From connectivity models to region labels: Identifying foci of a neurological disorder

IEEE Transactions on Medical Imaging

Volumn 32, Issue 11, 2013, Pages 2078-2098

  Venkataraman, Archana ^a   Kubicki, Marek ^b   Golland, Polina ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

Author keywords

Brain connectivity; diffusion weighted imaging (DWI); functional magnetic resonance imaging (fMRI); population analysis

Indexed keywords

BRAIN CONNECTIVITY; DIFFUSION WEIGHTED IMAGING; EXPECTATION-MAXIMIZATION ALGORITHMS; FUNCTIONAL CONNECTIVITY; FUNCTIONAL MAGNETIC RESONANCE IMAGING; NEUROLOGICAL DISORDERS; PAIRWISE CONNECTIVITIES; POPULATION ANALYSIS;

ALGORITHMS; IMAGE SEGMENTATION; MAGNETIC RESONANCE IMAGING;

NEUROLOGY;

ARTICLE; CONNECTOME; CONTROLLED STUDY; DIFFUSION WEIGHTED IMAGING; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; NEUROANATOMY; NEUROLOGIC DISEASE; POPULATION RESEARCH; SCHIZOPHRENIA;

ALGORITHMS; BRAIN MAPPING; CASE-CONTROL STUDIES; DIFFUSION TENSOR IMAGING; HUMANS; MALE; MODELS, NEUROLOGICAL; NERVE NET; SCHIZOPHRENIA;

EID: 84887839277     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2013.2272976     Document Type: Article

References (43)

1. R. L. Buckner and J. L. Vincent, "Unrest at rest: Default activity and spontaneous network correlations, " NeuroImage, vol. 37, pp. 1091-1096, 2007.
2. M. D. Fox and M. E. Raichle, "Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging, " Nature, vol. 8, pp. 700-711, 2007.
3. M. D. Greicius, B. H. Flores, V. Menon, G. H. Glover, H. B. Solvason, H. Kenna, A. L. Reiss, and A. F. Schatzberg, "Resting-state functional connectivity in major depression: Abnormally increased contributions from subgenual cingulate cortex and thalamus, " Biol. Psychiatry, vol. 62, pp. 429-437, 2007.
4. M. Liang, Y. Zhou, T. Jiang, Z. Liu, L. Tian, H. Liu, and Y. Hao, "Widespread functional disconnectivity in schizophrenia with resting-state functional magnetic resonance imaging, " Neuroreport Brain Imag., vol. 17, pp. 209-213, 2006.
5. M. Ke, X. Huang, H. Shen, Z. Zhou, X. Chen, and D. Hu, "Combined analysis for resting state fMRI and DTI data reveals abnormal development of function-structure in early-onset schizophrenia, " Lecture Notes Artif. Intell., vol. 5009, pp. 628-635, 2008.
6. Y. Zhou, N. Shu, Y. Liu, M. SOng, Y. Hao, H. Liu, C. Yu, Z. Liu, and T. Jiang, "Altered resting-state functional connectivity and anatomical connectivity of hippocampus in schizophrenia, " Schizophrenia Res., vol. 100, pp. 120-132, 2008.
7. M. J. Jafri, G. D. Pearlson, M. Stevens, and V. D. Calhoun, "A method for functional network connectivity among spatially independent resting-state components in schizophrenia, " Neuroimage, vol. 39, pp. 1666-81, 2008.
8. M. Jafri and V. Calhoun, "Functional classification of schizophrenia using feed forward neural networks, " in Proc. Int. Conf. IEEE Eng. Med. Biol. Soc., 2006, pp. 6631-6634.
9. A. Venkataraman, Y. Rathi, M. Kubicki, C.-F. Westin, and P. Golland, "Joint modeling of anatomical and functional connectivity for population studies, " IEEE Trans. Med. Imag., vol. 31, no. 2, pp. 164-182, Feb. 2012.
10. A. Venkataraman, M. Kubicki, C.-F. Westin, and P. Golland, "Robust feature selection in resting-state fMRI connectivity based on population studies, " in Proc. IEEE Comput. Soc. Workshop Math. Methods Biomed. Image Anal., 2010, pp. 63-70.
11. M. D. Greicius, K. Supekar, V. Menon, and R. F. Dougherty, "Resting-state functional connectivity reflects structural connectivity in the default mode network, " Cerebral Cortex, vol. 19, pp. 72-78, 2008.
12. M. A. Koch, D. G. Norris, and M. Hund-Georgiadis, "An investigation of functional and anatomical connectivity using magnetic resonance imaging, " Neuroimage, vol. 16, pp. 241-250, 2002.
13. F. Deligianni, G. Varoquaux, B. Thirion, E. Robinson, D. Sharp, A. Edwards, and D. Rueckert, "A probabilistic framework to infer brain functional connectivity from anatomical connections, " in IPMI: Information Processing in Medical Imaging. New York: Springer, 2011, pp. 296-307.
14. A. Venkataraman, M. Kubicki, and P. Golland, "From brain connectivity models to identifying foci of a neurological disorder, " in Proc. Int. Conf. Med. Image Comput. Computer Assist. Intervent., 2012, pp. 697-704, LNCS 7510.
15. S. Gabrieli-Whitfield, H. W. Thermenos, Z. Milanovic, M. T. Tsuang, S. V. Faraone, R. W. McCarley, M. E. Shenton, A. I. Green, A. Nieto-Castanon, P. LaViolette, J. Wojcik, J. D. Gabrieli, and L. J. Seidman, "Hyperactivity and hyperconnectivity of the default network in schizophrenia and in first-degree relatives of persons with schizophrenia, " Nat. Acad. Sci. USA, pp. 1279-1284, 2009.
16. J. Burns, D. Job, M. E. Bastin, H. Whalley, T. MacGillivray, E. C. John-stone, and S. M. Lawrie, "Structural disconnectivity in schizophrenia: A diffusion tensor magnetic resonance imaging study, " Br. J. Psychiatry, vol. 182, pp. 439-443, 2003.
17. K. Friston, A. Holmes, K. Worsley, J.-P. Poline, C. Frith, and R. Frack-owiak, "Statistical parametric maps in functional imaging: A general linear approach, " Human Brain Mapp., vol. 2, pp. 189-210, 1995.
18. Y. Zhou, M. Liang, T. Jiang, L. Tian, Y. Liu, Z. Liu, H. Liu, and F. Kuang, "Functional dysconnectivity of the dorsolateral prefrontal cortex in first-episode schizophrenia using resting-state fMRI, " Neuro Lett., vol. 417, pp. 297-302, 2007.
19. L. Breiman, "Random forests, " Mach. Learn., vol. 45, pp. 5-32, 2001.
20. P. Basser and C. Pierpaoli, "Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI, " J. Magn. Reson., vol. 111, pp. 209-219, 1996.
21. M. D. Greicius et al., "Resting-state functional connectivity in the default mode network, " Cerebral Cortex, vol. 19, pp. 72-78, 2009.
22. C. J. Honey, R. Kotter, M. Breakspear, and O. Sporns, "Network structure of cerebral cortex shapes functional connectivity on multiple time scales, " Proc. Nat. Acad. Sci., vol. 104, pp. 10240-10245, 2007.
23. O. Sporns, G. Tononi, and G. M. Edelman, "Theoretical neuroanatomy: Relating anatomical and functional connectivity in graphs and cortical connection matrices, " Cerebral Cortex, vol. 10, pp. 127-41, 2000.
24. C. J. Honey, O. Sporns, L. Cammoun, X. Gigandet, J. P. Thiran, R. Meuli, and P. Hagmann, "Predicting human resting-state functional connectivity from structural connectivity, " Proc. Nat. Acad. Sci., vol. 106, pp. 2035-2040, 2009.
25. R. Tandon, M. S. Keshavan, and H. A. Nasrallah, "Schizophrenia, 'just the facts': What we know in 2008, Part 1: Overview, " Schizophrenia Res., vol. 100, pp. 4-19, 2008.
26. M. E. Shenton, C. C. Dickey, M. Frumin, and R. W. McCarley, "A review of MRI findings in schizophrenia, " Schizophrenia Res., vol. 49, pp. 1-52, 2001.
27. R. L. Mitchell, R. Elliott, and P. W. Woodruff, "fMRI and cognitive dysfunction in schizophrenia, " Trends Cogn. Sci., vol. 5, pp. 71-81, 2001.
28. K. J. Friston and C. D. Frith, "Schizophrenia: A disconnection syndrome?, " Clin. Neurosci., vol. 3, pp. 89-97, 1995.
29. M. Kubicki, R. McCarley, C.-F. Westin, H.-J. Park, S. Maier, R. Kikinis, F. A. Jolesz, and M. E. Shenton, "A review of diffusion tensor imaging studies in schizophrenia, " J. Psychiatric Res., vol. 41, pp. 15-30, 2007.
30. R. L. Bluhm, J. Miller, R. A. Lanius, E. A. Osuch, K. Boksman, R. W. Neufeld, J. Théberge, B. Schaefer, and P. Williamson, "Spontaneous low-frequency fluctuations in the bold signal in schizophrenic patients: Abnormalities in the default network, " Schizophrenia Bull., pp. 1-9, 2007.
31. R. L. Buckner, J. R. Andrews-Hanna, and D. L. Schacter, "The brain's default network anatomy, function, and relevence to disease, " Ann. NY Acad. Sci., vol. 1124, pp. 1-38, 2008.
32. K. Lee, T. Yoshida, M. Kubicki, S. Bouix, C.-F. Westin, G. Kindlmann, M. Niznikiewicz, A. Cohen, R. McCarley, and M. Shenton, "Increased diffusivity in superior temporal gyrus in patients with schizophrenia: A diffusion tensor imaging study, " Schizophrenia Res., vol. 108, pp. 33-40, 2009.
33. M. Jordan, Z. Ghahramani, T. S. Jaakkola, and L. K. Saul, "An introduction to variational methods for graphical models, " Mach. Learn., vol. 37, pp. 183-233, 1999.
34. A. Dempster, N. M. Laird, and D. B. Rubin, "Maximum likelihood from incomplete data via the em algorithm, " J. R. Stat. Soc., vol. 39, pp. 1-38, 1977.
35. B. Fischl, D. H. Salat, A. J. van der Kouwe, N. Makris, F. Ségonne, B. T. Quinn, and A. M. Dale, "Sequence-independent segmentation of magnetic resonance images, " Neuroimage, vol. 23, pp. 69-84, 2004.
36. S. M. Smith, M. Jenkinson, M. W. Woolrich, C. F. Beckmann, T. E. Behrens, H. Johansen-Bern, P. R. Bannister, M. D. Luca, I. Drobnjak, D. E. Flitney, R. K. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. D. Stefano, J. M. Brady, and P. M. Matthews, "Advances in functional and structural MR image analysis and implementation as FSL, " Neu-roimage, vol. 23, pp. 208-219, 2004.
37. J. G. Malcolm, M. E. Shenton, and Y. Rathi, "Neural tractography using an unscented Kalman filter, " in Proc. Int. Conf. Inf. Process. Med. Imag., 2009, vol. 21, pp. 126-138.
38. K. V. Dijk, T. Hedden, A. Venkataraman, K. Evans, S. Lazar, and R. Buckner, "Intrinsic functional connectivity as a tool for human con-nectomics: Theory, properties and optimization, " J. Neurophysiol., vol. 103, pp. 297-321, 2010.
39. K. Kasai, M. Shenton, D. Salisbury, Y. Hirayasu, T. Onitsuka, M. Spencer, D. Yurgelun-Todd, R. Kikinis, F. Jolesz, and R. McCarley, "Progressive decrease of left Heschl gyrus and planum temporale gray matter volume in first-episode schizophrenia, a longitudinal magnetic resonance imaging study, " Arch. General Psychiatry, vol. 60, pp. 766-775, 2003.
40. G. Pearlson, P. Barta, R. Powers, R. Menon, S. Richards, E. Aylward, E. Federman, G. Chase, R. Petty, and A. Tien, "Median and superior temporal gyral volumes and cerebral asymmetry in schizophrenia versus bipolar disorder, " Biol. Psychiatry, vol. 41, pp. 1-14, 1997.
41. A. G. Garrity, G. D. Pearlson, K. McKiernan, D. Lloyd, K. A. Kiehl, and V. D. Calhoun, "Aberrant 'default mode' functional connectivity in schizophrenia, " Am. J. Psychiatry, vol. 164, pp. 450-457, 2007.
42. Y. Zhou, M. Liang, T. Jiang, L. Tian, Y. Liu, Z. Liu, H. Liu, and F. Kuang, "Functional dysconnectivity of the dorsolateral prefrontal cortex in first-episode schizophrenia using resting-state fMRI, " Neu-rosci. Lett., vol. 417, pp. 297-302, 2007.
43. E. Melonakos, M. Shenton, Y. Rathi, D. Terry, S. Bouix, and M. Kubicki, "Voxel-based morphometry (VBM) studies in schizophrenia-Can white matter changes be reliably detected with VBM, " Psychiatry Res., vol. 193, pp. 65-70, 2011.