-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, and Lipman D. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research 1997; 25: 3899-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3899-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
2
-
-
0032952229
-
-
Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer EL. Nucleic Acids Research 1999; 27: 260-262.
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 260-262
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Finn, R.D.5
Sonnhammer, E.L.6
-
3
-
-
0033977962
-
Scop: A Structural Classification of Proteins database
-
Conte LL, Ailey B, Hubbard TJP, Brenner SE, Murzin AG, Chothia C. Scop: A Structural Classification of Proteins database. Nucleic Acids Research 2000; 28: 257-259.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 257-259
-
-
Conte, L.L.1
Ailey, B.2
Hubbard, T.J.P.3
Brenner, S.E.4
Murzin, A.G.5
Chothia, C.6
-
4
-
-
0033957841
-
ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
-
Corpet F, Servant F, Gouzy J, and Kahn D. ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. Nucleic Acids Research 2000; 28: 267-269.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 267-269
-
-
Corpet, F.1
Servant, F.2
Gouzy, J.3
Kahn, D.4
-
7
-
-
0033563522
-
Whole genome protein domain analysis using a new method for domain clustering
-
Gouzy J, Corpet F, and Kahn D. Whole genome protein domain analysis using a new method for domain clustering. Computers & Chemistry 1999; 23: 333-340.
-
(1999)
Computers & Chemistry
, vol.23
, pp. 333-340
-
-
Gouzy, J.1
Corpet, F.2
Kahn, D.3
-
8
-
-
0031865006
-
Touring protein fold space with Dali/FSSP
-
Holm L, and Sander C. Touring protein fold space with Dali/FSSP. Nucleic Acids Research 1998a; 26: 316-319.
-
(1998)
Nucleic Acids Research
, vol.26
, pp. 316-319
-
-
Holm, L.1
Sander, C.2
-
9
-
-
0032189646
-
Dictionary of recurrent domains in protein structures
-
Holm L, and Sander C. Dictionary of recurrent domains in protein structures. Proteins 1998b; 33: 88-96.
-
(1998)
Proteins
, vol.33
, pp. 88-96
-
-
Holm, L.1
Sander, C.2
-
10
-
-
0031829372
-
Removing near-neighbor redundancy from large protein sequence collections
-
Holm L, and Sander C. Removing near-neighbor redundancy from large protein sequence collections. Bioinformatics 1998c; 14: 423-429.
-
(1998)
Bioinformatics
, vol.14
, pp. 423-429
-
-
Holm, L.1
Sander, C.2
-
11
-
-
0004180847
-
-
Technical Report (UCSC-CRL-95-7) University of California, Santa Cruz, Computer Engineering
-
Hughey R, and Krogh A. SAM: Sequence alignment and modeling software system. Technical Report (UCSC-CRL-95-7) University of California, Santa Cruz, Computer Engineering, 1995. http://www. cse. ucsc. edu/ research/compbio/sam. html.
-
(1995)
SAM: Sequence Alignment and Modeling Software System
-
-
Hughey, R.1
Krogh, A.2
-
12
-
-
0029887381
-
Hidden Markov models for sequence analysis: Extension and analysis of the basic method
-
Hughey R, and Krogh A. Hidden Markov models for sequence analysis: Extension and analysis of the basic method. CABIOS 1996; 12(2): 95-107.
-
(1996)
CABIOS
, vol.12
, Issue.2
, pp. 95-107
-
-
Hughey, R.1
Krogh, A.2
-
14
-
-
0025345415
-
Intermediates in the folding reactions of small proteins
-
Kim P, and Baldwin R. Intermediates in the folding reactions of small proteins. Annual Rev Biochem 1990; 59: 631-660.
-
(1990)
Annual Rev Biochem
, vol.59
, pp. 631-660
-
-
Kim, P.1
Baldwin, R.2
-
15
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, and Eisenberg D. A combined algorithm for genome-wide prediction of protein function. Nature 1999; 402: 83-86.
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
17
-
-
0033985048
-
The SBASE protein domain library, release 7. 0: A collection of annotated protein sequence segments
-
Murvai J, Vlahovicek K, Barta E, Cataletto B, and Pongor S. The SBASE protein domain library, release 7. 0: A collection of annotated protein sequence segments. Nucleic Acids Research 2000; 28: 260-262.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 260-262
-
-
Murvai, J.1
Vlahovicek, K.2
Barta, E.3
Cataletto, B.4
Pongor, S.5
-
18
-
-
0028961335
-
Scop: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin A, Brenner SE, Hubbard T, Chothia C. Scop: A structural classification of proteins database for the investigation of sequences and structures. / Mol Biol 1995; 247: 536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
19
-
-
0342982546
-
The CATH classification scheme of protein domain structural families
-
Orengo C, Mitchie A, Jones S, Jones D, Swindella M, Thornton J. The CATH classification scheme of protein domain structural families. Protein Data Bank Quarterly Newsletter 1996; 78: 8-9.
-
(1996)
Protein Data Bank Quarterly Newsletter
, vol.78
, pp. 8-9
-
-
Orengo, C.1
Mitchie, A.2
Jones, S.3
Jones, D.4
Swindella, M.5
Thornton, J.6
-
21
-
-
0038438514
-
Impala: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
-
Schaffer AA, Wolf YL, Ponting CP, Koonin EV, Arav-ind L, and Altschul SF. Impala: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics 1999; 15(12): 1000-1011
-
(1999)
Bioinformatics
, vol.15
, Issue.12
, pp. 1000-1011
-
-
Schaffer, A.A.1
Wolf, Y.L.2
Ponting, C.P.3
Koonin, E.V.4
Arav-Ind, L.5
Altschul, S.F.6
-
22
-
-
0033957469
-
SMART: A web-based tool for the study of genetically mobile domains
-
Schultz J, Copley RR, Doerks T, Ponting CP, Bork P. SMART: A web-based tool for the study of genetically mobile domains, Nucleic Acids Research 2000; 28: 231-234.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 231-234
-
-
Schultz, J.1
Copley, R.R.2
Doerks, T.3
Ponting, C.P.4
Bork, P.5
-
23
-
-
0030925920
-
Pfam: A comprehensive database of protein domain families based on seed alignments
-
Sonnhammer EL, Eddy SR, and Durbin R. Pfam: A comprehensive database of protein domain families based on seed alignments. Proteins 1997; 28: 405-420.
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
25
-
-
0027968068
-
ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, and Gibson TJ. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 1994.
-
(1994)
Nucleic Acids Research
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
26
-
-
0034255358
-
DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches
-
Thompson JD, Plewniak F, Thierry JC, and Poch O. DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches. Nucleic Acid Research. 2000; 28(15): 2919-2926.
-
(2000)
Nucleic Acid Research
, vol.28
, Issue.15
, pp. 2919-2926
-
-
Thompson, J.D.1
Plewniak, F.2
Thierry, J.C.3
Poch, O.4
|