The RNA polymerase II Rpb4/7 subcomplex regulates cellular lifespan through an mRNA decay process

Biochemical and Biophysical Research Communications

Volumn 441, Issue 1, 2013, Pages 266-270

  Duan, Ruxin ^a   Rhie, Byung Ho ^a   Ryu, Hong Yeoul ^a   Ahn, Seong Hoon ^a  

^a Hanyang University   (South Korea)

Author keywords

Lifespan; mRNA decay; RNA polymerase II; Rpb4 7

Indexed keywords

MESSENGER RNA; PROTEIN; PROTEIN RPB4; PROTEIN RPB7; RNA POLYMERASE II; UNCLASSIFIED DRUG; PROTEIN BINDING; PROTEIN SUBUNIT; RPB4 PROTEIN, S CEREVISIAE; RPB7 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN;

ARTICLE; CELL AGING; CELL SURVIVAL; CONTROLLED STUDY; CYTOPLASM; GENE EXPRESSION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN DEPLETION; PROTEIN FUNCTION; SACCHAROMYCES CEREVISIAE; TRANSLATION INITIATION; AFFINITY CHROMATOGRAPHY; CELL NUCLEUS; CYTOLOGY; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PROTEIN SUBUNIT; RNA STABILITY;

SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

CELL AGING; CELL NUCLEUS; CHROMATOGRAPHY, AFFINITY; GENE EXPRESSION REGULATION, FUNGAL; PROTEIN BINDING; PROTEIN SUBUNITS; RNA POLYMERASE II; RNA STABILITY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 84887498269     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2013.10.079     Document Type: Article

References (42)

1. R. Parker, and U. Sheth P bodies and the control of mRNA translation and degradation Mol. Cell 25 2007 635 646
2. U. Sheth, and R. Parker Decapping and decay of messenger RNA occur in cytoplasmic processing bodies Science 300 2003 805 808
3. J. Coller, and R. Parker General translational repression by activators of mRNA decapping Cell 122 2005 875 886
4. V. Goler-Baron, M. Selitrennik, O. Barkai, G. Haimovich, R. Lotan, and M. Choder Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes Genes Dev. 22 2008 2022 2027
5. L. Harel-Sharvit, N. Eldad, G. Haimovich, O. Barkai, L. Duek, and M. Choder RNA polymerase II subunits link transcription and mRNA decay to translation Cell 143 2010 552 563
6. P. Preker, and T.H. Jensen Translation by remote control Cell 143 2010 501 502
7. M. Choder Rpb4 and Rpb7: subunits of RNA polymerase II and beyond Trends Biochem. Sci. 29 2004 674 681
8. M. Selitrennik, L. Duek, R. Lotan, and M. Choder Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways Eukaryotic Cell 5 2006 2092 2103
9. A.M. Edwards, C.M. Kane, R.A. Young, and R.D. Kornberg Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro J. Biol. Chem. 266 1991 71 75
10. S.M. Orlicky, P.T. Tran, M.H. Sayre, and A.M. Edwards Dissociable Rpb4-Rpb7 subassembly of RNA polymerase II binds to single-strand nucleic acid and mediates a post-recruitment step in transcription initiation J. Biol. Chem. 276 2001 10097 10102
11. S. Rosenheck, and M. Choder Rpb4, a subunit of RNA polymerase II, enables the enzyme to transcribe at temperature extremes in vitro J. Bacteriol. 180 1998 6187 6192
12. A.L. Mosley, G.O. Hunter, M.E. Sardiu, M. Smolle, J.L. Workman, L. Florens, and M.P. Washburn Quantitative proteomics demonstrates that the RNA polymerase II subunits Rpb4 and Rpb7 dissociate during transcriptional elongation Mol. Cell. Proteomics 12 2013 1530 1538
13. A. Daulny, F. Geng, M. Muratani, J.M. Geisinger, S.E. Salghetti, and W.P. Tansey Modulation of RNA polymerase II subunit composition by ubiquitylation Proc. Natl. Acad. Sci. USA 105 2008 19649 19654
14. A. Ujvari, and D.S. Luse RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit Nat. Struct. Mol. Biol. 13 2006 49 54
15. N. Sonenberg, and A.G. Hinnebusch Regulation of translation initiation in eukaryotes: mechanisms and biological targets Cell 136 2009 731 745
16. R. Lotan, V.G. Bar-On, L. Harel-Sharvit, L. Duek, D. Melamed, and M. Choder The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs Genes Dev. 19 2005 3004 3016
17. R. Lotan, V. Goler-Baron, L. Duek, G. Haimovich, and M. Choder The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms J. Cell Biol. 178 2007 1133 1143
18. R.K. Mortimer, and J.R. Johnston Life span of individual yeast cells Nature 183 1959 1751 1752
19. K.J. Bitterman, O. Medvedik, and D.A. Sinclair Longevity regulation in Saccharomyces cerevisiae: linking metabolism, genome stability, and heterochromatin Microbiol. Mol. Biol. Rev. 67 2003 376 399 table of contents
20. K.A. Steinkraus, M. Kaeberlein, and B.K. Kennedy Replicative aging in yeast: the means to the end Annu. Rev. Cell Dev. Biol. 24 2008 29 54
21. M. Kaeberlein, K.T. Kirkland, S. Fields, and B.K. Kennedy Genes determining yeast replicative life span in a long-lived genetic background Mech. Ageing Dev. 126 2005 491 504
22. W. Dang, K.K. Steffen, R. Perry, J.A. Dorsey, F.B. Johnson, A. Shilatifard, M. Kaeberlein, B.K. Kennedy, and S.L. Berger Histone H4 lysine 16 acetylation regulates cellular lifespan Nature 459 2009 802 807
23. J. Feser, D. Truong, C. Das, J.J. Carson, J. Kieft, T. Harkness, and J.K. Tyler Elevated histone expression promotes life span extension Mol. Cell 39 2010 724 735
24. K.K. Steffen, V.L. MacKay, E.O. Kerr, M. Tsuchiya, D. Hu, L.A. Fox, N. Dang, E.D. Johnston, J.A. Oakes, B.N. Tchao, D.N. Pak, S. Fields, B.K. Kennedy, and M. Kaeberlein Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4 Cell 133 2008 292 302
25. A.R. Pont, N. Sadri, S.J. Hsiao, S. Smith, and R.J. Schneider MRNA decay factor AUF1 maintains normal aging, telomere maintenance, and suppression of senescence by activation of telomerase transcription Mol. Cell 47 2012 5 15
26. G. Rigaut, A. Shevchenko, B. Rutz, M. Wilm, M. Mann, and B. Seraphin A generic protein purification method for protein complex characterization and proteome exploration Nat. Biotechnol. 17 1999 1030 1032
27. X. Zhang, L. Shi, S. Shu, Y. Wang, K. Zhao, N. Xu, S. Liu, and P. Roepstorff An improved method of sample preparation on AnchorChip targets for MALDI-MS and MS/MS and its application in the liver proteome project Proteomics 7 2007 2340 2349
28. G. Yiu, A. McCord, A. Wise, R. Jindal, J. Hardee, A. Kuo, M.Y. Shimogawa, L. Cahoon, M. Wu, J. Kloke, J. Hardin, and L.L. Mays Hoopes Pathways change in expression during replicative aging in Saccharomyces cerevisiae J. Gerontol. A., Biol. Sci. Med. Sci. 63 2008 21 34
29. N.A. Woychik, and R.A. Young RNA polymerase II subunit RPB4 is essential for high-temperature and low-temperature yeast-cell growth Mol. Cell. Biol. 9 1989 2854 2859
30. P.A. Kolodziej, N. Woychik, S.M. Liao, and R.A. Young RNA polymerase II subunit composition, stoichiometry, and phosphorylation Mol. Cell. Biol. 10 1990 1915 1920
31. M. Harreman, M. Taschner, S. Sigurdsson, R. Anindya, J. Reid, B. Somesh, S.E. Kong, C.A. Banks, R.C. Conaway, J.W. Conaway, and J.Q. Svejstrup Distinct ubiquitin ligases act sequentially for RNA polymerase II polyubiquitylation Proc. Natl. Acad. Sci. USA 106 2009 20705 20710
32. R.G. Gardner, Z.W. Nelson, and D.E. Gottschling Degradation-mediated protein quality control in the nucleus Cell 120 2005 803 815
33. A.L. Mosley, S.G. Pattenden, M. Carey, S. Venkatesh, J.M. Gilmore, L. Florens, J.L. Workman, and M.P. Washburn Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation Mol. Cell 34 2009 168 178
34. V. Tudisca, V. Recouvreux, S. Moreno, E. Boy-Marcotte, M. Jacquet, and P. Portela Differential localization to cytoplasm, nucleus or P-bodies of yeast PKA subunits under different growth conditions Eur. J. Cell Biol. 89 2010 339 348
35. B.R. Cairns, Y.J. Kim, M.H. Sayre, B.C. Laurent, and R.D. Kornberg A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast Proc. Natl. Acad. Sci. USA 91 1994 1950 1954
36. A. Roguev, D. Schaft, A. Shevchenko, W.W. Pijnappel, M. Wilm, R. Aasland, and A.F. Stewart The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4 EMBO J. 20 2001 7137 7148
37. D.W. Kwon, and S.H. Ahn Role of yeast JmjC-domain containing histone demethylases in actively transcribed regions Biochem. Biophys. Res. Commun. 410 2011 614 619
38. W.J. Feaver, N.L. Henry, Z. Wang, X. Wu, J.Q. Svejstrup, D.A. Bushnell, E.C. Friedberg, and R.D. Kornberg Genes for Tfb2, Tfb3, and Tfb4 subunits of yeast transcription/repair factor IIH. Homology to human cyclin-dependent kinase activating kinase and IIH subunits J. Biol. Chem. 272 1997 19319 19327
39. L. Valasek, J. Hasek, H. Trachsel, E.M. Imre, and H. Ruis The Saccharomyces cerevisiae HCR1 gene encoding a homologue of the p35 subunit of human translation initiation factor 3 (eIF3) is a high copy suppressor of a temperature-sensitive mutation in the Rpg1p subunit of yeast eIF3 J. Biol. Chem. 274 1999 27567 27572
40. R.A. Young RNA polymerase II Annu. Rev. Biochem. 60 1991 689 715
41. S. Li, and M.J. Smerdon Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae EMBO J. 21 2002 5921 5929
42. N. Sharma, S. Marguerat, S. Mehta, S. Watt, and J. Bahler The fission yeast Rpb4 subunit of RNA polymerase II plays a specialized role in cell separation Mol. Genet. Genomics 276 2006 545 554