191 , pp. 5216-5223
    • Seipke, R.F.1    Loria, R.2
  • 10
    • 84855415181 scopus 로고    scopus 로고
    • Hopanoid production is required for low-pH tolerance, antimicrobial resistance, and motility in Burkholderia cenocepacia
    • Schmerk CL, Bernards MA, Valvano MA. 2011. Hopanoid production is required for low-pH tolerance, antimicrobial resistance, and motility in Burkholderia cenocepacia. J. Bacteriol. 193:6712-6723.
    • (2011) J. Bacteriol. , vol.193 , pp. 6712-6723
    • Schmerk, C.L.1    Bernards, M.A.2    Valvano, M.A.3
  • 11
    • 77954312065 scopus 로고    scopus 로고
    • Hopanoid enrichment in a detergent resistant membrane fraction of Crocosphaera watsonii: implications for bacterial lipid raft formation
    • Sáenz JP. 2010. Hopanoid enrichment in a detergent resistant membrane fraction of Crocosphaera watsonii: implications for bacterial lipid raft formation. Org. Geochem. 41:853-856.
    • (2010) Org. Geochem. , vol.41 , pp. 853-856
    • Sáenz, J.P.1
  • 12
    • 84864721937 scopus 로고    scopus 로고
    • Discovery, taxonomic distribution, and phenotypic characterization of a gene required for 3-methylhopanoid production
    • Welander PV, Summons RE. 2012. Discovery, taxonomic distribution, and phenotypic characterization of a gene required for 3-methylhopanoid production. Proc. Natl. Acad. Sci. U. S. A. 109:12905-12910.
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 12905-12910
    • Welander, P.V.1    Summons, R.E.2
  • 13
    • 0035816478 scopus 로고    scopus 로고
    • Analysis of intact bacteriohopanepolyols from methanotrophic bacteria by reversed-phase high-performance liquid chromatographyatmospheric pressure chemical ionisation mass spectrometry
    • Talbot HM, Watson DF, Murrell JC, Carter JF, Farrimond P. 2001. Analysis of intact bacteriohopanepolyols from methanotrophic bacteria by reversed-phase high-performance liquid chromatographyatmospheric pressure chemical ionisation mass spectrometry. J. Chromatogr. A 921:175-185.
    • (2001) J. Chromatogr. A , vol.921 , pp. 175-185
    • Talbot, H.M.1    Watson, D.F.2    Murrell, J.C.3    Carter, J.F.4    Farrimond, P.5
  • 14
    • 0021259115 scopus 로고
    • Distribution of Hopanoid Triterpenes in Prokaryotes
    • Rohmer M, Bouvier-Nave P, Ourisson G. 1984. Distribution of Hopanoid Triterpenes in Prokaryotes. J. Gen. Microbiol. 130:1137-1150.
    • (1984) J. Gen. Microbiol. , vol.130 , pp. 1137-1150
    • Rohmer, M.1    Bouvier-Nave, P.2    Ourisson, G.3
  • 15
    • 80855130543 scopus 로고    scopus 로고
    • New constraints on the provenance of hopanoids in the marine geologic record: Bacteriohopanepolyols in marine suboxic and anoxic environments
    • Sáenz JP, Wakeham SG, Eglinton TI, Summons RE. 2011. New constraints on the provenance of hopanoids in the marine geologic record: Bacteriohopanepolyols in marine suboxic and anoxic environments. Org. Geochem. 42:1351-1362.
    • (2011) Org. Geochem. , vol.42 , pp. 1351-1362
    • Sáenz, J.P.1    Wakeham, S.G.2    Eglinton, T.I.3    Summons, R.E.4
  • 16
    • 33845977387 scopus 로고    scopus 로고
    • Aerobic methanotrophy in the oxic-anoxic transition zone of the Black Sea water column
    • Blumenberg M, Seifert R, Michaelis W. 2007. Aerobic methanotrophy in the oxic-anoxic transition zone of the Black Sea water column. Org. Geochem. 38:84-91.
    • (2007) Org. Geochem. , vol.38 , pp. 84-91
    • Blumenberg, M.1    Seifert, R.2    Michaelis, W.3
  • 18
    • 23844513558 scopus 로고    scopus 로고
    • Targeted genomic detection of biosynthetic pathways: anaerobic production of hopanoid biomarkers by a common sedimentary microbe
    • Fischer WW, Summons RE, Pearson A. 2005. Targeted genomic detection of biosynthetic pathways: anaerobic production of hopanoid biomarkers by a common sedimentary microbe. Geobiology 3:33-40.
    • (2005) Geobiology , vol.3 , pp. 33-40
    • Fischer, W.W.1    Summons, R.E.2    Pearson, A.3
  • 20
    • 0037148784 scopus 로고    scopus 로고
    • Squalene-hopene cyclase: catalytic mechanism and substrate recognition
    • Hoshino T, Sato T. 2002. Squalene-hopene cyclase: catalytic mechanism and substrate recognition. Chem. Commun. 2002(4):291-301.
    • (2002) Chem. Commun , vol.2002 , Issue.4 , pp. 291-301
    • Hoshino, T.1    Sato, T.2
  • 21
    • 60749104423 scopus 로고    scopus 로고
    • Distribution of microbial terpenoid lipid cyclases in the global ocean metagenome
    • Pearson A, Rusch DB. 2009. Distribution of microbial terpenoid lipid cyclases in the global ocean metagenome. ISME J. 3:352-363.
    • (2009) ISME J. , vol.3 , pp. 352-363
    • Pearson, A.1    Rusch, D.B.2
  • 24
    • 0038583874 scopus 로고    scopus 로고
    • Bottom water renewal in the Santa Barbara Basin
    • Bograd SJ, Schwing FB. 2002. Bottom water renewal in the Santa Barbara Basin. J. Geophys. Res. 107:1-9.
    • (2002) J. Geophys. Res. , vol.107 , pp. 1-9
    • Bograd, S.J.1    Schwing, F.B.2
  • 25
    • 72449152260 scopus 로고    scopus 로고
    • Distinguishing between water column and sedimentary denitrification in the Santa Barbara Basin using the stable isotopes of nitrate
    • doi:10.1029/2002GC000384.
    • Sigman DM, Robinson R, Knapp AN, van Geen A, McCorkle DC, Brandes JA, Thunell RC. 2003. Distinguishing between water column and sedimentary denitrification in the Santa Barbara Basin using the stable isotopes of nitrate. Geochem. Geophys. Geosystems 4:1040.doi:10.1029/2002GC000384.
    • (2003) Geochem. Geophys. Geosystems , vol.4 , pp. 1040
    • Sigman, D.M.1    Robinson, R.2    Knapp, A.N.3    van Geen, A.4    McCorkle, D.C.5    Brandes, J.A.6    Thunell, R.C.7
  • 26
    • 84888252835 scopus 로고    scopus 로고
    • Exploring the distribution and physiological roles of bacterial membrane lipids in the marine environment
    • Ph. D. thesis. MITWHO Joint Program, Cambridge, MA
    • Sáenz JP. 2010. Exploring the distribution and physiological roles of bacterial membrane lipids in the marine environment. Ph. D. thesis. MITWHO Joint Program, Cambridge, MA.
    • (2010)
    • Sáenz, J.P.1
  • 27
    • 0345505746 scopus 로고    scopus 로고
    • Atmospheric pressure chemical ionisation reversed-phase liquid chromatography/ion trap mass spectrometry of intact bacteriohopanepolyols
    • Talbot HM, Squier AH, Keely BJ, Farrimond P. 2003. Atmospheric pressure chemical ionisation reversed-phase liquid chromatography/ion trap mass spectrometry of intact bacteriohopanepolyols. Rapid Commun. Mass Spectrom. 17:728-737.
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 728-737
    • Talbot, H.M.1    Squier, A.H.2    Keely, B.J.3    Farrimond, P.4
  • 28
    • 23744498874 scopus 로고    scopus 로고
    • Isolation and Characterization of a Genetically Tractable Photoautotrophic Fe (II)-Oxidizing Bacterium, Rhodopseudomonas palustris Strain TIE-1
    • Jiao Y, Kappler A, Croal LR, Newman DK. 2005. Isolation and Characterization of a Genetically Tractable Photoautotrophic Fe (II)-Oxidizing Bacterium, Rhodopseudomonas palustris Strain TIE-1. Appl. Environ. Microbiol. 71:4487-4496.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4487-4496
    • Jiao, Y.1    Kappler, A.2    Croal, L.R.3    Newman, D.K.4
  • 30
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 31
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame C, Higgins DG, Heringa J. 2000. T-Coffee: A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302:205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 32
    • 67650757433 scopus 로고    scopus 로고
    • TrimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25:1972-1973.
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutiérrez, S.1    Silla-Martínez, J.M.2    Gabaldón, T.3
  • 33
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web servers
    • Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 57:758-771.
    • (2008) Syst. Biol. , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 34
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: improvements in performance and usability
    • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30:772-780.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 35
    • 77958610660 scopus 로고    scopus 로고
    • Pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
    • doi:10.1186/1471-2105-11-538.
    • Matsen FA, Kodner RB, Armbrust EV. 2010. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 11:538.doi:10.1186/1471-2105-11-538.
    • (2010) BMC Bioinformatics , vol.11 , pp. 538
    • Matsen, F.A.1    Kodner, R.B.2    Armbrust, E.V.3
  • 36
    • 78751558547 scopus 로고    scopus 로고
    • Creating the CIPRES Science Gateway for inference of large phylogenetic trees
    • 2010 Gateway Computing Environments Workshop, 14 November 2010, New Orleans, LA
    • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees, p 1-8. 2010 Gateway Computing Environments Workshop, 14 November 2010, New Orleans, LA.
    • (2010) , pp. 1-8
    • Miller, M.A.1    Pfeiffer, W.2    Schwartz, T.3
  • 38
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre
    • Konstantinidis KT, BraffJ, Karl DM, DeLong EF. 2009. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Appl. Environ. Microbiol. 75:5345-5355.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    DeLong, E.F.4
  • 40
    • 0024218962 scopus 로고
    • Major role of bacteria in biogeochemical fluxes in the ocean's interior
    • Cho BC, Azam F. 1988. Major role of bacteria in biogeochemical fluxes in the ocean's interior. Nature 332:441-443.
    • (1988) Nature , vol.332 , pp. 441-443
    • Cho, B.C.1    Azam, F.2
  • 42
    • 34547116444 scopus 로고    scopus 로고
    • Bacterial populations recorded in diverse sedimentary biohopanoid distributions
    • Talbot HM, Farrimond P. 2007. Bacterial populations recorded in diverse sedimentary biohopanoid distributions. Org. Geochem. 38:1212-1225.
    • (2007) Org. Geochem. , vol.38 , pp. 1212-1225
    • Talbot, H.M.1    Farrimond, P.2
  • 43
    • 84876935522 scopus 로고    scopus 로고
    • Bacteriohopanepolyols record stratification, nitrogen fixation and other biogeochemical perturbations in Holocene sediments of the central Baltic Sea
    • Blumenberg M, Berndmeyer C, Moros M, Muschalla M, Schmale O, Thiel V. 2013. Bacteriohopanepolyols record stratification, nitrogen fixation and other biogeochemical perturbations in Holocene sediments of the central Baltic Sea. Biogeosciences 10:2725-2735.
    • (2013) Biogeosciences , vol.10 , pp. 2725-2735
    • Blumenberg, M.1    Berndmeyer, C.2    Moros, M.3    Muschalla, M.4    Schmale, O.5    Thiel, V.6
  • 44
    • 46449104196 scopus 로고    scopus 로고
    • Expanding oxygen-minimum zones in the tropical oceans
    • Stramma L, Johnson GC, Sprintall J, Mohrholz V. 2008. Expanding oxygen-minimum zones in the tropical oceans. Science. 320:655-658.
    • (2008) Science. , vol.320 , pp. 655-658
    • Stramma, L.1    Johnson, G.C.2    Sprintall, J.3    Mohrholz, V.4
  • 45
    • 41849142283 scopus 로고    scopus 로고
    • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
    • Stevens H, Ulloa O. 2008. Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ. Microbiol. 10:1244-1259.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1244-1259
    • Stevens, H.1    Ulloa, O.2
  • 50
    • 84875875462 scopus 로고    scopus 로고
    • The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer
    • doi:10.3389/fmicb.2013.00027.
    • Lücker S, Nowka B, Rattei T, Spieck E, Daims H. 2013. The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer. Front. Microbiol. 4:27.doi:10.3389/fmicb.2013.00027.
    • (2013) Front. Microbiol. , vol.4 , pp. 27
    • Lücker, S.1    Nowka, B.2    Rattei, T.3    Spieck, E.4    Daims, H.5
  • 51
    • 77956487319 scopus 로고    scopus 로고
    • Decoupling of bio-and geohopanoids in sediments of the Benguela Upwelling System (BUS)
    • Blumenberg M, Mollenhauer G, Zabel M, Reimer A, Thiel V. 2010. Decoupling of bio-and geohopanoids in sediments of the Benguela Upwelling System (BUS). Org. Geochem. 41:1119-1129.
    • (2010) Org. Geochem. , vol.41 , pp. 1119-1129
    • Blumenberg, M.1    Mollenhauer, G.2    Zabel, M.3    Reimer, A.4    Thiel, V.5


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