Backbone NMR assignments of a topologically knotted protein in urea-denatured state

Biomolecular NMR Assignments

Volumn 8, Issue 2, 2014, Pages 283-285

  Hsieh, Shu Ju Micky ^a   Mallam, Anna L ^b   Jackson, Sophie E ^b   Hsu, Shang Te Danny ^a,b,c,d  

^a INSTITUTE OF BIOLOGICAL CHEMISTRY   (Taiwan)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^d NATIONAL TSING HUA UNIVERSITY   (Taiwan)

Author keywords

Chemical denaturation; Knotted protein; Protein folding; YbeA

Indexed keywords

ESCHERICHIA COLI PROTEIN; METHYLTRANSFERASE; RLMH PROTEIN, E COLI; UREA;

CHEMISTRY; DRUG EFFECTS; ENZYMOLOGY; ESCHERICHIA COLI; NUCLEAR MAGNETIC RESONANCE; PROTEIN DENATURATION;

ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; METHYLTRANSFERASES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN DENATURATION; UREA;

EID: 84879475899     PISSN: 18742718     EISSN: 1874270X     Source Type: Journal    
DOI: 10.1007/s12104-013-9501-7     Document Type: Article

References (9)

1. Camilloni C, De Simone A, Vranken WF, Vendruscolo M (2012) Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts. Biochem US 51:2224–2231
2. Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293
3. Hsu ST, Behrens C, Cabrita LD, Dobson CM (2009a) 1H, 15N and 13C assignments of yellow fluorescent protein (YFP) venus. Biomol NMR Assign 3:67–72
4. Hsu ST, Cabrita LD, Christodoulou J, Dobson CM (2009b) 1H, 15N and 13C assignments of domain 5 of Dictyostelium discoideum gelation factor (ABP-120) in its native and 8 M urea-denatured states. Biomol NMR Assign 3:29–31
5. Mallam AL, Jackson SE (2007) A comparison of the folding of two knotted proteins: YbeA and YibK. J Mol Biol 366:650–665
6. Mallam AL, Morris ER, Jackson SE (2008a) Exploring knotting mechanisms in protein folding. Proc Natl Acad Sci USA 105:18740–18745
7. Mallam AL, Onuoha SC, Grossmann JG, Jackson SE (2008b) Knotted fusion proteins reveal unexpected possibilities in protein folding. Mol Cell 30:642–648
8. Mallam AL, Rogers JM, Jackson SE (2010) Experimental detection of knotted conformations in denatured proteins. Proc Natl Acad Sci USA 107:8189–8194
9. Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Douthwaite S (2008) YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA. RNA 14:2234–2244