-
1
-
-
65649102679
-
Recent developments in parameter estimation and structure identification of biochemical and genomic systems
-
Chou I.-C., Voit E.O. Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Math. Biosci. 2009, 219:57.
-
(2009)
Math. Biosci.
, vol.219
, pp. 57
-
-
Chou, I.-C.1
Voit, E.O.2
-
2
-
-
3142617691
-
Mathematical and computational techniques to deduce complex biochemical reaction mechanisms
-
Crampin E.J., Schnell S., McSharry P.E. Mathematical and computational techniques to deduce complex biochemical reaction mechanisms. Prog. Biophys. Mol. Biol. 2004, 86:77.
-
(2004)
Prog. Biophys. Mol. Biol.
, vol.86
, pp. 77
-
-
Crampin, E.J.1
Schnell, S.2
McSharry, P.E.3
-
3
-
-
33947647274
-
Efficient algorithms for ordinary differential equation model identification of biological systems
-
Gennemark P., Wedelin D. Efficient algorithms for ordinary differential equation model identification of biological systems. IET Syst. Biol. 2007, 1:120.
-
(2007)
IET Syst. Biol.
, vol.1
, pp. 120
-
-
Gennemark, P.1
Wedelin, D.2
-
4
-
-
84888045985
-
-
Biochemical Systems Theory (BST): A review, International Scholarly Research Network (ISRN) - Biomathematics 1-53, Article 897658.
-
E.O. Voit, Biochemical Systems Theory (BST): A review, International Scholarly Research Network (ISRN) - Biomathematics (2013) 1-53, Article 897658.
-
(2013)
-
-
Voit, E.O.1
-
5
-
-
84873360645
-
√n-consistent parameter estimation for systems of ordinary differential equations: bypassing numerical integration via smoothing
-
Gugushvili S., Klaassen C.A.J. √n-consistent parameter estimation for systems of ordinary differential equations: bypassing numerical integration via smoothing. Bernoulli 2012, 18:1061.
-
(2012)
Bernoulli
, vol.18
, pp. 1061
-
-
Gugushvili, S.1
Klaassen, C.A.J.2
-
6
-
-
35748977901
-
Universally sloppy parameter sensitivities in systems biology models
-
Gutenkunst R.N., Waterfall J.J., Casey F.P., Brown K.S., Myers C.R., Sethna J.P. Universally sloppy parameter sensitivities in systems biology models. PLoS Comput. Biol. 2007, 3:1871.
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 1871
-
-
Gutenkunst, R.N.1
Waterfall, J.J.2
Casey, F.P.3
Brown, K.S.4
Myers, C.R.5
Sethna, J.P.6
-
7
-
-
79960127196
-
Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method
-
Jia G., Stephanopoulos G.N., Gunawan R. Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method. Bioinformatics 2011, 27:1964.
-
(2011)
Bioinformatics
, vol.27
, pp. 1964
-
-
Jia, G.1
Stephanopoulos, G.N.2
Gunawan, R.3
-
8
-
-
67650760503
-
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood
-
Raue A., Kreutz C., Maiwald T., Bachmann J., Schilling M., Klingmuller U., Timmer J. Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinformatics 2009, 25:1923.
-
(2009)
Bioinformatics
, vol.25
, pp. 1923
-
-
Raue, A.1
Kreutz, C.2
Maiwald, T.3
Bachmann, J.4
Schilling, M.5
Klingmuller, U.6
Timmer, J.7
-
9
-
-
77954190584
-
Parameter identifiability of power-law biochemical system models
-
Srinath S., Gunawan R. Parameter identifiability of power-law biochemical system models. J. Biotechnol. 2010, 149:132.
-
(2010)
J. Biotechnol.
, vol.149
, pp. 132
-
-
Srinath, S.1
Gunawan, R.2
-
10
-
-
67649663892
-
Identification of neutral sets of biochemical network models from time series data
-
Vilela M., Vinga S., Maia M.A., Voit E.O., Almeida J.S. Identification of neutral sets of biochemical network models from time series data. BMC Syst. Biol. 2009, 3:47.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 47
-
-
Vilela, M.1
Vinga, S.2
Maia, M.A.3
Voit, E.O.4
Almeida, J.S.5
-
11
-
-
84885494479
-
What if the fit is unfit? Criteria for biological systems estimation beyond residual errors
-
J. Wiley and Sons, New York, M. Dehmer, F. Emmert-Streib, A. Salvador (Eds.)
-
Voit E.O. What if the fit is unfit? Criteria for biological systems estimation beyond residual errors. Applied Statistics for Biological Networks 2011, 183-200. J. Wiley and Sons, New York. M. Dehmer, F. Emmert-Streib, A. Salvador (Eds.).
-
(2011)
Applied Statistics for Biological Networks
, pp. 183-200
-
-
Voit, E.O.1
-
12
-
-
0004075481
-
-
Williams and Wilkins, Baltimore, Reprinted as 'Elements of Mathematical Biology', Dover, New York, 1956
-
Lotka A. Elements of Physical Biology 1924, Williams and Wilkins, Baltimore, Reprinted as 'Elements of Mathematical Biology', Dover, New York, 1956.
-
(1924)
Elements of Physical Biology
-
-
Lotka, A.1
-
13
-
-
0002604954
-
Variazioni e fluttuazioni del numero d'individui in specie animali conviventi
-
Volterra V. Variazioni e fluttuazioni del numero d'individui in specie animali conviventi. Mem. R. Accad. dei Lincei 1926, 2:31.
-
(1926)
Mem. R. Accad. dei Lincei
, vol.2
, pp. 31
-
-
Volterra, V.1
-
17
-
-
0029134903
-
Michaelis-Menten mechanism reconsidered: implications of fractal kinetics
-
Savageau M.A. Michaelis-Menten mechanism reconsidered: implications of fractal kinetics. J. Theor. Biol. 1995, 176:115.
-
(1995)
J. Theor. Biol.
, vol.176
, pp. 115
-
-
Savageau, M.A.1
-
19
-
-
0029661277
-
Modeling forest growth I. Canonical approach
-
Voit E.O., Sands P.J. Modeling forest growth I. Canonical approach. Ecol. Model. 1996, 86:51.
-
(1996)
Ecol. Model.
, vol.86
, pp. 51
-
-
Voit, E.O.1
Sands, P.J.2
-
20
-
-
58149268119
-
Modelling metabolic networks using power-laws and S-systems
-
Voit E.O. Modelling metabolic networks using power-laws and S-systems. Essays Biochem. 2008, 45:29.
-
(2008)
Essays Biochem.
, vol.45
, pp. 29
-
-
Voit, E.O.1
-
24
-
-
54949136572
-
System estimation from metabolic time-series data
-
Goel G., Chou I.C., Voit E.O. System estimation from metabolic time-series data. Bioinformatics 2008, 24:2505.
-
(2008)
Bioinformatics
, vol.24
, pp. 2505
-
-
Goel, G.1
Chou, I.C.2
Voit, E.O.3
-
25
-
-
72049107766
-
Estimation of metabolic pathway systems from different data sources
-
Voit E.O., Goel G., Chou I.-C., da Fonseca L. Estimation of metabolic pathway systems from different data sources. IET Syst. Biol. 2009, 3:513.
-
(2009)
IET Syst. Biol.
, vol.3
, pp. 513
-
-
Voit, E.O.1
Goel, G.2
Chou, I.-C.3
da Fonseca, L.4
-
26
-
-
84863525026
-
Estimation of dynamic flux profiles from metabolic time series data
-
Chou I.-C., Voit E.O. Estimation of dynamic flux profiles from metabolic time series data. BMC Syst. Biol. 2012, 6.
-
(2012)
BMC Syst. Biol.
, vol.6
-
-
Chou, I.-C.1
Voit, E.O.2
-
27
-
-
79951601720
-
Complex coordination of multi-scale cellular responses to environmental stress
-
Fonseca L.L., Sánchez C., Santos H., Voit E.O. Complex coordination of multi-scale cellular responses to environmental stress. Mol. BioSyst. 2011, 7:731.
-
(2011)
Mol. BioSyst.
, vol.7
, pp. 731
-
-
Fonseca, L.L.1
Sánchez, C.2
Santos, H.3
Voit, E.O.4
-
28
-
-
33746615693
-
Regulation of glycolysis in Lactococcus lactis: an unfinished systems biological case study
-
Voit E.O., Almeida J.S., Marino S., Lall R., Goel G., Neves A.R., Santos H. Regulation of glycolysis in Lactococcus lactis: an unfinished systems biological case study. IEE Proc. Syst. Biol. 2006, 153:286.
-
(2006)
IEE Proc. Syst. Biol.
, vol.153
, pp. 286
-
-
Voit, E.O.1
Almeida, J.S.2
Marino, S.3
Lall, R.4
Goel, G.5
Neves, A.R.6
Santos, H.7
-
29
-
-
33947732288
-
Reconstructing biochemical pathways from time course data
-
Srividhya J., Crampin E.J., McSharry P.E., Schnell S. Reconstructing biochemical pathways from time course data. Proteomics 2007, 7:828.
-
(2007)
Proteomics
, vol.7
, pp. 828
-
-
Srividhya, J.1
Crampin, E.J.2
McSharry, P.E.3
Schnell, S.4
-
30
-
-
34249859307
-
Roles of hemoglobin allostery in hypoxia-induced metabolic alterations in erythrocytes: simulation and its verification by metabolome analysis
-
Kinoshita A., Tsukada K., Soga T., Hishiki T., Ueno Y., Nakayama Y., Tomita M., Suematsu M. Roles of hemoglobin allostery in hypoxia-induced metabolic alterations in erythrocytes: simulation and its verification by metabolome analysis. J. Biol. Chem. 2007, 282:10731.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 10731
-
-
Kinoshita, A.1
Tsukada, K.2
Soga, T.3
Hishiki, T.4
Ueno, Y.5
Nakayama, Y.6
Tomita, M.7
Suematsu, M.8
-
34
-
-
0001622717
-
Power-law approach to modeling biological systems. III Methods of analysis
-
Voit E.O., Savageau M.A. Power-law approach to modeling biological systems. III Methods of analysis. J. Ferment. Technol. 1982, 60:223.
-
(1982)
J. Ferment. Technol.
, vol.60
, pp. 223
-
-
Voit, E.O.1
Savageau, M.A.2
-
35
-
-
4444351989
-
Decoupling dynamical systems for pathway identification from metabolic profiles
-
Voit E.O., Almeida J. Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinformatics 2004, 20:1670.
-
(2004)
Bioinformatics
, vol.20
, pp. 1670
-
-
Voit, E.O.1
Almeida, J.2
-
36
-
-
0002465693
-
A spline least squares method for numerical parameter estimation in differential equations
-
Varah J.M. A spline least squares method for numerical parameter estimation in differential equations. SIAM J. Sci. Stat. Comput. 1982, 3:28.
-
(1982)
SIAM J. Sci. Stat. Comput.
, vol.3
, pp. 28
-
-
Varah, J.M.1
-
37
-
-
0012750571
-
Application of calculus of matrices to method of least squares; with special references to geodetic calculations
-
Bjerhammar A. Application of calculus of matrices to method of least squares; with special references to geodetic calculations. Trans. Roy. Inst. Tech. Stockholm 1951, 49:1.
-
(1951)
Trans. Roy. Inst. Tech. Stockholm
, vol.49
, pp. 1
-
-
Bjerhammar, A.1
-
38
-
-
0000178613
-
On the reciprocal of the general algebraic matrix
-
Moore E.H. On the reciprocal of the general algebraic matrix. Bull. Am. Math. Soc. 1920, 26:394.
-
(1920)
Bull. Am. Math. Soc.
, vol.26
, pp. 394
-
-
Moore, E.H.1
-
39
-
-
84947145047
-
A generalized inverse for matrices
-
Penrose R. A generalized inverse for matrices. Proc. Cambridge Philos. Soc. 1955, 51:406.
-
(1955)
Proc. Cambridge Philos. Soc.
, vol.51
, pp. 406
-
-
Penrose, R.1
-
43
-
-
34250922831
-
The varimax criterion for analytic rotation in factor analysis
-
Kaiser H.F. The varimax criterion for analytic rotation in factor analysis. Psychometrika 1958, 23:187.
-
(1958)
Psychometrika
, vol.23
, pp. 187
-
-
Kaiser, H.F.1
|