-
1
-
-
0036644865
-
Genome sequence assembly: algorithms and issues
-
Pop M, Salzberg S, Shumway M: Genome sequence assembly: algorithms and issues. Computer 2002, 47-54
-
(2002)
Computer
, pp. 47-54
-
-
Pop, M.1
Salzberg, S.2
Shumway, M.3
-
2
-
-
0025269067
-
Inference of haplotypes from PCR-amplified samples of diploid populations
-
Clark AG: Inference of haplotypes from PCR-amplified samples of diploid populations. Mol Biol Evol 1990, 7(2):111-122
-
(1990)
Mol Biol Evol
, vol.7
, Issue.2
, pp. 111-122
-
-
Clark, A.G.1
-
3
-
-
27544473944
-
A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
-
Salem R, Wessel J, Schork N: A comprehensive literature review of haplotyping software and methods for use with unrelated individuals. Human Genomics 2005, 2:39-66
-
(2005)
Human Genomics
, vol.2
, pp. 39-66
-
-
Salem, R.1
Wessel, J.2
Schork, N.3
-
4
-
-
44949250815
-
Viral Population Estimation Using Pyrosequencing
-
Eriksson N, Pachter L, Mitsuya Y, Rhee S, Wang C, Gharizadeh B, Ronaghi M, Shafer R, Beerenwinkel N: Viral Population Estimation Using Pyrosequencing. PLoS Computational Biology 2008, 4(5):e1000074+
-
(2008)
PLoS Computational Biology
, vol.4
, Issue.5
-
-
Eriksson, N.1
Pachter, L.2
Mitsuya, Y.3
Rhee, S.4
Wang, C.5
Gharizadeh, B.6
Ronaghi, M.7
Shafer, R.8
Beerenwinkel, N.9
-
5
-
-
78649901946
-
Error correction of nextgeneration sequencing data and reliable estimation of HIV quasispecies
-
Zagordi O, Klein R, Dãumer M, Beerenwinkel N: Error correction of nextgeneration sequencing data and reliable estimation of HIV quasispecies. Nucleic Acids Research 2010, 38(21):7400-7409
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.21
, pp. 7400-7409
-
-
Zagordi, O.1
Klein, R.2
Dãumer, M.3
Beerenwinkel, N.4
-
6
-
-
77949302709
-
Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing
-
Wheat C: Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing. Genetica 2010, 138(4):433-451
-
(2010)
Genetica
, vol.138
, Issue.4
, pp. 433-451
-
-
Wheat, C.1
-
7
-
-
35748953779
-
Locus-and population-specific selection and differentiation between incipient species of Anopheles gambiae
-
Turner T, Hahn M: Locus-and population-specific selection and differentiation between incipient species of Anopheles gambiae. Molecular Biology and Evolution 2007, 24(9):2132-2138
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.9
, pp. 2132-2138
-
-
Turner, T.1
Hahn, M.2
-
8
-
-
41149167170
-
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
-
Vera C, Wheat C, Fescemyer H, Frilander M, Crawford D, Hanski I, Marden J: Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology 2008, 17(7):1636-1647
-
(2008)
Molecular Ecology
, vol.17
, Issue.7
, pp. 1636-1647
-
-
Vera, C.1
Wheat, C.2
Fescemyer, H.3
Frilander, M.4
Crawford, D.5
Hanski, I.6
Marden, J.7
-
9
-
-
79952662416
-
Ecological genetics and genomics of plant defences: evidence and approaches
-
Anderson JT, Mitchell-Olds T: Ecological genetics and genomics of plant defences: evidence and approaches. Funct Ecol 2011, 25:312-324
-
(2011)
Funct Ecol
, vol.25
, pp. 312-324
-
-
Anderson, J.T.1
Mitchell-Olds, T.2
-
10
-
-
77952183473
-
Population level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon
-
O'Neil ST, Dzurisin JDK, Carmichael R, Lobo NF, Emrich SJ, Hellmann JJ: Population level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon. BMC Genomics 2010, 11:310+
-
(2010)
BMC Genomics
, vol.11
-
-
O'Neil, S.T.1
Dzurisin, J.D.K.2
Carmichael, R.3
Lobo, N.F.4
Emrich, S.J.5
Hellmann, J.J.6
-
11
-
-
78951476007
-
The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus
-
Ewen-Campen B, Shaner N, Panfilio KA, Suzuki Y, Roth S, Extavour CG: The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus. BMC Genomics 2011, 12:61
-
(2011)
BMC Genomics
, vol.12
, pp. 61
-
-
Ewen-Campen, B.1
Shaner, N.2
Panfilio, K.A.3
Suzuki, Y.4
Roth, S.5
Extavour, C.G.6
-
14
-
-
0348226177
-
The haplotyping problem: an overview of computational models and solutions
-
Bonizzoni P, Vedova GD, Dondi R, Li J: The haplotyping problem: an overview of computational models and solutions. Journal of Computer Science and Technology 2003, 18(6):675-688
-
(2003)
Journal of Computer Science and Technology
, vol.18
, Issue.6
, pp. 675-688
-
-
Bonizzoni, P.1
Vedova, G.D.2
Dondi, R.3
Li, J.4
-
15
-
-
84862585151
-
Theory and algorithms for the haplotype assembly problem
-
Schwartz R: Theory and algorithms for the haplotype assembly problem. Communications in Information and Systems 2010, 10:23-38
-
(2010)
Communications in Information and Systems
, vol.10
, pp. 23-38
-
-
Schwartz, R.1
-
16
-
-
77950175032
-
Computational models and algorithms for the single individual haplotyping problem
-
Xie M, Wang J, Chen J, Wu J, Liu X: Computational models and algorithms for the single individual haplotyping problem. Current Bioinformatics 2010, 5:18-28
-
(2010)
Current Bioinformatics
, vol.5
, pp. 18-28
-
-
Xie, M.1
Wang, J.2
Chen, J.3
Wu, J.4
Liu, X.5
-
17
-
-
17744388551
-
Polynomial and APX-hard cases of the individual haplotyping problem
-
Bafna V, Istrail S, Lancia G, Rizzi R: Polynomial and APX-hard cases of the individual haplotyping problem. Theoretical Computer Science 2005, 335:109-125
-
(2005)
Theoretical Computer Science
, vol.335
, pp. 109-125
-
-
Bafna, V.1
Istrail, S.2
Lancia, G.3
Rizzi, R.4
-
18
-
-
36549019057
-
The complexity of the single individual SNP haplotyping problem
-
Cilibrasi R, Leo V, Kelk S, Tromp J: The complexity of the single individual SNP haplotyping problem. Algorithmica 2007, 49:13-36
-
(2007)
Algorithmica
, vol.49
, pp. 13-36
-
-
Cilibrasi, R.1
Leo, V.2
Kelk, S.3
Tromp, J.4
-
19
-
-
36348977063
-
A dynamic programming algorithm for the k-haplotyping problem
-
Li Z, Wu L, Zhao Y, Zhang X: A dynamic programming algorithm for the k-haplotyping problem. Acta Mathematicae Applicatae Sinica 2006, 22(3):405-412
-
(2006)
Acta Mathematicae Applicatae Sinica
, vol.22
, Issue.3
, pp. 405-412
-
-
Li, Z.1
Wu, L.2
Zhao, Y.3
Zhang, X.4
-
20
-
-
35048834697
-
Fast hare: a fast heuristic for single individual SNP haplotype reconstruction
-
Panconesi A, Sozio M: Fast hare: a fast heuristic for single individual SNP haplotype reconstruction. Algorithms in Bioinformatics 2004, 266-277
-
(2004)
Algorithms in Bioinformatics
, pp. 266-277
-
-
Panconesi, A.1
Sozio, M.2
-
21
-
-
77954211441
-
Optimal algorithms for haplotype assembly from whole-genome sequence data
-
He D, Choi A, Pipatsrisawat K, Darwiche A, Eskin E: Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics 2010, 26(12):i183
-
(2010)
Bioinformatics
, vol.26
, Issue.12
-
-
He, D.1
Choi, A.2
Pipatsrisawat, K.3
Darwiche, A.4
Eskin, E.5
-
22
-
-
79960878783
-
Inferring viral quasispecies spectra from 454 pyrosequencing reads
-
Astrovskaya I, Tork B, Mangul S, Westbrooks K, Mandoiu I, Balfe P, Zelikovsky A: Inferring viral quasispecies spectra from 454 pyrosequencing reads. BMC Bioinformatics 2011, 12(Suppl 6):S1
-
(2011)
BMC Bioinformatics
, vol.12
-
-
Astrovskaya, I.1
Tork, B.2
Mangul, S.3
Westbrooks, K.4
Mandoiu, I.5
Balfe, P.6
Zelikovsky, A.7
-
23
-
-
41949131367
-
Consensus generation and variant detection by Celera Assembler
-
Denisov G, Walenz B, Halpern AL, Miller J, Axelrod N, Levy S, Sutton G: Consensus generation and variant detection by Celera Assembler. Bioinformatics 2008, 24(8):1035-1040
-
(2008)
Bioinformatics
, vol.24
, Issue.8
, pp. 1035-1040
-
-
Denisov, G.1
Walenz, B.2
Halpern, A.L.3
Miller, J.4
Axelrod, N.5
Levy, S.6
Sutton, G.7
-
24
-
-
79251481867
-
Complete DNA barcode reference library for a country's butterfly fauna reveals high performance for temperate Europe
-
Dinca V, Zakharov E, Hebert P, Vila R: Complete DNA barcode reference library for a country's butterfly fauna reveals high performance for temperate Europe. Proceedings of the Royal Society B: Biological Sciences 2011, 278(1704):347
-
(2011)
Proceedings of the Royal Society B: Biological Sciences
, vol.278
, Issue.1704
, pp. 347
-
-
Dinca, V.1
Zakharov, E.2
Hebert, P.3
Vila, R.4
-
25
-
-
37349001042
-
Genetic differentiation across a latitudinal gradient in two co-occurring butterfly species: revealing population differences in a context of climate change
-
Zakharov E, Hellmann J: Genetic differentiation across a latitudinal gradient in two co-occurring butterfly species: revealing population differences in a context of climate change. Molecular Ecology 2008, 17:189-208
-
(2008)
Molecular Ecology
, vol.17
, pp. 189-208
-
-
Zakharov, E.1
Hellmann, J.2
-
26
-
-
77958184872
-
Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences
-
Lawniczak M, Emrich S, Holloway A, Regier A, Olson M, White B, Redmond S, Fulton L, Appelbaum E, Godfrey J, et al: Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences. Science 2010, 330(6003):512
-
(2010)
Science
, vol.330
, Issue.6003
, pp. 512
-
-
Lawniczak, M.1
Emrich, S.2
Holloway, A.3
Regier, A.4
Olson, M.5
White, B.6
Redmond, S.7
Fulton, L.8
Appelbaum, E.9
Godfrey, J.10
-
27
-
-
46249087524
-
A robust framework for detecting structural variations in a genome
-
Lee S, Cheran E, Brudno M: A robust framework for detecting structural variations in a genome. Bioinformatics 2008, 24(13):i59
-
(2008)
Bioinformatics
, vol.24
, Issue.13
-
-
Lee, S.1
Cheran, E.2
Brudno, M.3
-
28
-
-
84984760488
-
Research suggests importance of haplotypes over SNPs
-
Davidson S: Research suggests importance of haplotypes over SNPs. Nature Biotechnology 2000, 18(11):1134-1135
-
(2000)
Nature Biotechnology
, vol.18
, Issue.11
, pp. 1134-1135
-
-
Davidson, S.1
-
29
-
-
0347526061
-
Human inter-individual DNA sequence variation in candidate genes, drug targets, the importance of haplotypes and pharmacogenomics
-
Hoehe M, Timmermann B, Lehrach H: Human inter-individual DNA sequence variation in candidate genes, drug targets, the importance of haplotypes and pharmacogenomics. Current Pharmaceutical Biotechnology 2003, 4:351-378
-
(2003)
Current Pharmaceutical Biotechnology
, vol.4
, pp. 351-378
-
-
Hoehe, M.1
Timmermann, B.2
Lehrach, H.3
-
30
-
-
2342535027
-
Using the TIGR assembler in shotgun sequencing projects
-
Pop M, Kosack D: Using the TIGR assembler in shotgun sequencing projects. Methods in Molecular Biology 2004, 255:279-294
-
(2004)
Methods in Molecular Biology
, vol.255
, pp. 279-294
-
-
Pop, M.1
Kosack, D.2
-
31
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R: The sequence alignment/map format and SAMtools. Bioinformatics 2009, 25(16):2078
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
32
-
-
38749091304
-
Pyrobayes: an improved base caller for SNP discovery in pyrosequences
-
Quinlan AR, Stewart DA, Stromberg MP, Marth GT: Pyrobayes: an improved base caller for SNP discovery in pyrosequences. Nature Methods 2008, 5(2):179-181
-
(2008)
Nature Methods
, vol.5
, Issue.2
, pp. 179-181
-
-
Quinlan, A.R.1
Stewart, D.A.2
Stromberg, M.P.3
Marth, G.T.4
-
33
-
-
33750305245
-
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/ deletions in EST data from diploid and polyploid species
-
Tang J, Vosman B, Voorrips R, Van Der Linden C, Leunissen J: QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/ deletions in EST data from diploid and polyploid species. BMC Bioinformatics 2006, 7:438
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 438
-
-
Tang, J.1
Vosman, B.2
Voorrips, R.3
Van Der Linden, C.4
Leunissen, J.5
-
34
-
-
0043267974
-
Haplotype blocks and linkage disequilibrium in the human genome
-
Wall J, Pritchard J: Haplotype blocks and linkage disequilibrium in the human genome. Nature Reviews Genetics 2003, 4(8):587-597
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.8
, pp. 587-597
-
-
Wall, J.1
Pritchard, J.2
-
35
-
-
79953810194
-
Set partitioning and chain decomposition
-
Nemhauser G, Trotter L Jr, Nauss R: Set partitioning and chain decomposition. Management Science 1974, 20(11):1413-1423
-
(1974)
Management Science
, vol.20
, Issue.11
, pp. 1413-1423
-
-
Nemhauser, G.1
Trotter, L.2
Nauss, R.3
-
36
-
-
0002719797
-
The Hungarian method for the assignment problem
-
Kuhn H: The Hungarian method for the assignment problem. Naval Research Logistics Quarterly 1955, 2(1-2):83-97
-
(1955)
Naval Research Logistics Quarterly
, vol.2
, Issue.1-2
, pp. 83-97
-
-
Kuhn, H.1
|