-
1
-
-
77950418344
-
Research on plant abiotic stress responses in the postgenome era: Past, present and future
-
Hirayama, T.; Shinozaki, K. Research on plant abiotic stress responses in the postgenome era: Past, present and future. Plant J. 2010, 61, 1041-1052.
-
(2010)
Plant J
, vol.61
, pp. 1041-1052
-
-
Hirayama, T.1
Shinozaki, K.2
-
2
-
-
37749033251
-
Riboregulators in plant development
-
Laporte, P.; Merchan, F.; Amor, B. B.; Wirth, S.; Crespi, M. Riboregulators in plant development. Biochem. Soc. Trans. 2007, 35, 1638-1642.
-
(2007)
Biochem. Soc. Trans
, vol.35
, pp. 1638-1642
-
-
Laporte, P.1
Merchan, F.2
Amor, B.B.3
Wirth, S.4
Crespi, M.5
-
3
-
-
46149097613
-
Diamonds in the rough: MRNA-like non-coding RNAs
-
Rymarquis, L. A.; Kastenmayer, J. P.; Huttenhofer, A. G.; Green, P. J. Diamonds in the rough: mRNA-like non-coding RNAs. Trends Plant Sci. 2008, 13, 329-334.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 329-334
-
-
Rymarquis, L.A.1
Kastenmayer, J.P.2
Huttenhofer, A.G.3
Green, P.J.4
-
4
-
-
49449094591
-
Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array
-
Matsui, A.; Ishida, J.; Morosawa, T.; Mochizuki, Y.; Kaminuma, E.; Endo, T. A.; Okamoto, M.; Nambara, E.; Nakajima, M.; Kawashima, M.; et al. Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array. Plant Cell Physiol. 2008, 49, 1135-1149.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1135-1149
-
-
Matsui, A.1
Ishida, J.2
Morosawa, T.3
Mochizuki, Y.4
Kaminuma, E.5
Endo, T.A.6
Okamoto, M.7
Nambara, E.8
Nakajima, M.9
Kawashima, M.10
-
5
-
-
39749108698
-
Abiotic stress response in plants: When post-transcriptional and post-translational regulations control transcription
-
Mazzucotelli, E.; Mastrangelo, A. M.; Crosatti, C.; Guerra, D.; Stanca, A. M.; Cattivelli, L. Abiotic stress response in plants: When post-transcriptional and post-translational regulations control transcription. Plant Sci. 2008, 174, 420-431.
-
(2008)
Plant Sci
, vol.174
, pp. 420-431
-
-
Mazzucotelli, E.1
Mastrangelo, A.M.2
Crosatti, C.3
Guerra, D.4
Stanca, A.M.5
Cattivelli, L.6
-
6
-
-
84856594225
-
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
-
Khraiwesh, B.; Zhu, J. K.; Zhu, J. Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim. Biophys. Acta 2012, 1819, 137-148.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 137-148
-
-
Khraiwesh, B.1
Zhu, J.K.2
Zhu, J.3
-
7
-
-
84872458386
-
microRNAs play critical roles during plant development and in response to abiotic stresses
-
De Lima, J. C.; Loss-Morais, G.; Margis, R. microRNAs play critical roles during plant development and in response to abiotic stresses. Genet. Mol. Biol. 2012, 35, 1069-1077.
-
(2012)
Genet. Mol. Biol
, vol.35
, pp. 1069-1077
-
-
De Lima, J.C.1
Loss-Morais, G.2
Margis, R.3
-
8
-
-
4043074968
-
Novel and stress-regulated MicroRNAs and other small RNA from Arabidopsis
-
Sunkar, R.; Zhu, J. K. Novel and stress-regulated MicroRNAs and other small RNA from Arabidopsis. Plant Cell 2004, 16, 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
9
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet, O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136, 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
10
-
-
0028370581
-
A novel cis-acting element in an Arabidopsis gene is involved in responsiveness
-
Yamaguchi-Shinozaki, K.; Shinozaki, K. A novel cis-acting element in an Arabidopsis gene is involved in responsiveness. Plant Cell 1994, 6, 251-264.
-
(1994)
Plant Cell
, vol.6
, pp. 251-264
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
11
-
-
0025098288
-
Nuclear proteins bind conserved elements in the abscisic acid-responsive promoter of a rice rab gene
-
Mundy, J.; Yamaguchi-Shinozaki, K.; Chua, N. H. Nuclear proteins bind conserved elements in the abscisic acid-responsive promoter of a rice rab gene. Proc. Natl. Acad. Sci. USA 1990, 87, 1406-1410.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 1406-1410
-
-
Mundy, J.1
Yamaguchi-Shinozaki, K.2
Chua, N.H.3
-
12
-
-
77955870461
-
The Mg-chelatase H subunit of Arabidopsis antagonizes a group of transcription repressors to relieve ABA-responsive genes of inhibition
-
Shang, Y.; Yan, L.; Liu, Z. Q.; Zheng, C.; Chao, M.; Xin, Q.; Wu, F. Q.; Wang, X. F.; Du, S. Y.; Jiang, T.; et al. The Mg-chelatase H subunit of Arabidopsis antagonizes a group of transcription repressors to relieve ABA-responsive genes of inhibition. Plant Cell 2010, 22, 1909-1935.
-
(2010)
Plant Cell
, vol.22
, pp. 1909-1935
-
-
Shang, Y.1
Yan, L.2
Liu, Z.Q.3
Zheng, C.4
Chao, M.5
Xin, Q.6
Wu, F.Q.7
Wang, X.F.8
Du, S.Y.9
Jiang, T.10
-
13
-
-
55049118172
-
Identification of cold-inducible microRNAs in plants by transcriptome analysis
-
Zhou, X.; Wang, G.; Sutoh, K.; Zhu, J. K.; Zhang, W. Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim. Biophys. Acta 2008, 1779, 780-788.
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 780-788
-
-
Zhou, X.1
Wang, G.2
Sutoh, K.3
Zhu, J.K.4
Zhang, W.5
-
14
-
-
42449109504
-
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
-
Liu, H. H.; Tian, X.; Li, Y. U.; Wu, C. A.; Zheng, C. C. Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 2008, 14, 836-843.
-
(2008)
RNA
, vol.14
, pp. 836-843
-
-
Liu, H.H.1
Tian, X.2
Li, Y.U.3
Wu, C.A.4
Zheng, C.C.5
-
15
-
-
77958031243
-
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
-
Zhou, L.; Liu, Y.; Liu, Z.; Kong, D.; Duan, M.; Luo, L. Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J. Exp. Bot. 2010, 61, 4157-4168.
-
(2010)
J. Exp. Bot
, vol.61
, pp. 4157-4168
-
-
Zhou, L.1
Liu, Y.2
Liu, Z.3
Kong, D.4
Duan, M.5
Luo, L.6
-
16
-
-
27844526222
-
A miRNA involved in phosphate starvation response in Arabidopsis
-
Fuji, H.; Chiou, T. J.; Lin, S. I.; Aung, K.; Zhu, J. K. A miRNA involved in phosphate starvation response in Arabidopsis. Curr. Biol. 2005, 15, 2038-2043.
-
(2005)
Curr. Biol
, vol.15
, pp. 2038-2043
-
-
Fuji, H.1
Chiou, T.J.2
Lin, S.I.3
Aung, K.4
Zhu, J.K.5
-
17
-
-
33747505089
-
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
-
Sunkar, R.; Kapoor, A.; Zhu, J. K. Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 2006, 18, 2051-2065.
-
(2006)
Plant Cell
, vol.18
, pp. 2051-2065
-
-
Sunkar, R.1
Kapoor, A.2
Zhu, J.K.3
-
18
-
-
34447528701
-
Regulation of copper homeostasis by micro-RNA in Arabidopsis
-
Yamasaki, H.; Abdel-Ghany, S. E.; Cohu, C. M.; Kobayashi, Y.; Shikanai, T.; Pilon, M. Regulation of copper homeostasis by micro-RNA in Arabidopsis. J. Biol. Chem. 2007, 282, 16369-16378.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 16369-16378
-
-
Yamasaki, H.1
Abdel-Ghany, S.E.2
Cohu, C.M.3
Kobayashi, Y.4
Shikanai, T.5
Pilon, M.6
-
19
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen, P.; Sakvarelidze-Achard, L.; Bruun-Rasmussen, M.; Dunoyer, P.; Yamamoto, Y. Y.; Sieburth, L.; Voinnet, O. Widespread translational inhibition by plant miRNAs and siRNAs. Science 2008, 320, 1185-1190.
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
20
-
-
84863298341
-
Transcriptional regulation of Arabidopsis miR168a and ARGONAUTE1 homeostasis in abscisic acid and abiotic stress responses
-
Li, W.; Cui, X.; Meng, Z.; Huang, X.; Xie, Q.; Wu, H.; Jin, H.; Zhang, D.; Liang, W. Transcriptional regulation of Arabidopsis miR168a and ARGONAUTE1 homeostasis in abscisic acid and abiotic stress responses. Plant Physiol. 2013, 158, 1279-1292.
-
(2013)
Plant Physiol
, vol.158
, pp. 1279-1292
-
-
Li, W.1
Cui, X.2
Meng, Z.3
Huang, X.4
Xie, Q.5
Wu, H.6
Jin, H.7
Zhang, D.8
Liang, W.9
-
21
-
-
34748913056
-
Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages
-
Liu, P. P.; Montgomery, T. A.; Fahlgren, N.; Kasschau, K. D.; Nonogaki, H.; Carrington, J. C. Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J. 2007, 52, 133-146.
-
(2007)
Plant J
, vol.52
, pp. 133-146
-
-
Liu, P.P.1
Montgomery, T.A.2
Fahlgren, N.3
Kasschau, K.D.4
Nonogaki, H.5
Carrington, J.C.6
-
22
-
-
82755162935
-
Apoplastic reactive oxygen species transiently decrease auxin signaling and cause stress-induced morphogenic response in Arabidopsis
-
Blomster, T.; Salojarvi, J.; Sipari, N.; Brosche, M.; Ahlfors, R.; Keinanen, M.; Overmyer, K.; Kangasjarvi, J. Apoplastic reactive oxygen species transiently decrease auxin signaling and cause stress-induced morphogenic response in Arabidopsis. Plant Physiol. 2011, 157, 1866-1883.
-
(2011)
Plant Physiol
, vol.157
, pp. 1866-1883
-
-
Blomster, T.1
Salojarvi, J.2
Sipari, N.3
Brosche, M.4
Ahlfors, R.5
Keinanen, M.6
Overmyer, K.7
Kangasjarvi, J.8
-
23
-
-
33751516753
-
Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction
-
Wu, M. F.; Tian, Q.; Reed, J. W. Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development 2006, 133, 4211-4218.
-
(2006)
Development
, vol.133
, pp. 4211-4218
-
-
Wu, M.F.1
Tian, Q.2
Reed, J.W.3
-
24
-
-
77953193344
-
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
Marin, E.; Jouannet, V.; Herz, A.; Lokerse, A. S.; Weijers, D.; Vaucheret, H.; Nussaume, L.; Crespi, M. D.; Maizel, A. miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 2010, 22, 1104-1117.
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
Nussaume, L.7
Crespi, M.D.8
Maizel, A.9
-
25
-
-
77956647918
-
Auxin signaling participates in the adaptative response against oxidative stress and salinity by interacting with redox metabolism in Arabidopsis
-
Iglesias, M. J.; Terrile, M. C.; Bartoli, C. G.; D'Ippolito, S.; Casalongue, C. A. Auxin signaling participates in the adaptative response against oxidative stress and salinity by interacting with redox metabolism in Arabidopsis. Plant Mol. Biol. 2010, 74, 215-222.
-
(2010)
Plant Mol. Biol
, vol.74
, pp. 215-222
-
-
Iglesias, M.J.1
Terrile, M.C.2
Bartoli, C.G.3
D'Ippolito, S.4
Casalongue, C.A.5
-
26
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades, M. W.; Bartel, D. P. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell. 2004, 14, 787-799.
-
(2004)
Mol. Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
27
-
-
33745963372
-
pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene
-
Aung, K.; Lin, S. I.; Wu, C. C.; Huang, Y. T.; Su, C. L.; Chiou, T. J. pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol. 2006, 141, 1000-1011.
-
(2006)
Plant Physiol
, vol.141
, pp. 1000-1011
-
-
Aung, K.1
Lin, S.I.2
Wu, C.C.3
Huang, Y.T.4
Su, C.L.5
Chiou, T.J.6
-
28
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla, J. M.; Valli, A.; Todesco, M.; Mateos, I.; Puga, M. I.; Rubio-Somoza, I.; Leyva, A.; Weigel, D.; Garcia, J. A.; Paz-Ares, J. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat. Genet. 2007, 39, 1033-1037.
-
(2007)
Nat. Genet
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
Leyva, A.7
Weigel, D.8
Garcia, J.A.9
Paz-Ares, J.10
-
29
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
Mallory, A. C.; Vaucheret, H. Functions of microRNAs and related small RNAs in plants. Nat. Genet. 2006, 38, S31-S36.
-
(2006)
Nat. Genet
, vol.38
-
-
Mallory, A.C.1
Vaucheret, H.2
-
30
-
-
79953746026
-
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
-
Ito, H.; Gaubert, H.; Bucher, E.; Mirouze, M.; Vaillant, I.; Paszkowski, J. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature 2011, 472, 115-119.
-
(2011)
Nature
, vol.472
, pp. 115-119
-
-
Ito, H.1
Gaubert, H.2
Bucher, E.3
Mirouze, M.4
Vaillant, I.5
Paszkowski, J.6
-
31
-
-
77949864217
-
Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins
-
Boyko, A.; Blevins, T.; Yao, Y.; Golubov, A.; Bilichak, A.; Ilnytskyy, Y.; Hollunder, J.; Meins, F., Jr.; Kovalchuk, I. Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins. PLoS One 2010, 5, e9514.
-
(2010)
PLoS One
, vol.5
-
-
Boyko, A.1
Blevins, T.2
Yao, Y.3
Golubov, A.4
Bilichak, A.5
Ilnytskyy, Y.6
Hollunder, J.7
Meins Jr., F.8
Kovalchuk, I.9
-
32
-
-
33745804463
-
MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis
-
Ronemus, M.; Vaughn, M. W.; Martienssen, R. A. MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell 2006, 18, 1559-1574.
-
(2006)
Plant Cell
, vol.18
, pp. 1559-1574
-
-
Ronemus, M.1
Vaughn, M.W.2
Martienssen, R.A.3
-
33
-
-
17444430392
-
MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen, E.; Xie, Z.; Gustafson, A. M.; Carrington, J. C. MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121, 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
34
-
-
61449126060
-
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
-
Ben Amor, B.; Wirth, S.; Merchan, F.; Laporte, P.; d'Aubenton-Carafa, Y.; Hirsch, J.; Maizel, A.; Mallory, A.; Lucas, A.; Deragon J. M.; et al. Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res. 2009, 19, 57-69.
-
(2009)
Genome Res
, vol.19
, pp. 57-69
-
-
Ben Amor, B.1
Wirth, S.2
Merchan, F.3
Laporte, P.4
D'Aubenton-Carafa, Y.5
Hirsch, J.6
Maizel, A.7
Mallory, A.8
Lucas, A.9
Deragon, J.M.10
-
35
-
-
40249114929
-
Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells
-
Yang, J. H.; Seo, H. H.; Han, S. J.; Yoon, E. K.; Yang, M. S.; Lee, W. S. Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells. Nucleic Acids Res. 2008, 36, 1220-1226.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1220-1226
-
-
Yang, J.H.1
Seo, H.H.2
Han, S.J.3
Yoon, E.K.4
Yang, M.S.5
Lee, W.S.6
-
36
-
-
14644430438
-
Drought and salt tolerance in plants
-
Bartels, D.; Sunkar, R. Drought and salt tolerance in plants. Crit. Rev. Plant. Sci. 2005, 24, 23-58.
-
(2005)
Crit. Rev. Plant. Sci
, vol.24
, pp. 23-58
-
-
Bartels, D.1
Sunkar, R.2
-
37
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
Borsani, O.; Zhu, J.; Verslues, P. E.; Sunkar, R.; Zhu, J. K. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 2005, 123, 1279-1291.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
38
-
-
84878328255
-
Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues
-
Zhang, X.; Lii, Y.; Wu, Z.; Polishko, A.; Zhang, H.; Chinnusamy, V.; Lonardi, S.; Zhu, J. K.; Liu, R.; Jin, H. Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues. Mol. Plant 2013, 6, 704-715.
-
(2013)
Mol. Plant
, vol.6
, pp. 704-715
-
-
Zhang, X.1
Lii, Y.2
Wu, Z.3
Polishko, A.4
Zhang, H.5
Chinnusamy, V.6
Lonardi, S.7
Zhu, J.K.8
Liu, R.9
Jin, H.10
-
39
-
-
34447132252
-
Distinct expression patterns of natural antisense transcripts in Arabidopsis
-
Henz, S. R., Cumbie, J. S.; Kasschau, K. D.; Lohmann, J. U.; Carrington, J. C.; Weigel, D.; Schmid, M. Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiol. 2007, 144, 1247-1255.
-
(2007)
Plant Physiol
, vol.144
, pp. 1247-1255
-
-
Henz, S.R.1
Cumbie, J.S.2
Kasschau, K.D.3
Lohmann, J.U.4
Carrington, J.C.5
Weigel, D.6
Schmid, M.7
-
40
-
-
84875754164
-
Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis thaliana
-
Zhan, S.; Lukens, L. Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis thaliana. Plant Physiol. 2013, 161, 2171-2180.
-
(2013)
Plant Physiol
, vol.161
, pp. 2171-2180
-
-
Zhan, S.1
Lukens, L.2
-
41
-
-
0242300620
-
Empirical analysis of transcriptional activity in the Arabidopsis genome
-
Yamada, K.; Lim, J.; Dale, J. M.; Chen, H.; Shinn, P.; Palm, C. J.; Southwick, A. M.; Wu, H. C.; Kim, C.; Nguyen, M.; et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 2003, 302, 842-846.
-
(2003)
Science
, vol.302
, pp. 842-846
-
-
Yamada, K.1
Lim, J.2
Dale, J.M.3
Chen, H.4
Shinn, P.5
Palm, C.J.6
Southwick, A.M.7
Wu, H.C.8
Kim, C.9
Nguyen, M.10
-
42
-
-
29444438757
-
Genome-wide transcription analyses in rice using tiling microarrays
-
Li, L.; Wang, X. F.; Stolc, V.; Li, X. Y.; Zhang, D. F.; Su, N.; Tongprasit, W.; Li, S. G.; Cheng, Z. K.; Wang, J.; et al. Genome-wide transcription analyses in rice using tiling microarrays. Nat. Genet. 2006, 38, 124-129.
-
(2006)
Nat. Genet
, vol.38
, pp. 124-129
-
-
Li, L.1
Wang, X.F.2
Stolc, V.3
Li, X.Y.4
Zhang, D.F.5
Su, N.6
Tongprasit, W.7
Li, S.G.8
Cheng, Z.K.9
Wang, J.10
-
43
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister, R.; O'Malley, R. C.; Tonti-Filippini, J.; Gregory, B. D.; Berry, C. C.; Millar, A. H.; Ecker, J. R. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008, 133, 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
44
-
-
48249130774
-
At-TAX: A whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
-
Laubinger, S.; Zeller, G.; Henz, S. R.; Sachsenberg, T.; Widmer, C. K.; Naouar, N.; Vuylsteke, M.; Scholkopf, B.; Ratsch, G.; Weigel, D. At-TAX: A whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biol. 2008, 9, R112.
-
(2008)
Genome Biol
, vol.9
-
-
Laubinger, S.1
Zeller, G.2
Henz, S.R.3
Sachsenberg, T.4
Widmer, C.K.5
Naouar, N.6
Vuylsteke, M.7
Scholkopf, B.8
Ratsch, G.9
Weigel, D.10
-
45
-
-
62349089764
-
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
-
Hazen, S. P.; Naef, F.; Quisel, T.; Gendron, J. M.; Chen, H.; Ecker, J. R.; Borevitz, J. O.; Kay, S. A. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol. 2009, 10, R17.
-
(2009)
Genome Biol
, vol.10
-
-
Hazen, S.P.1
Naef, F.2
Quisel, T.3
Gendron, J.M.4
Chen, H.5
Ecker, J.R.6
Borevitz, J.O.7
Kay, S.A.8
-
46
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
Filichkin, S. A.; Priest, H. D.; Givan, S. A.; Shen, R.; Bryant, D. W.; Fox, S. E.; Wong, W. K.; Mockler, T. C. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res. 2010, 20, 45-58.
-
(2010)
Genome Res
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
Priest, H.D.2
Givan, S.A.3
Shen, R.4
Bryant, D.W.5
Fox, S.E.6
Wong, W.K.7
Mockler, T.C.8
-
47
-
-
72049133207
-
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
-
Swiezewski, S.; Liu, F.; Magusin, A.; Dean, C. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 2009, 462, 799-802.
-
(2009)
Nature
, vol.462
, pp. 799-802
-
-
Swiezewski, S.1
Liu, F.2
Magusin, A.3
Dean, C.4
-
48
-
-
84871967979
-
Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production
-
Luo, C.; Sidote, D. J.; Zhang, Y.; Kerstetter, R. A.; Michael, T. P.; Lam, E. Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production. Plant J. 2013, 73, 77-90.
-
(2013)
Plant J
, vol.73
, pp. 77-90
-
-
Luo, C.1
Sidote, D.J.2
Zhang, Y.3
Kerstetter, R.A.4
Michael, T.P.5
Lam, E.6
-
49
-
-
84864455779
-
Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis
-
Rajeswaran, R.; Aregger, M.; Zvereva, A. S.; Borah, B. K.; Gubaeva, E. G.; Pooggin, M. M. Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis. Nucleic Acids Res. 2012, 40, 6241-6254.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6241-6254
-
-
Rajeswaran, R.1
Aregger, M.2
Zvereva, A.S.3
Borah, B.K.4
Gubaeva, E.G.5
Pooggin, M.M.6
-
50
-
-
4944241489
-
Intron retention is a major phenomenon in alternative splicing in Arabidopsis
-
Ner-Gaon, H.; Halachmi, R.; Savaldi-Goldstein, S.; Rubin, E.; Ophir, R.; Fluhr, R. Intron retention is a major phenomenon in alternative splicing in Arabidopsis. Plant J. 2004, 39, 877-885.
-
(2004)
Plant J
, vol.39
, pp. 877-885
-
-
Ner-Gaon, H.1
Halachmi, R.2
Savaldi-Goldstein, S.3
Rubin, E.4
Ophir, R.5
Fluhr, R.6
-
51
-
-
84873479857
-
Small open reading frames associated with morphogenesis are hidden in plant genomes
-
Hanada, K.; Higuchi-Takeuchi, M.; Okamoto, M.; Yoshizumi, T.; Shimizu, M.; Nakaminami, K.; Nishi, R.; Ohashi, C.; Iida, K.; Tanaka, M.; et al. Small open reading frames associated with morphogenesis are hidden in plant genomes. Proc. Natl. Acad. Sci. USA 2013, 110, 2395-2400.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 2395-2400
-
-
Hanada, K.1
Higuchi-Takeuchi, M.2
Okamoto, M.3
Yoshizumi, T.4
Shimizu, M.5
Nakaminami, K.6
Nishi, R.7
Ohashi, C.8
Iida, K.9
Tanaka, M.10
-
52
-
-
84871723378
-
Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis
-
Moghe, G. D.; Lehti-Shiu, M. D.; Seddon, A. E.; Yin, S.; Chen, Y.; Juntawong, P.; Brandizzi, F.; Bailey-Serres, J.; Shiu, S. H. Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis. Plant Physiol. 2013, 161, 1210-1224.
-
(2013)
Plant Physiol
, vol.161
, pp. 1210-1224
-
-
Moghe, G.D.1
Lehti-Shiu, M.D.2
Seddon, A.E.3
Yin, S.4
Chen, Y.5
Juntawong, P.6
Brandizzi, F.7
Bailey-Serres, J.8
Shiu, S.H.9
-
53
-
-
84860723671
-
A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis
-
Wu, J.; Okada, T.; Fukushima, T.; Tsudzuki, T.; Sugiura, M.; Yukawa, Y. A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis. RNA Biol. 2012, 9, 302-313.
-
(2012)
RNA Biol
, vol.9
, pp. 302-313
-
-
Wu, J.1
Okada, T.2
Fukushima, T.3
Tsudzuki, T.4
Sugiura, M.5
Yukawa, Y.6
-
54
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
Kapranov, P.; Willingham, A. T.; Gingeras, T. R. Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet. 2007, 8, 413-423.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
55
-
-
0037117416
-
A branched pathway for transgene-induced RNA silencing in plants
-
Beclin, C.; Boutet, S.; Waterhouse, P.; Vaucheret, H. A branched pathway for transgene-induced RNA silencing in plants. Curr. Biol. 2002, 12, 684-688.
-
(2002)
Curr. Biol
, vol.12
, pp. 684-688
-
-
Beclin, C.1
Boutet, S.2
Waterhouse, P.3
Vaucheret, H.4
-
56
-
-
24944491201
-
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
-
Yoshikawa, M.; Peragine, A.; Park, M. Y.; Poethig, R. S. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev. 2005, 19, 2164-2175.
-
(2005)
Genes Dev
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, R.S.4
-
57
-
-
78049445573
-
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis
-
Zheng, Q.; Ryvkin, P.; Li, F.; Dragomir, I.; Valladares, O.; Yang, J.; Cao, K.; Wang, L. S.; Gregory, B. D. Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. PLoS Genet. 2010, 6, e1001141.
-
(2010)
PLoS Genet
, vol.6
-
-
Zheng, Q.1
Ryvkin, P.2
Li, F.3
Dragomir, I.4
Valladares, O.5
Yang, J.6
Cao, K.7
Wang, L.S.8
Gregory, B.D.9
-
58
-
-
44449142226
-
A link between RNA metabolism and silencing affecting Arabidopsis development
-
Gregory, B. D.; O'Malley, R. C.; Lister, R.; Urich, M. A.; Tonti-Filippini, J.; Chen, H.; Millar, A. H.; Ecker, J. R. A link between RNA metabolism and silencing affecting Arabidopsis development. Dev. Cell 2008, 14, 854-866.
-
(2008)
Dev. Cell
, vol.14
, pp. 854-866
-
-
Gregory, B.D.1
O'Malley, R.C.2
Lister, R.3
Urich, M.A.4
Tonti-Filippini, J.5
Chen, H.6
Millar, A.H.7
Ecker, J.R.8
-
59
-
-
8344240473
-
A link between mRNA turnover and RNA interference in Arabidopsis
-
Gazzani, S.; Lawrenson, T.; Woodward, C.; Headon, D.; Sablowski, R. A link between mRNA turnover and RNA interference in Arabidopsis. Science 2004, 306, 1046-1048.
-
(2004)
Science
, vol.306
, pp. 1046-1048
-
-
Gazzani, S.1
Lawrenson, T.2
Woodward, C.3
Headon, D.4
Sablowski, R.5
-
60
-
-
28444464041
-
DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal
-
Dunoyer, P.; Himber, C.; Voinnet, O. DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal. Nat. Genet. 2005, 37, 1356-1360.
-
(2005)
Nat. Genet
, vol.37
, pp. 1356-1360
-
-
Dunoyer, P.1
Himber, C.2
Voinnet, O.3
-
61
-
-
29144528351
-
Expression of Arabidopsis miRNA genes
-
Xie, Z.; Allen, E.; Fahlgren, N.; Calamar, A.; Givan, S. A.; Carrington, J. C. Expression of Arabidopsis miRNA genes. Plant Physiol. 2005, 138, 2145-2154.
-
(2005)
Plant Physiol
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
Carrington, J.C.6
-
62
-
-
84855404214
-
RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS
-
Jauvion, V.; Rivard, M.; Bouteiller, N.; Elmayan, T.; Vaucheret, H. RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS. PLoS One 2012, 7, e29785.
-
(2012)
PLoS One
, vol.7
-
-
Jauvion, V.1
Rivard, M.2
Bouteiller, N.3
Elmayan, T.4
Vaucheret, H.5
-
63
-
-
0041565109
-
A gene encoding an RNase D exonuclease-like protein is required for post-transcriptional silencing in Arabidopsis
-
Glazov, E.; Phillips, K.; Budziszewski, G. J.; Schob, H.; Meins, F., Jr.; Levin, J. Z. A gene encoding an RNase D exonuclease-like protein is required for post-transcriptional silencing in Arabidopsis. Plant J. 2003, 35, 342-349.
-
(2003)
Plant J
, vol.35
, pp. 342-349
-
-
Glazov, E.1
Phillips, K.2
Budziszewski, G.J.3
Schob, H.4
Meins Jr., F.5
Levin, J.Z.6
-
64
-
-
14844295120
-
RNA polymerase IV directs silencing of endogenous DNA
-
Herr, A. J.; Jensen, M. B.; Dalmay, T.; Baulcombe, D. C. RNA polymerase IV directs silencing of endogenous DNA. Science 2005, 308, 118-120.
-
(2005)
Science
, vol.308
, pp. 118-120
-
-
Herr, A.J.1
Jensen, M.B.2
Dalmay, T.3
Baulcombe, D.C.4
-
65
-
-
0035901497
-
SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis
-
Dalmay, T.; Horsefield, R.; Braunstein, T. H.; Baulcombe, D. C. SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO J. 2001, 20, 2069-2078.
-
(2001)
EMBO J
, vol.20
, pp. 2069-2078
-
-
Dalmay, T.1
Horsefield, R.2
Braunstein, T.H.3
Baulcombe, D.C.4
-
66
-
-
74849099777
-
Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing
-
Liu, F.; Marquardt, S.; Lister, C.; Swiezewski, S.; Dean, C. Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing. Science 2010, 327, 94-97.
-
(2010)
Science
, vol.327
, pp. 94-97
-
-
Liu, F.1
Marquardt, S.2
Lister, C.3
Swiezewski, S.4
Dean, C.5
-
67
-
-
79961172475
-
A Polycomb-based switch underlying quantitative epigenetic memory
-
Angel, A.; Song, J.; Dean, C.; Howard, M. A Polycomb-based switch underlying quantitative epigenetic memory. Nature 2011, 476, 105-108.
-
(2011)
Nature
, vol.476
, pp. 105-108
-
-
Angel, A.1
Song, J.2
Dean, C.3
Howard, M.4
-
68
-
-
58149217038
-
A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization
-
De Lucia, F.; Crevillen, P.; Jones, A. M.; Greb, T.; Dean, C. A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization. Proc. Natl. Acad. Sci. USA 2008, 105, 16831-16836.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 16831-16836
-
-
De Lucia, F.1
Crevillen, P.2
Jones, A.M.3
Greb, T.4
Dean, C.5
-
69
-
-
79959330166
-
Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts
-
Helliwell, C. A.; Robertson, M.; Finnegan, E. J.; Buzas, D. M.; Dennis, E. S. Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts. PLoS One 2011, 6, e2151.
-
(2011)
PLoS One
, vol.6
-
-
Helliwell, C.A.1
Robertson, M.2
Finnegan, E.J.3
Buzas, D.M.4
Dennis, E.S.5
-
70
-
-
84877354511
-
R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus
-
Sun, Q.; Csorba, T.; Skourti-Stathaki, K.; Proudfoot, N. J.; Dean, C. R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus. Science 2013, 340, 619-621.
-
(2013)
Science
, vol.340
, pp. 619-621
-
-
Sun, Q.1
Csorba, T.2
Skourti-Stathaki, K.3
Proudfoot, N.J.4
Dean, C.5
-
71
-
-
78650966670
-
Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
-
Heo, J. B.; Sung, S. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 2011, 331, 76-79.
-
(2011)
Science
, vol.331
, pp. 76-79
-
-
Heo, J.B.1
Sung, S.2
-
72
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang, K. C.; Chang, H. Y. Molecular mechanisms of long noncoding RNAs. Mol. Cell 2011, 43, 904-914.
-
(2011)
Mol. Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
73
-
-
28844473478
-
Short retroposons in eukaryotic genomes
-
Kramerov, D. A.; Vassetzky, N. S. Short retroposons in eukaryotic genomes. Int. Rev. Cytol. 2005, 247, 165-221.
-
(2005)
Int. Rev. Cytol
, vol.247
, pp. 165-221
-
-
Kramerov, D.A.1
Vassetzky, N.S.2
-
74
-
-
22044445814
-
Plant 7SL RNA genes belong to type 4 of RNA polymerase III-dependent genes that are composed of mixed promoters
-
Yukawa, Y.; Felis, M.; Englert, M.; Stojanov, M.; Matousek, J.; Beier, H.; Sugiura, M. Plant 7SL RNA genes belong to type 4 of RNA polymerase III-dependent genes that are composed of mixed promoters. Plant J. 2005, 43, 97-106.
-
(2005)
Plant J
, vol.43
, pp. 97-106
-
-
Yukawa, Y.1
Felis, M.2
Englert, M.3
Stojanov, M.4
Matousek, J.5
Beier, H.6
Sugiura, M.7
-
75
-
-
33644872219
-
Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation
-
Shin, H.; Shin, H. S.; Chen, R.; Harrison, M. J. Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation. Plant J. 2006, 45, 712-726.
-
(2006)
Plant J
, vol.45
, pp. 712-726
-
-
Shin, H.1
Shin, H.S.2
Chen, R.3
Harrison, M.J.4
-
76
-
-
48249157464
-
Regulatory network of microRNA399 and PHO2 by systemic signaling
-
Lin, S. I.; Chiang, S. F.; Lin, W. Y.; Chen, J. W.; Tseng, C. Y.; Wu, P. C.; Chiou, T. J. Regulatory network of microRNA399 and PHO2 by systemic signaling. Plant Physiol. 2008, 147, 732-746.
-
(2008)
Plant Physiol
, vol.147
, pp. 732-746
-
-
Lin, S.I.1
Chiang, S.F.2
Lin, W.Y.3
Chen, J.W.4
Tseng, C.Y.5
Wu, P.C.6
Chiou, T.J.7
-
77
-
-
41849109875
-
MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis
-
Pant, B. D.; Buhtz, A.; Kehr, J.; Scheible, W. R. MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J. 2008, 53, 731-738.
-
(2008)
Plant J
, vol.53
, pp. 731-738
-
-
Pant, B.D.1
Buhtz, A.2
Kehr, J.3
Scheible, W.R.4
-
78
-
-
84875750847
-
Wide-spread long non-coding RNAs (lncRNAs) as endogenous target mimics (eTMs) for microRNAs in plants
-
Wu, H. J.; Wang, Z. M.; Wang, M.; Wang, X. J. Wide-spread long non-coding RNAs (lncRNAs) as endogenous target mimics (eTMs) for microRNAs in plants. Plant Physiol. 2013, 161, 1875-1884.
-
(2013)
Plant Physiol
, vol.161
, pp. 1875-1884
-
-
Wu, H.J.1
Wang, Z.M.2
Wang, M.3
Wang, X.J.4
|