Chromosome variations in regenerants of Arabidopsis thaliana derived from 2- and 6-week-old callus detected using flow cytometry and FISH analyses

Plant Cell, Tissue and Organ Culture

Volumn 112, Issue 3, 2013, Pages 263-273

  Orzechowska, Maja ^a   Stępień, Katarzyna ^a   Kamińska, Teresa ^a   Siwińska, Dorota ^a  

^a UNIVERSITY OF SILESIA   (Poland)

Author keywords

Chromosomal aberrations; Flow cytometry; Fluorescent in situ hybridization; Organogenesis

Indexed keywords

CHROMOSOMES; FISH; FLOW CYTOMETRY; FLUORESCENCE;

ARABIDOPSIS THALIANA; CHROMOSOMAL ABERRATION; CHROMOSOMAL REARRANGEMENT; CHROMOSOMAL TRANSLOCATIONS; CHROMOSOME COUNTING; FLOW CYTOMETRIC MEASUREMENT; FLUORESCENT IN SITU HYBRIDIZATION; ORGANOGENESIS;

PLANTS (BOTANY);

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84874224743     PISSN: 01676857     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11240-012-0232-8     Document Type: Article

References (47)

1. Akama K, Shiraishi H, Ohta S, Nakamura K, Okada K, Shimura Y (1992) Efficient transformation of Arabidopsis thaliana: comparison of the efficiences with various organs, plant ecotypes and Agrobacterium strains. Plant Cell Rep 12: 7-11.
2. Bairu MW, Aremu AO, van Staden J (2011) Somaclonal variation in plants: causes and detection methods. Plant Growth Regul 63(2): 147-173.
3. Brutovská R, Čellárová E, Doležel J (1998) Cytogenetic variability of in vitro regenerated Hypericum perforatum L. plants and their seed progenies. Plant Sci 133: 221-229.
4. Candela M, Velázquez L, De La Cruz B, Sendino AM, De La Peňa A (2001) Differences in in vitro plant regeneration ability among four Arabidopsis thaliana ecotypes. In Vitro Cell Dev Biol-Plant 37: 638-643.
5. Cardone S, Sawatani P, Rush P, Garcia AM, Poggio L, Schrauf G (2009) Karyological studies in Deschampsia Antarctica Desv. (Poaceae). Polar Biol 32: 427-433.
6. Christianson ML, Warnick DA (1983) Competence and determination in the process of in vitro shoot organogenesis. Dev Biol 95: 288-293.
7. Clarindo WR, de Carvalho CR, Araújo FS, de Abreu IS, Otoni WC (2008) Recovering polyploid papaya in vitro regenerants as screened by flow cytometry. Plant Cell Tiss Organ Cult 92: 207-214.
8. D'Amato F (1989) Polyploidy in cell differentiation. Caryologia 42(3-4): 183-211.
9. D'Amato F (1995) Aneusomaty in vivo and in vitro in higher plants. Caryologia 48(2): 85-103.
10. Do G-S, Seo B-B, Ko J-M, Lee S-H, Pak J-H, Kim I-S, Song S-D (1999) Analysis of somaclonal variation through tissue culture and chromosomal localization of rDNA sites by fluorescent in situ hybridization in wild Allium tuberosum and a regenerated variant. Plant Cell Tiss Organ Cult 57: 113-119.
11. Do G-S, Seo B-B, Pak J-H, Kim I-S, Song S-D (2000) Karyotypes of three somaclonal variants and wild Plants of Allium tuberosum by bicolor FISH. J Plant Biol 43(3): 143-148.
12. Dolezel J, Greilhuber J, Lucretti S, Meister A, Lysak MA, Nardi L (1998) Plant genome size estimation by flow cytometry: inter-laboratory comparison. Ann Bot 82: 17-26.
13. Duncan RE (1945) Production of variable aneuploid numbers of chromosomes within the root tips of Paphiopedilum wardii. Amer J Bot 32: 506-509.
14. Feldmann KA, Marks MD (1986) Rapid and efficient regeneration of plants from explants of Arabidopsis thaliana. Plant Sci 47: 63-69.
15. Fransz P, Armstrong S, Alonso-Blanco C, Fischer TC, Torres-Ruiz RA, Jones G (1998) Cytogenetics for the model system Arabidopsis thaliana. Plant J 13(6): 867-876.
16. Fras A, Maluszynska J (2003) Regeneration of diploid and tetraploid of plants of Arabidopsis thaliana via callus. Acta Biol Crac Ser Bot 45(2): 145-152.
17. Fras A, Juchimiuk J, Siwinska D, Maluszynska J (2007) Cytological events in explants of Arabidopsis thaliana during early callogenesis. Plant Cell Rep 26: 1933-1939.
18. Gaj MD (2001) Direct somatic embryogenesis as a rapid efficient system for in vitro regeneration of Arabidopsis thaliana. Plant Cell Tiss Organ Cult 64: 39-46.
19. Galbraith DW, Harkins KR, Knapp S (1991) Systemic endopolyploidy in Arabidopsis thaliana. Plant Physiol 96: 985-989.
20. Gamborg OL, Miler RA, Ojima K (1968) Nutrient requirement of suspension cultures of soybean root cells. Exp Cell Res 50: 151-158.
21. Gerlach WL, Dyer TA (1980) Sequence organization of the repeating units in the nucleus of wheat which contain 5S rRNA genes. Nucleic Acids Res 11: 4851-4865.
22. Hasterok R, Wolny E, Hosiawa M, Kowalczyk M, Kulak-Ksiazczyk S, Ksiazczyk T, Heneen WK, Maluszynska J (2006) Comparative analysis of rDNA distribution in chromosomes of various species of Brassicaceae. Ann Bot 97: 205-216.
23. Jain MS (2001) Tissue-culture derived variation in crop improvement. Euphytica 118: 153-166.
24. Jelenić S, Berljak J, Papeš D, Jelaska S (2001) Mixoploidy and chimeric structures in somaclones of potato (Solanum tuberosum L.) cv Bintje. Food Technol. Biotechnol 39(1): 13-17.
25. Jiang C, Mithani A, Gan X, Belfield EJ, Klingler JP, Zhu J-K, Ragoussis J, Mott R, Harberd NP (2011) Regenerant Arabidopsis lineages display a distinct genome-wide spectrum of mutations conferring variant phenotypes. Curr Biol 21: 1385-1390.
26. Jin S, Mushke R, Zhu H, Tu L, Zhang Y, Zhang X (2008) Detection of somaclonal variation of cotton (Gosypium hirsutum) using cytogenetics, flow cytometry and molecular markers. Plat Cell Rep 27: 1303-1316.
27. Karp A (1995) Somaclonal variation as a tool for crop improvement. Euphytica 85: 295-302.
28. Kharabian A, Darabi A (2005) Characterization of some chromosomal aberrations in regenerated rice plants. Plant Cell Tiss Organ Cult 83: 161-168.
29. Kunitake H, Nakashima T, Mori K, Tanaka M (1998) Somaclonal and chromosomal effect of genotype, ploidy and culture duration in Asparagus officinalis L. Euphytica 102: 309-316.
30. Lee M, Phillips RL (1988) The chromosomal basic of somaclonal variation. Ann. Rev. Plant Physiol. Plant Mol Biol 39: 413-437.
31. Lema-Ruminska J (2011) Flow cytometric analysis of somatic embryos, shoots, and calli of the cactus Copiapoa tenuissima Ritt. Forma monstruosa. Plant Cell Tiss Organ Cult 106: 531-535.
32. Lysak MA, Fransz PF, Ali HBM, Schubert I (2001) Chromosome painting in Arabidopsisthaliana. Plant J 28(6): 689-697.
33. Mallón R, Rodríguez-Oubiňa J, González ML (2010) In vitro propagation of the endangered plant Centaurea ultreiae: assessment of genetic stability by cytological studies, flow cytometry and RAPD analysis. Plant Cell Tiss Organ Cult 101: 31-39.
34. Molnar-Lang M, Linc G, Friebe BR, Sutka J (2000) Detection of wheat-barley translocations by genomic in situ hybridization in derivatives of hybrids multiplied in vitro. Euphytica 112: 117-123.
35. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plantarum 15: 473-497.
36. Negrutiu I (1976) In vitro morphogenesis in Arabidopsis thaliana. Arabidopsis Inf Serv 12: 27-29.
37. Pellicer J, Garcia S, Garnatje T, Dariimaa S, Korobkov AA, Vallès J (2007) Chromosome numbers in Artemisia (Asteraceae, Anthemidaeae) species and genome size variation in its subgenus Dracunculus: karyological, systematic and phylogenetic implication. Chromosome Botany 2: 45-53.
38. Peschke VM, Phillips RL (1992) Genetic implications of somaclonal variation in plants. Adv Gen 30: 41-66.
39. Phillips RL, Kaeppler SM, Olhoft P (1994) Genetic instability of plant tissue cultures: breakdown of normal controls. Proc Nat Acad Sci USA 91: 5222-5226.
40. Pontaroli AC, Camadro EL (2005) Somaclonal variation in Asparagus officinalis plants regenerated by organogenesis from long term callus cultures. Gen Mol Biol 28(3): 423-430.
41. Prado MJ, Rodriguez E, Rey L, González MV, Santos C, Rey M (2010) Detection of somaclonal variants in somatic embryogenesis-regenerated plants of Vitis vinifera by flow cytometry and microsatellite markers. Plant Cell Tiss Cult 103: 49-59.
42. Sree Ramulu K, Dijkhuis P, Roest S (1983) Phenotypic variation and ploidy level of plants regenerated from protoplasts of tetraploid potato (Solanum tuberosum L. cv. 'Bintje'). Theor Appl Genet 65: 329-338.
43. Unfried I, Gruendler P (1990) Nucleotide sequence of the 5. 8S and 25S rRNA genes and the internal transcribed spacers from Arabidopsis thaliana. Nucleic Acids Res 18: 4011.
44. Valvekens D, van Montagu M, van Lijsebettens M (1988) Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci USA 85: 5536-5540.
45. van den Bulk RW, Löffler HJM, Lindhout WH, Koornneef M (1990) Somaclonal variation in tomato: effect of explant source and a comparison with chemical mutagenesis. Theor Appl Genet 80: 817-825.
46. Zhao J, Cui J, Liu J, Liao F, Henny R, Chen J (2012) Direct somatic embryogenesis from leaf and petiole explants of Spathiphyllum 'Supreme' and analysis of regenerants using flow cytometry. Plant Cell Tiss Organ Cult. doi: 10. 1007/s11240-012-0146-5.
47. Ziauddin A, Kasha KJ (1990) Long-term callus cultures of diploid barley (Hordeum vulgare). II. Effect of auxins on chromosomal status of cultures and regeneration of plants. Euphytica 48: 279-286.