Speciation on a round planet: Phylogeography of the goatfish genus Mulloidichthys

Journal of Biogeography

Volumn 40, Issue 12, 2013, Pages 2373-2384

  Lessios, H A ^a   Robertson, D R ^a  

^a SMITHSONIAN TROPICAL RESEARCH INSTITUTE   (Panama)

Author keywords

ATP synthetase; Control region; Dispersal; Gene flow; Isthmus of Panama; Mitochondrial DNA; Mullidae; Tropical reef fish; Vicariance

Indexed keywords

BIOGEOGRAPHICAL REGION; CONSPECIFIC; CORAL REEF; DISPERSAL; GENE FLOW; JUVENILE; MITOCHONDRIAL DNA; PERCIFORM; PHYLOGEOGRAPHY; SPECIATION (BIOLOGY); TAXONOMY; VICARIANCE;

ASCENSION ISLAND; CLIPPERTON ISLAND; ISTHMUS OF PANAMA; PANAMA [CENTRAL AMERICA];

MULLIDAE; MULLOIDICHTHYS; MULLOIDICHTHYS DENTATUS; MULLOIDICHTHYS FLAVOLINEATUS; MULLOIDICHTHYS MARTINICUS; MULLOIDICHTHYS MIMICUS; MULLOIDICHTHYS VANICOLENSIS;

EID: 84888028562     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/jbi.12176     Document Type: Article

References (69)

1. Ballard, J.W.O. & Whitlock, M.C. (2004) The incomplete natural history of mitochondria. Molecular Ecology, 13, 729-744.
2. Bermingham, E., McCafferty, S.S. & Martin, A.P. (1997) Fish biogeography and molecular clocks: perspectives from the Panamanian Isthmus. Molecular systematics of fishes (ed. by T.D. Kocher and C.A. Stepien ), pp. 113-128. Academic Press Inc., San Diego, CA.
3. Bowen, B.W., Bass, A.L., Rocha, L.A., Grant, W.S. & Robertson, D.R. (2001) Phylogeography of the trumpetfishes (Aulostomus): ring species complex on a global scale. Evolution, 55, 1029-1039.
4. Bowen, B.W., Muss, A., Rocha, L.A. & Grant, W.S. (2006) Shallow mtDNA coalescence in Atlantic pygmy angelfishes (genus Centropyge) indicates a recent invasion from the Indian Ocean. Journal of Heredity, 97, 1-12.
5. Briggs, J.C. (1974) Marine zoogeography. McGraw-Hill, New York.
6. Briggs, J.C. & Bowen, B.W. (2012) A realignment of marine biogeographic provinces with particular reference to fish distributions. Journal of Biogeography, 39, 12-30.
7. Britton, T., Oxelman, B., Vinnersten, A. & Bremer, K. (2002) Phylogenetic dating with confidence intervals using mean path lengths. Molecular Phylogenetics and Evolution, 24, 58-65.
8. Clarke, T.A. (1995) Larvae of nearshore fishes in oceanic waters of the central equatorial Pacific. Pacific Science, 49, 134-142.
9. Coates, A.G. & Obando, J.A. (1996) The geologic evolution of the Central American Isthmus. Evolution and environment in tropical America (ed. by J.B.C. Jackson, A.G. Coates and A. Budd ), pp. 21-56. University of Chicago Press, Chicago.
10. Colborn, J., Crabtree, R.E., Shaklee, J.B., Pfeiler, E. & Bowen, B.W. (2001) The evolutionary enigma of bonefishes (Albula spp.): cryptic species and ancient separations in a globally distributed shorefish. Evolution, 55, 807-820.
11. Collins, L.S. (1996) Environmental changes in Caribbean shallow waters relative to the closing tropical American seaway. Evolution and environment in tropical America (ed. by J.B.C. Jackson, A.F. Budd and A.G. Coates ), pp. 130-167. University of Chicago Press, Chicago.
12. Collins, L.S., Budd, A.F. & Coates, A.G. (1996a) Earliest evolution associated with closure of the tropical American seaway. Proceedings of the National Academy of Sciences USA, 93, 6069-6072.
13. Collins, L.S., Coates, A.G., Berggren, W.A., Aubry, M.-P. & Zhang, J. (1996b) The late Miocene Panama isthmian strait. Geology, 24, 687-690.
14. Cronin, T.M. & Dowsett, H.J. (1996) Biotic and oceanographic response to the Pliocene closing of the Central American Isthmus. Evolution and environment in tropical America (ed. by J.B.C. Jackson, A.F. Budd and A.G. Coates ), pp. 76-104. University of Chicago Press, Chicago.
15. Excoffier, L., Smouse, P.E. & Quattro, J.M. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
16. Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
17. Grigg, R.W. & Hey, R. (1992) Paleoceanography of the tropical eastern Pacific Ocean. Science, 255, 172-178.
18. Hasegawa, M., Kishino, H. & Yano, T. (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22, 160-174.
19. Haug, G.H. & Tiedemann, R. (1998) Effect of the formation of the Isthmus of Panama on Atlantic Ocean thermohaline circulation. Nature, 393, 673-676.
20. Hickerson, M.J., Stahl, E.A. & Lessios, H.A. (2006) Test for simultaneous divergence using approximate Bayesian computation. Evolution, 60, 2435-2453.
21. Higgins, D.G., Thompson, J.D. & Gibson, T.J. (1996) Using CLUSTAL for multiple sequence alignments. Methods in Enzymology, 266, 383-402.
22. Horne, J.B., van Herwerden, L., Choat, J.H. & Robertson, D.R. (2008) High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49, 629-638.
23. Hutson, W.H. (1980) The Agulhas Current during the late Pleistocene: analysis of modern faunal analogs. Science, 207, 64-66.
24. Jensen, J.L., Bohonak, A.J. & Kelley, S.T. (2005) Isolation by distance, web service. BMC Genetics, 6, 13. Version 3.23.
25. Kim, B-J. (2002) Comparative anatomy and phylogeny of the family Mullidae (Teleostei: Perciformes). Memoirs of the Graduate School of Fishery Science, Hokkaido University, 49, 1-74.
26. Knowlton, N. & Weight, L.A. (1998) New dates and new rates for divergence across the Isthmus of Panama. Proceedings of the Royal Society B: Biological Sciences, 265, 2257-2263.
27. Larson, R.L. & Ladd, J.W. (1973) Evidence for the opening of the South Atlantic in the Early Cretaceous. Nature, 246, 209-212.
28. Lee, W.J., Conroy, J., Howell, W.H. & Kocher, T.D. (1995) Structure and evolution of teleost mitochondrial control regions. Journal of Molecular Evolution, 41, 54-66.
29. Lessios, H.A. (2008) The Great American Schism: divergence of marine organisms after the rise of the Central American Isthmus. Annual Review of Ecology, Evolution, and Systematics, 39, 63-91.
30. Lessios, H.A. & Robertson, D.R. (2006) Crossing the impassable: genetic connections in 20 reef fishes across the eastern Pacific barrier. Proceedings of the Royal Society B: Biological Sciences, 273, 2201-2208.
31. Lessios, H.A., Kessing, B.D., Wellington, G.M. & Graybeal, A. (1996) Indo-Pacific echinoids in the tropical eastern Pacific. Coral Reefs, 15, 133-142.
32. Lessios, H.A., Kessing, B.D., Robertson, D.R. & Paulay, G. (1999) Phylogeography of the pantropical sea urchin Eucidaris in relation to land barriers and ocean currents. Evolution, 53, 806-817.
33. Lessios, H.A., Kessing, B.D. & Pearse, J.S. (2001) Population structure and speciation in tropical seas: global phylogeography of the sea urchin Diadema. Evolution, 55, 955-975.
34. Lo-Yat, A., Meekan, M.G., Carleton, J.H. & Galzin, R. (2006) Large-scale dispersal of the larvae of nearshore and pelagic fishes in the tropical oceanic waters of French Polynesia. Marine Ecology Progress Series, 325, 195-203.
35. Mantel, N. (1967) The detection of disease clustering and the generalized regression approach. Cancer Research, 27, 209-220.
36. Marlow, J.R., Lange, C.B., Wefer, G. & Rosell-Mele, A. (2000) Upwelling intensification as part of the Pliocene-Pleistocene climate transition. Science, 290, 2288-2291.
37. McCartney, M.A., Keller, G. & Lessios, H.A. (2000) Dispersal barriers in tropical oceans and speciation of Atlantic and eastern Pacific Echinometra sea urchins. Molecular Ecology, 9, 1391-1400.
38. Meek, S.E. & Hildebrand, S.F. (1923-1928) The marine fishes of Panama. Field Museum of Natural History, Chicago.
39. Montes, C., Cardona, A., McFadden, R., Morón, S.E., Silva, C.A., Restrepo-Moreno, S., Ramírez, D.A., Hoyos, N., Wilson, J., Farris, D., Bayona, G.A., Jaramillo, C.A., Valencia, V., Bryan, J. & Flores, J.A. (2012) Evidence for middle Eocene and younger land emergence in central Panama: implications for Isthmus closure. Geological Society of America Bulletin, 124, 780-799.
40. Munro, J.L. (1976) Aspects of the biology and ecology of Caribbean reef fishes: Mullidae (goat-fishes). Journal of Fish Biology, 9, 79-97.
41. Nylander, J.A.A., Ronquist, F., Huelsenbeck, J.P. & Nieves-Aldrey, J.L. (2004) Bayesian phylogenetic analysis of combined data. Systematic Biology, 53, 47-67.
42. O'Dea, A., Jackson, J.B.C., Fortunato, H., Smith, J.T., D'Croz, L., Johnson, K.G. & Todd, J.A. (2007) Environmental change preceded Caribbean extinction by 2 million years. Proceedings of the National Academy of Sciences USA, 104, 5501-5506.
43. Posada, D. (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256.
44. Pothin, K., Gonzalez-Salas, C., Chabanet, P. & Lecomte-Finiger, R. (2006) Distinction between Mulloidichthys flavolineatus juveniles from Reunion Island and Mauritius Island (south-west Indian Ocean) based on otolith morphometrics. Journal of Fish Biology, 69, 38-53.
45. Randall, J.E. (2005) Reef and shore fishes of the South Pacific. University of Hawai'i Press, Honolulu.
46. Reece, J.S., Bowen, B.W., Smith, D.G. & Larson, A. (2011) Comparative phylogeography of four Indo-Pacific moray eel species (Muraenidae) reveals comparable ocean-wide genetic connectivity despite five-fold differences in available adult habitat. Marine Ecology Progress Series, 437, 269-277.
47. Robertson, D.R., Grove, J.S. & McCosker, J.E. (2004) Tropical transpacific shore fishes. Pacific Science, 58, 507-565.
48. Rocha, L.A. & Bowen, B.W. (2008) Speciation in coral-reef fishes. Journal of Fish Biology, 72, 1101-1121.
49. Rocha, L.A., Bass, A.L., Robertson, D.R. & Bowen, B.W. (2002) Adult habitat preferences, larval dispersal, and the comparative phylogeography of three Atlantic surgeonfishes (Teleostei: Acanthuridae). Molecular Ecology, 11, 243-252.
50. Rocha, L.A., Robertson, D.R., Rocha, C.R., Van Tassell, J.L., Craig, M.T. & Bowen, B.W. (2005) Recent invasion of the tropical Atlantic by an Indo-Pacific coral reef fish. Molecular Ecology, 14, 3921-3928.
51. Rögl, F. & Steininger, F.F. (1984) Neogene Paratethys, Mediterranean and Indo-Pacific seaways. Implications for the paleobiogeography of marine and terrestrial biotas. Fossils and climate (ed. by P. Brenchley ), pp. 171-200. Wiley, New York.
52. Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
53. Shaklee, J.B., Tamaru, C.S. & Waples, R.S. (1982) Speciation and evolution of marine fishes studied by the electrophoretic analysis of proteins. Pacific Science, 36, 141-157.
54. Shannon, L.V. (1985) The Benguela ecosystem. Part I. Evolution of the Benguela physical features and processes. Oceanography and Marine Biology: an Annual Review, 23, 105-182.
55. Shannon, L.V., Agenbag, J.J., Walker, N.D. & Lutjeharms, J.R.E. (1990) A major perturbation in the Agulhas retroflection area in 1986. Deep-Sea Research, 37, 493-512.
56. Shimodaira, H. & Hasegawa, M. (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116.
57. Stepien, C.A., Randall, J.E. & Rosenblatt, R.H. (1994) Genetic and morphological divergence of a circumtropical complex of goatfishes: Mulloidichthys vanicolensis, M. dentatus, and M. martinicus. Pacific Science, 48, 44-56.
58. Swofford, D.L. (2002) PAUP. Phylogenetic analyses using parsimony (and other methods), version 4. Sinauer Associates, Sunderland, MA.
59. Tamura, K. & Nei, M. (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
60. Tamura, K., Nei, M. & Kumar, S. (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences USA, 101, 11030-11035.
61. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
62. Tavare, S. (1986) Some probabilistic and statistical problems in the analysis of DNA sequences. Lectures on mathematics in the life sciences (ed. by R.M. Miura ), pp. 57-86. American Mathematical Society, Providence, RI.
63. Thomson, D.A., Findley, L.T. & Kerstitch, A.N. (1979) Reef fishes of the Sea of Cortez. The University of Arizona Press, Tucson, AZ.
64. Uiblein, F. (2011) Taxonomic review of Western Indian Ocean goatfishes of the genus Mulloidichthys (Family Mullidae), with description of a new species and remarks on colour and body form variation in Indo-West Pacific species. Smithiana Bulletin, 13, 51-73.
65. Vawter, A.T., Rosenblatt, R. & Gorman, G.C. (1980) Genetic divergence among fishes of the eastern Pacific and the Caribbean: support for the molecular clock. Evolution, 34, 705-711.
66. Wright, S. (1951) The genetic structure of populations. Annals of Eugenics, 15, 323-354.
67. Xia, X.H., Xie, Z., Salemi, M., Chen, L. & Wang, Y. (2003) An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26, 1-7.
68. Zelwer, M., Daubin, V. & Vincent, D. (2004) Detecting phylogenetic incongruence using BIONJ: an improvement of the ILD test. Molecular Phylogenetics and Evolution, 33, 687-693.
69. Zischler, H., Geisert, H., von Haeseler, A. & Pääbo, S. (1995) A nuclear 'fossil' of the mitochondrial D-loop and the origin of modern humans. Nature, 378, 489-492.