XA developmental switch coupled to the evolution of plasticity acts through a sulfatase

Cell

Volumn 155, Issue 4, 2013, Pages 922-

  Ragsdale, Erik J ^a   Müller, Manuela R ^a   Rödelsperger, Christian ^a   Sommer, Ralf J ^a  

^a MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

SULFATASE;

ARTICLE; DEVELOPMENTAL GENETICS; DEVELOPMENTAL STAGE; EPISTASIS; EUD 1 GENE; EVOLUTIONARY DEVELOPMENTAL BIOLOGY; FEMALE; GENE DOSAGE; GENE DUPLICATION; GENE MUTATION; GENE OVEREXPRESSION; GENETIC CONSERVATION; MALE; MORPHOLOGY; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PRIORITY JOURNAL; PRISTIONCHUS; REGULATOR GENE; REGULATORY MECHANISM; SEX DIFFERENCE; SIGNAL TRANSDUCTION;

NEMATODA; PRISTIONCHUS;

EID: 84887883669     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2013.09.054     Document Type: Article

References (58)

1. A. Abzhanov, M. Protas, B.R. Grant, P.R. Grant, and C.J. Tabin Bmp4 and morphological variation of beaks in Darwin's finches Science 305 2004 1462 1465
2. A. Antebi, W.H. Yeh, D. Tait, E.M. Hedgecock, and D.L. Riddle daf-12 encodes a nuclear receptor that regulates the dauer diapause and developmental age in C. elegans Genes Dev. 14 2000 1512 1527
3. G. Bento, A. Ogawa, and R.J. Sommer Co-option of the hormone-signalling module dafachronic acid-DAF-12 in nematode evolution Nature 466 2010 494 497
4. N. Bose, A. Ogawa, S.H. von Reuss, J.J. Yim, E.J. Ragsdale, R.J. Sommer, and F.C. Schroeder Complex small-molecule architectures regulate phenotypic plasticity in a nematode Angew. Chem. Int. Ed. Engl. 51 2012 12438 12443
5. P.M. Brakefield, F. Kesbeke, and P.B. Koch The regulation of phenotypic plasticity of eyespots in the butterfly Bicyclus anynana Am. Nat. 152 1998 853 860
6. B.T. Carroll, G.R. Dubyak, M.M. Sedensky, and P.G. Morgan Sulfated signal from ASJ sensory neurons modulates stomatin-dependent coordination in Caenorhabditis elegans J. Biol. Chem. 281 2006 35989 35996
7. G.K. Dhoot, M.K. Gustafsson, X.B. Ai, W.T. Sun, D.M. Standiford, and C.P. Emerson Jr. Regulation of Wnt signaling and embryo patterning by an extracellular sulfatase Science 293 2001 1663 1666
8. K.S. Dodgson, and B. Spencer Studies on sulphatases. 4. Arylsulphatase and β-glucuronidase concentrates from limpets Biochem. J. 55 1953 315 320
9. D.J. Emlen, I.A. Warren, A. Johns, I. Dworkin, and L.C. Lavine A mechanism of extreme growth and reliable signaling in sexually selected ornaments and weapons Science 337 2012 860 864
10. J. Glössl, W. Truppe, and H. Kresse Purification and properties of N-acetylgalactosamine 6-sulphate sulphatase from human placenta Biochem. J. 181 1979 37 46
11. M. Han, and P.W. Sternberg let-60, a gene that specifies cell fates during C. elegans vulval induction, encodes a ras protein Cell 63 1990 921 931
12. K. Hattori, M. Inoue, T. Inoue, H. Arai, and H. Tamura A novel sulfotransferase abundantly expressed in the dauer larvae of Caenorhabditis elegans J. Biochem. 139 2006 355 362
13. M. Herrmann, W.E. Mayer, and R.J. Sommer Sex, bugs and Haldane's rule: the nematode genus Pristionchus in the United States Front. Zool. 3 2006 14
14. M. Herrmann, W.E. Mayer, R.L. Hong, S. Kienle, R. Minasaki, and R.J. Sommer The nematode Pristionchus pacificus (Nematoda: Diplogastridae) is associated with the oriental beetle Exomala orientalis (Coleoptera: Scarabaeidae) in Japan Zoolog. Sci. 24 2007 883 889
15. M. Herrmann, S. Kienle, J. Rochat, W.E. Mayer, and R.J. Sommer Haplotype diversity of the nematode Pristionchus pacificus on Réunion in the Indian Ocean suggests multiple independent invasions Biol. J. Linn. Soc. 100 2010 170 179
16. K. Kamimura, T. Koyama, H. Habuchi, R. Ueda, M. Masu, K. Kimata, and H. Nakato Specific and flexible roles of heparan sulfate modifications in Drosophila FGF signaling J. Cell Biol. 174 2006 773 778
17. N. Kanzaki, E.J. Ragsdale, M. Herrmann, W.E. Mayer, and R.J. Sommer Description of three Pristionchus species (Nematoda: Diplogastridae) from Japan that form a cryptic species complex with the model organism P. pacificus Zoolog. Sci. 29 2012 403 417
18. N. Kanzaki, E.J. Ragsdale, M. Herrmann, and R.J. Sommer Two new species of Pristionchus (Rhabditida: Diplogastridae): P. fissidentatus n. sp. from Nepal and La Réunion Island and P. elegans n. sp. from Japan J. Nematol. 44 2012 80 91
19. N. Kanzaki, E.J. Ragsdale, M. Herrmann, W. Röseler, and R.J. Sommer Pristionchus bucculentus n. sp. (Rhabditida: Diplogastridae) isolated from a shining mushroom beetle (Coleoptera: Scaphidiidae) in Hokkaido, Japan J. Nematol. 45 2013 78 86
20. N. Kanzaki, E.J. Ragsdale, M. Herrmann, W. Röseler, and R.J. Sommer Two new species of Pristionchus (Nematoda: Diplogastridae) support the biogeographic importance of Japan for the evolution of the genus Pristionchus and the model system P. pacificus Zoolog. Sci. 30 2013 680 692
21. N. Kanzaki, E.J. Ragsdale, M. Herrmann, V. Susoy, and R.J. Sommer Two androdioecious and one dioecious new species of Pristionchus (Nematoda: Diplogastridae): new reference points for the evolution of reproductive mode J. Nematol. 45 2013 172 194
22. K. Kiontke, and D.H.A. Fitch Phenotypic plasticity: different teeth for different feasts Curr. Biol. 20 2010 R710 R712
23. T. Litjens, D.A. Brooks, C. Peters, G.J. Gibson, and J.J. Hopwood Identification, expression, and biochemical characterization of N-acetylgalactosamine-4-sulfatase mutations and relationship with clinical phenotype in MPS-VI patients Am. J. Hum. Genet. 58 1996 1127 1134
24. M. Long, E. Betrán, K. Thornton, and W. Wang The origin of new genes: glimpses from the young and old Nat. Rev. Genet. 4 2003 865 875
25. G. Lukatela, N. Krauss, K. Theis, T. Selmer, V. Gieselmann, K. von Figura, and W. Saenger Crystal structure of human arylsulfatase A: the aldehyde function and the metal ion at the active site suggest a novel mechanism for sulfate ester hydrolysis Biochemistry 37 1998 3654 3664
26. M. Matsuda, Y. Nagahama, A. Shinomiya, T. Sato, C. Matsuda, T. Kobayashi, C.E. Morrey, N. Shibata, S. Asakawa, and N. Shimizu DMY is a Y-specific DM-domain gene required for male development in the medaka fish Nature 417 2002 559 563
27. S.W. Miller, D.C. Hayward, T.A. Bunch, D.J. Miller, E.E. Ball, V.J. Bardwell, D. Zarkower, and D.L. Brower A DM domain protein from a coral, Acropora millepora, homologous to proteins important for sex determination Evol. Dev. 5 2003 251 258
28. K. Mitsunaga-Nakatsubo, Y. Akimoto, H. Kawakami, and K. Akasaka Sea urchin arylsulfatase, an extracellular matrix component, is involved in gastrulation during embryogenesis Dev. Genes Evol. 219 2009 281 288
29. A.P. Moczek Developmental capacitance, genetic accommodation, and adaptive evolution Evol. Dev. 9 2007 299 305
30. A.P. Moczek, S. Sultan, S. Foster, C. Ledón-Rettig, I. Dworkin, H.F. Nijhout, E. Abouheif, and D.W. Pfennig The role of developmental plasticity in evolutionary innovation Proc. Biol. Sci. 278 2011 2705 2713
31. K. Morgan, A. McGaughran, L. Villate, M. Herrmann, H. Witte, G. Bartelmes, J. Rochat, and R.J. Sommer Multi locus analysis of Pristionchus pacificus on La Réunion Island reveals an evolutionary history shaped by multiple introductions, constrained dispersal events and rare out-crossing Mol. Ecol. 21 2012 250 266
32. H.F. Nijhout Development and evolution of adaptive polyphenisms Evol. Dev. 5 2003 9 18
33. M. Pigliucci Phenotypic Plasticity: Beyond Nature and Nurture 2001 Johns Hopkins University Press Baltimore
34. Pires da Silva, A. Pristionchus pacificus genetic protocols (July 17, 2006), Wormbook, ed. The C. Elegans Research Community, Wormbook http://www.wormbook.org.
35. E.J. Ragsdale, N. Kanzaki, W. Röseler, M. Herrmann, and R.J. Sommer Three new species of Pristionchus (Nematoda: Diplogastridae) show morphological divergence through evolutionary intermediates of a novel feeding polymorphism Zool. J. Linn. Soc. 168 2013 671 698
36. C.S. Raymond, C.E. Shamu, M.M. Shen, K.J. Seifert, B. Hirsch, J. Hodgkin, and D. Zarkower Evidence for evolutionary conservation of sex-determining genes Nature 391 1998 691 695
37. B. Schlager, X.Y. Wang, G. Braach, and R.J. Sommer Molecular cloning of a dominant roller mutant and establishment of DNA-mediated transformation in the nematode Pristionchus pacificus Genesis 47 2009 300 304
38. C.D. Schlichting Origins of differentiation via phenotypic plasticity Evol. Dev. 5 2003 98 105
39. B. Schmidt, T. Selmer, A. Ingendoh, and K. von Figura A novel amino acid modification in sulfatases that is defective in multiple sulfatase deficiency Cell 82 1995 271 278
40. M.H. Schulz, D.R. Zerbino, M. Vingron, and E. Birney Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels Bioinformatics 28 2012 1086 1092
41. V. Serobyan, E.J. Ragsdale, M.R. Müller, and R.J. Sommer Feeding plasticity in the nematode Pristionchus pacificus is influenced by sex and social context and is linked to developmental speed Evol. Dev. 15 2013 161 170
42. M.A. Simon, D.D. Bowtell, G.S. Dodson, T.R. Laverty, and G.M. Rubin Ras1 and a putative guanine nucleotide exchange factor perform crucial steps in signaling by the sevenless protein tyrosine kinase Cell 67 1991 701 716
43. R.J. Sommer, and A. McGaughran The nematode Pristionchus pacificus as a model system for integrative studies in evolutionary biology Mol. Ecol. 22 2013 2380 2393
44. W. Sudhaus, and A. Fürst von Lieven A phylogenetic classification and catalogue of the Diplogastridae (Secernentea, Nematoda) J. Nematode Morphol. System 6 2003 43 90
45. D. Tautz, and T. Domazet-Lošo The evolutionary origin of orphan genes Nat. Rev. Genet. 12 2011 692 702
46. A. Waldow, B. Schmidt, T. Dierks, R. von Bülow, and K. von Figura Amino acid residues forming the active site of arylsulfatase A. Role in catalytic activity and substrate binding J. Biol. Chem. 274 1999 12284 12288
47. M.J. West-Eberhard Developmental Plasticity and Evolution 2003 Oxford University Press Oxford
48. M.J. West-Eberhard Developmental plasticity and the origin of species differences Proc. Natl. Acad. Sci. USA 102 Suppl 1 2005 6543 6549
49. A.S. Wilkins The Evolution of Developmental Pathways 2002 Sinauer Sunderland
50. G. Achaz Frequency spectrum neutrality tests: one for all and all for one Genetics 183 2009 249 258
51. R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 2004 1792 1797
52. C. Kenning, I. Kipping, and R.J. Sommer Isolation of mutations with dumpy-like phenotypes and of collagen genes in the nematode Pristionchus pacificus Genesis 40 2004 176 183
53. R. Rae, H. Witte, C. Rödelsperger, and R.J. Sommer The importance of being regular: Caenorhabditis elegans and Pristionchus pacificus defecation mutants are hypersusceptible to bacterial pathogens Int. J. Parasitol. 42 2012 747 753
54. J. Srinivasan, W. Sinz, C. Lanz, A. Brand, R. Nandakumar, G. Raddatz, H. Witte, H. Keller, I. Kipping, and A. Pires-daSilva A bacterial artificial chromosome-based genetic linkage map of the nematode Pristionchus pacificus Genetics 162 2002 129 134
55. J. Srinivasan, W. Sinz, T. Jesse, L. Wiggers-Perebolte, K. Jansen, J. Buntjer, M. van der Meulen, and R.J. Sommer An integrated physical and genetic map of the nematode Pristionchus pacificus Mol. Genet. Genomics 269 2003 715 722
56. A. Stamatakis RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Bioinformatics 22 2006 2688 2690
57. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods Mol. Biol. Evol. 28 2011 2731 2739
58. C. Trapnell, A. Roberts, L. Goff, G. Pertea, D. Kim, D.R. Kelley, H. Pimentel, S.L. Salzberg, J.L. Rinn, and L. Pachter Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nat. Protoc. 7 2012 562 578