Rapid alterations of DNA sequence and cytosine methylation induced by somatic hybridization between Brassica oleracea L. var. italica and Brassica nigra (L.) Koch

Plant Cell, Tissue and Organ Culture

Volumn 115, Issue 3, 2013, Pages 395-405

  Sheng, Xiaoguang ^a   Zhao, Zhenqing ^a   Yu, Huifang ^a   Wang, Jiansheng ^a   Gu, Honghui ^a  

^a INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

Author keywords

B. nigra; B. oleracea; DNA methylation; Genome constitution; Somatic hybrids

Indexed keywords

ALLOTETRAPLOID HYBRIDS; AMPLIFIED FRAGMENT LENGTH POLYMORPHISMS; B. NIGRA; B. OLERACEA; DNA METHYLATION; GENOMIC IN SITU HYBRIDIZATION; SIMPLE SEQUENCE REPEATS; SOMATIC HYBRIDS;

ALKYLATION; DNA SEQUENCES; GENES; PLANTS (BOTANY); VALUE ENGINEERING;

METHYLATION;

BRASSICA NIGRA; BRASSICA OLERACEA; BRASSICA OLERACEA VAR. ITALICA;

EID: 84888134605     PISSN: 01676857     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11240-013-0371-6     Document Type: Article

References (65)

1. Banaei Mughaddam AM, Fuchs J, Czauderna T, Houben A, Mette MF (2010) Intraspecifc hybrids of Arabidopsis thaliana reveled no gross alterations in endopolyploidy, DNA methylation, histone modifications and transcript levels. Theor Appl Genet 120: 215-226.
2. Bansal P, Banga S, Banga SS (2012) Heterosis as investigated in terms of polyploidy and genetic diversity using designed Brassica juncea amphiploid and its progenitor diploid species. PLoS ONE 7(2): e29607.
3. Bassam BJ, Caetno-Anollés G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196(1): 80-83.
4. Cai YF, Xiang FN, Zhi DY, Liu H, Xia GM (2007) Genotyping of somatic hybrids between Festuca arundinacea Schred. and Triticum aestivum L. Plant Cell Rep 26: 1809-1819.
5. Collonnier C, Mulya K, Fock I, Mariska I, Servaes A, Vedel F, Siljak-Yakovlev S, Souvannavong V, Ducreux G, Sihachakr D (2001) Source of resistance against Ralstonia solanacearum in fertile somatic hybrids of eggplant (Solanum melongena L.) with Solanum aethiopicum L. Plant Sci 160: 301-313.
6. Cui HF, Yu ZY, Deng JY, Gao X, Sun Y, Xia GM (2009) Introgression of bread wheat chromatin into tall wheatgrass via somatic hybridization. Planta 229(2): 323-330.
7. Deng JY, Cui HF, Zhi DY, Zhou CN, Xia GM (2007) Analysis of remote asymmetric somatic hybrids between common wheat and Arabidopsis thaliana. Plant Cell Rep 26: 1233-1241.
8. Du XZ, Ge XH, Yao XC, Zhao ZG, Li ZY (2009) Production and cytogenetic characterization of intertribal somatic hybrids between Brassica napus and Isatis indigotica and backcross progenies. Plant Cell Rep 28: 1105-1113.
9. Fan HH, Li TC, Guan L, Li ZP, Guo N, Cai YP, Lin Y (2012) Effects of exogenous nitric oxide on antioxidation and DNA methylation of Dendrobium huoshanense grown under drought stress. Plant Cell, Tissue Organ Cult 109(2): 307-314.
10. Fu CH, Chen CL, Guo WW, Deng XX (2004) GISH, AFLP and PCR-RFLP analysis of an intergeneric somatic hybrid combining Goutou sour orange and Poncirus trifoliata. Plant Cell Rep 23: 391-396.
11. Gaeta RT, Pires JC, Iniguez-Luy F, Leon E, Osborn TC (2007) Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell 19(11): 3403-3417.
12. Geng XX, Chen S, Astarini IA, Yan GJ, Tian E, Meng J, Li ZY, Ge XH, Nelson MN, Mason AS, Pradhan A, Zhou WJ (2013) Doubled haploids of novel trigenomic Brassica derived from various interspecific crosses. Plant Cell, Tissue Organ Cult 113: 501-511.
13. Hansen LN, Earle ED (1997) Somatic hybrids between Brassica oleracea L. and Sinapis alba L. with resistance to Alternaria brassicae (Berk) Sacc. Theor Appl Genet 94: 1078-1085.
14. Hu Q, Hansen L, Laursen J, Dixelius C, Andersen S (2002) Intergeneric hybrids between Brassica napus and Orychophragmus violaceus containing traits of agronomic importance for oilseed rape breeding. Theor Appl Genet 105(6-7): 834-840.
15. Jourdan P, Salazar E (1993) Brassica carinata resythesized by protoplast fusion. Theor Appl Genet 86: 567-572.
16. Kaity A, Drew RA, Ashmore SE (2013) Genetic and epigenetic integrity assessment of acclimatised papaya plants regenerated directly from shoot-tips following short- and long-term cryopreservation. Plant Cell, Tissue Organ Cult 112(1): 75-86.
17. Kielkowska A, Havey MJ (2012) In vitro flowering and production of viable pollen of cucumber. Plant Cell, Tissue Organ Cult 109(1): 73-82.
18. Leitch AR, Schwarzacher T, Jackson D, Leitch IJ (1994) Microscopy Handbook No. 27. In situ hybridization: a practical guide. Bios ScientiWc, Oxford.
19. Li G, Quiros CF (2001) Sequence-related Amplified Polymorphism (SRAP) a new maker system based on a simple, PCR reaction: its application to mapping, and gene tagging in Brassica. Theor Appl Genet 103: 455-461.
20. Li AM, Wei CX, Jiang JJ, Zhang YT, Snowdon RJ, Wang YP (2009) Phenotypic variation in progenies from somatic hybrids between Brassica napus and Sinapis alba. Euphytica 170: 289-296.
21. Li XL, Guo WW, Wang B, Li XS, Chen HG, Wei LH, Wang YJ, Wu JS, Long H (2010) Instability of chromosome number and DNA methylation variation induced by hybridization and amphidiploid formation between Raphanus sativus L. and Brassica alboglabra Bailey. BMC Plant Biol 10: 207.
22. Liu JH, Xu XY, Deng XX (2005) Intergeneric somatic hybridization and its application to crop genetic improvement. Plant Cell, Tissue Organ Cult 82: 19-44.
23. Liu H, Liu SW, Xia GM (2009) Generation of high frequency of novel alleles of the high molecular weight glutenin in somatic hybridization between bread wheat and tall wheatgrass. Theor Appl Genet 118: 1193-1198.
24. Lowe AJ, Moule C, Trick M, Edwards KJ (2004) Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor Appl Genet 108(6): 1103-1112.
25. Lukens LN, Pires JC, Leon E, Vogelzang R, Oslach L, Osborn T (2006) Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol 140(1): 336-348.
26. Madlung A, Tyagi AP, Watson B, Jiang H, Kagochi T, Doerge RW, Martienssen R, Comai L (2005) Genomic changes in synthetic Arabidopsis polyploids. Plant J 41(2): 221-230.
27. Meyer P, Niedenhof I, Lohuis M (1994) Evidence for cytosine methylation of non-symmetrical sequences in transgenic Petunia hybrida. EMBO J 13: 2084-2088.
28. Murashige T, Skoog F (1962) A revised media for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 5: 473-479.
29. Narasimhulu SB, Kirti PB, Prakash S, Chopra VL (1992) Resynthesis of Brassica carinata by protoplast fusion of a novel cytoplasmic hybrid. Plant Cell Rep 11: 428-443.
30. Noyer JL, Causse S, Tomekpe K, Bouet A, Baurens FC (2005) A new image of plantain diversity assessed by SSR, AFLP and MSAP markers. Genetica 124(1): 61-69.
31. Orzechowska M, Stepien K, Kaminska T, Siwinska D (2013) Chromosome variations in regenerants of Arabidopsis thaliana derived from 2- and 6-week-old callus detected using flow cytometry and FISH analyses. Plant Cell, Tissue Organ Cult 112(3): 263-273.
32. Panaud O, Chen X, McCouch SR (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252: 597-607.
33. Rimmer SR, van den Berg CGJ (1992) Resistance of oilseed Brassica spp. to blackleg caused by Leptosphaeria maculans. Can J Plant Pathol 14: 56-66.
34. Ryschka U, Schumann G, Klocke E, Scholze P (1996) Somatic hybridization in Brassicaceae. Acta Hort 407: 201-208.
35. Saghai-Maroof MA, Soliman KM, Jorgenson RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley. Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
36. Salmon A, Ainouche ML, Wendel JF (2005) Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol Ecol 14(4): 1163-1175.
37. Scholze P, Kramer R, Ryschka U, Klocke E, Schumann G (2010) Somatic hybrids of vegetable brassicas as source for new resistances to fungal and virus diseases. Euphytica 176: 1-14.
38. Serraf I, Tizroutine S, Chaput MH, Allot M, Mussio I, Sihachakr D, Rossignol L, Ducreux D (1994) Production and characterisation of intergeneric somatic hybrids through protoplast electrofusion between potato (Solanum tuberosum) and Lycopersison pennellii. Plant Cell, Tissue Organ Cult 37: 137-144.
39. Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA (2001) Sequence elimilaion and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13(8): 1749-1759.
40. Sheng XG, Liu F, Zhu YL, Zhao H, Zhang L, Chen B (2008) Production and analysis of intergeneric somatic hybrids between Brassica oleracea and Matthiola incana. Plant Cell, Tissue Organ Cult 92: 55-62.
41. Sigareva MA, Earle ED (1999) Somatic hybrids between Camelina sativa and rapid-cycling Brassica oleracea. Theor Appl Genet 98(1): 164-170.
42. Sihachakr D, Daunay MC, Serraf I, Chaput MH, Mussio I, Haicour R, Rossignol L, Ducreux G (1994) Somatic hybridization of eggplant (Solanum melongena L.) with its close and wild relatives. In: Bajaj YPS (ed) Biotechnology in agriculture and forestry, somatic hybridisation in crop improvement I, vol 27. Springer, Berlin, pp 255-278.
43. Sundberg E, Glimelius K (1986) A method for production of interspecific hybrids within Brassiceae via somatic hybridization, using resynthesis of Brassica napus as a model. Plant Sci 43: 155-162.
44. Taylor JD, Conway J, Roberts SJ, Astley D, Vicente JG (2002) Sources and origin of resistance to Xanthomonas campestris pv. campestris in Brassica genomes. Phytopathology 92: 105-111.
45. Tu YQ, Sun J, Liu Y, Ge XH, Zhao ZG, Yao XC, Li ZY (2008) Production and characterization of intertribal somatic hybrids of Raphanus sativus and Brassica rapa with dye and medicinal plant Isatis indigotica. Plant Cell Rep 27: 873-883.
46. Ulian EC, Magill JM, Magll CW, Smith RH (1996) DNA methylation and expression of NPT II in transgenic petunias and progeny. Theor Appl Genet 92: 976-981.
47. Vasilenko MI, Komarnitskii IK, Sakhno LA, Gleba II, Kuchuk NV (2003) Obtaining and analysis of intergeneric somatic hybrids between Brassica napus and "albino" line of Orychophragmus violaceus. Tsitol Genet 37: 3-10.
48. Vos P, Hogers R, Bleeker M, Reijans M, Hornes M, Friters A, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23(21): 4407-4414.
49. Waara S, Glimelius K (1995) The potential of somatic hybridization in crop breeding. Euphytica 85: 217-233.
50. Wang YP, Sonntag K, Rudloff E (2003) Development of rapeseed with high erucic acid content by asymmetric somatic hybridization between Brassica napus and Crambe abyssinica. Theor Appl Genet 106: 1147-1155.
51. Wang T, Xu SS, Harris MO, Hu J, Liu LW, Cai XW (2006) Genetic characterization and molecular mapping of Hessian fly resistance genes derived from Aegilops tauschii in synthetic wheat. Theor Appl Genet 113: 611-618.
52. Wang MQ, Zhao JS, Peng ZY, Guo W, Wang Y, Wang L, Xia GM (2008) Chromosomes are eliminated in the symmetric fusion between Arabidopsis thaliana L. and Bupleurum scorzonerifolium Willd. Plant Cell, Tissue Organ Cult 92: 121-130.
53. Wang GX, Tang Y, Yan H, Sheng XG, Hao WW, Zhang L, Lu K, Liu F (2011) Production and characterization of interspecific somatic hybrids between Brassica oleracea var. botrytis and B. nigra and their progenies for the selection of advanced pre-breeding materials. Plant Cell Rep 30: 1811-1821.
54. Wang J, Jiang JJ, Wang YP (2013) Protoplast fusion for crop improvement and breeding in China. Plant Cell, Tissue Organ Cult 112: 131-142.
55. Wei W, Li Y, Wang L, Liu S, Yan X, Mei D, Li Y, Xu Y, Peng P, Hu Q (2010) Development of a novel Sinapis arvensis disomic addition line in Brassica napus containing the restorer gene for Nsa CMS and improved resistance to Sclerotinia sclerotiorum and pod shattering. Theor Appl Genet 120: 1089-1097.
56. Westman AL, Kresovich S, Dickson MH (1999) Regional variation in Brassica nigra and other weedy crucifers for disease reaction to Alternaria brassicicola and Xanthomonas campestris pv. campestris. Euphytica 106: 253-259.
57. Williams PH (1980) Black rot: a continuing threat to world crucifers. Plant Dis 64: 736-742.
58. Xia GM (2009) Progress of chromosome engineering mediated by asymmetric somatic hybridization. J Genet Genomics 36(9): 547-556.
59. Xia GM, Xiang FN, Zhou AF, Wang H, Chen HM (2003) Asymmetric somatic hybridization between wheat (Triticum aestivum L.) and Agropyron elongatum (Host) Nevishi. Thero Appl Genet 107: 299-305.
60. Xiong LZ, Xu CG, Saghai Maroof MA, Zhang QF (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261(3): 439-446.
61. Xu XY, Liu JH, Deng XX (2004) Production and characterization of intergeneric diploid cybrids derived from symmetric fusion between Microcitrus papuana Swingle and sour orange (Citrus aurantium). Euphytica 136: 115-123.
62. Xu YH, Zhong L, Wu XM, Fang XP, Wang JB (2009) Rapid alterations of gene expression and cytosine methylation in newly synthesized Brassica napus allopolyploids. Planta 229: 471-483.
63. Zhong XB, Hans de Jong J, Zabel P (1996) Preparation of tomato meiotic pachytene and mitotic metaphase chromosomes suitable for fluorescence in situ hybridization (FISH). Chromosome Res 4: 24-28.
64. Zhou A, Xia G, Zhang X, Chen H, Hu H (2001) Analysis of chromosomal and organellar DNA of somatic hybrids between Triticum aestiuvm and Haynaldia villosaSchur. Mol Genet Genomics 265: 387-393.
65. Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S (2006) Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 39: 61-69.