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Volumn 4, Issue 21, 2013, Pages 3570-3573

Knotting a protein in explicit solvent

Author keywords

complex topology; energy landscape theory; protein folding; salt bridge; slipknots; structure based model

Indexed keywords

COMPLEX TOPOLOGY; ENERGY LANDSCAPE; SALT BRIDGES; SLIPKNOTS; STRUCTURE-BASED;

EID: 84887638609     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz401842f     Document Type: Article
Times cited : (60)

References (21)
  • 1
    • 34548575206 scopus 로고    scopus 로고
    • Identification of Rare Slipknots in Proteins and their Implications for Stability and Folding
    • King, N. P.; Yeates, E. O.; Yeates, T. O. Identification of Rare Slipknots in Proteins and their Implications for Stability and Folding J. Mol. Biol. 2007, 373, 153-166
    • (2007) J. Mol. Biol. , vol.373 , pp. 153-166
    • King, N.P.1    Yeates, E.O.2    Yeates, T.O.3
  • 3
    • 84856113243 scopus 로고    scopus 로고
    • Knot Formation in Newly Translated Proteins is Spontaneous and Accelerated by Chaperonins
    • Mallam, A. L.; Jackson, S. E. Knot Formation In Newly Translated Proteins is Spontaneous and Accelerated by Chaperonins Nat. Chem. Biol. 2011, 8, 147-153
    • (2011) Nat. Chem. Biol. , vol.8 , pp. 147-153
    • Mallam, A.L.1    Jackson, S.E.2
  • 4
    • 77957259237 scopus 로고    scopus 로고
    • Slipknotting Upon Native-Like Loop Formation in a Trefoil Knot Protein
    • Noel, J. K.; Sułkowska, J. I.; Onuchic, J. N. Slipknotting Upon Native-Like Loop Formation in a Trefoil Knot Protein Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 15403-15408
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 15403-15408
    • Noel, J.K.1    Sułkowska, J.I.2    Onuchic, J.N.3
  • 9
    • 84864054045 scopus 로고    scopus 로고
    • The Role of Non-Native Interactions in the Folding of Knotted Proteins
    • Škrbić, T.; Micheletti, C.; Faccioli, P. The Role of Non-Native Interactions in the Folding of Knotted Proteins PLoS Comput. Biol. 2012, 8, E1002504
    • (2012) PLoS Comput. Biol. , vol.8 , pp. 1002504
    • Škrbić, T.1    Micheletti, C.2    Faccioli, P.3
  • 11
    • 33748518255 scopus 로고    scopus 로고
    • Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters
    • Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.; Simmerling, C. Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters Proteins 2006, 65, 712-25
    • (2006) Proteins , vol.65 , pp. 712-725
    • Hornak, V.1    Abel, R.2    Okur, A.3    Strockbine, B.4    Roitberg, A.5    Simmerling, C.6
  • 13
    • 63449135082 scopus 로고    scopus 로고
    • An All-Atom Structure-Based Potential for Proteins: Bridging Minimal Models with All-Atom Empirical Forcefields
    • Whitford, P. C.; Noel, J. K.; Gosavi, S.; Schug, A.; Sanbonmatsu, K. Y.; Onuchic, J. N. An All-Atom Structure-Based Potential for Proteins: Bridging Minimal Models with All-Atom Empirical Forcefields Proteins 2009, 75, 430-41
    • (2009) Proteins , vol.75 , pp. 430-441
    • Whitford, P.C.1    Noel, J.K.2    Gosavi, S.3    Schug, A.4    Sanbonmatsu, K.Y.5    Onuchic, J.N.6
  • 14
  • 17
    • 84879475899 scopus 로고    scopus 로고
    • Backbone NMR Assignments of a Topologically Knotted Protein in Urea-Denatured State
    • 10.1007/s12104-013-9501-7
    • Hsieh, S.-J. M.; Mallam, A. L.; Jackson, S. E.; Hsu, S.-T. D. Backbone NMR Assignments of a Topologically Knotted Protein in Urea-Denatured State Biomol. NMR Assign. 2013, 10.1007/s12104-013-9501-7
    • (2013) Biomol. NMR Assign.
    • Hsieh, S.-J.M.1    Mallam, A.L.2    Jackson, S.E.3    Hsu, S.-T.D.4
  • 19
    • 73649114614 scopus 로고    scopus 로고
    • Jamming Proteins with Slipknots and Their Free Energy Landscape
    • Sułkowska, J. I.; Sułkowski, P.; Onuchic, J. N. Jamming Proteins with Slipknots and Their Free Energy Landscape Phys. Rev. Lett. 2009, 103, 268103
    • (2009) Phys. Rev. Lett. , vol.103 , pp. 268103
    • Sułkowska, J.I.1    Sułkowski, P.2    Onuchic, J.N.3
  • 20
    • 84863470496 scopus 로고    scopus 로고
    • Mechanically Untying a Protein Slipknot: Multiple Pathways Revealed by Force Spectroscopy and Steered Molecular Dynamics Simulations
    • He, C.; Genchev, G. Z.; Lu, H.; Li, H. Mechanically Untying a Protein Slipknot: Multiple Pathways Revealed by Force Spectroscopy and Steered Molecular Dynamics Simulations J. Am. Chem. Soc. 2012, 134, 10428-35
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 10428-10435
    • He, C.1    Genchev, G.Z.2    Lu, H.3    Li, H.4
  • 21
    • 84879230918 scopus 로고    scopus 로고
    • Tightening and Untying the Knot in Human Carbonic Anhydrase III
    • Dzubiella, J. Tightening and Untying the Knot in Human Carbonic Anhydrase III J. Phys. Chem. Lett. 2013, 4, 1829-33
    • (2013) J. Phys. Chem. Lett. , vol.4 , pp. 1829-1833
    • Dzubiella, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.