-
1
-
-
74249084440
-
MiR-15a and miR-16-1 in cancer: Discovery, function and future perspectives
-
Aqeilan RI, Calin GA, Croce CM. 2010. miR-15a and miR-16-1 in cancer: Discovery, function and future perspectives. Cell Death Differ 17: 215-220.
-
(2010)
Cell Death Differ
, vol.17
, pp. 215-220
-
-
Aqeilan, R.I.1
Calin, G.A.2
Croce, C.M.3
-
2
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP. 2009. MicroRNAs: Target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
3
-
-
81355123438
-
Evolution of microRNA diversity and regulation in animals
-
Berezikov E. 2011. Evolution of microRNA diversity and regulation in animals. Nat Rev Genet 12: 846-860.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 846-860
-
-
Berezikov, E.1
-
4
-
-
34047108602
-
The delayed rise of present-day mammals
-
Bininda-Emonds ORP, Cardillo M, Jones KE, MacPhee RDE, Beck RMD, Grenyer R, Price SA, Vos RA, Gittleman JL, Purvis A. 2007. The delayed rise of present-day mammals. Nature 446: 507-512.
-
(2007)
Nature
, vol.446
, pp. 507-512
-
-
Orp, B.1
Cardillo, M.2
Jones, K.E.3
Rde, M.4
Rmd, B.5
Grenyer, R.6
Price, S.A.7
Vos, R.A.8
Gittleman, J.L.9
Purvis, A.10
-
5
-
-
0015390280
-
The primary structure of cytochrome c from the rust fungus Ustilago sphaerogena
-
Bitar KG, Vinogradov SN, Nolan C, Weiss LJ, Margoliash E. 1972. The primary structure of cytochrome c from the rust fungus Ustilago sphaerogena. Biochem J 129: 561-569.
-
(1972)
Biochem J
, vol.129
, pp. 561-569
-
-
Bitar, K.G.1
Vinogradov, S.N.2
Nolan, C.3
Weiss, L.J.4
Margoliash, E.5
-
6
-
-
33644800656
-
Biological profiling of gene groups utilizing Gene Ontology
-
Bluthgen N, Brand K, Cajavec B, Swat M, Herzel H, Beule D. 2005. Biological profiling of gene groups utilizing Gene Ontology. Genome Inform 16: 106-115.
-
(2005)
Genome Inform
, vol.16
, pp. 106-115
-
-
Bluthgen, N.1
Brand, K.2
Cajavec, B.3
Swat, M.4
Herzel, H.5
Beule, D.6
-
8
-
-
34250682267
-
Deep conservation of microRNA-target relationships and 39UTR motifs in vertebrates, flies, and nematodes
-
Chen K, Rajewsky N. 2006a. Deep conservation of microRNA-target relationships and 39UTR motifs in vertebrates, flies, and nematodes. Cold Spring Harb Symp Quant Biol 71: 149-156.
-
(2006)
Cold Spring Harb Symp Quant Biol
, vol.71
, pp. 149-156
-
-
Chen, K.1
Rajewsky, N.2
-
9
-
-
33751520430
-
Natural selection on human microRNA binding sites inferred from SNP data
-
Chen K, Rajewsky N. 2006b. Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 38: 1452-1456.
-
(2006)
Nat Genet
, vol.38
, pp. 1452-1456
-
-
Chen, K.1
Rajewsky, N.2
-
10
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi SW, Zang JB, Mele A, Darnell RB. 2009. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460: 479-486.
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
11
-
-
77649193420
-
Ancient animal microRNAs and the evolution of tissue identity
-
Christodoulou F, Raible F, Tomer R, Simakov O, Trachana K, Klaus S, Snyman H, Hannon GJ, Bork P, Arendt D. 2010. Ancient animal microRNAs and the evolution of tissue identity. Nature 463: 1084-1088.
-
(2010)
Nature
, vol.463
, pp. 1084-1088
-
-
Christodoulou, F.1
Raible, F.2
Tomer, R.3
Simakov, O.4
Trachana, K.5
Klaus, S.6
Snyman, H.7
Hannon, G.J.8
Bork, P.9
Arendt, D.10
-
12
-
-
29144505309
-
The widespread impact of mammalian microRNAs on mRNA repression and evolution
-
Farh KK-H, Grimson A, Jan C, Lewis BP, Johnston WK, Lim LP, Burge CB, Bartel DP. 2005. The widespread impact of mammalian microRNAs on mRNA repression and evolution. Science 310: 1817-1821.
-
(2005)
Science
, vol.310
, pp. 1817-1821
-
-
Kk-H, F.1
Grimson, A.2
Jan, C.3
Lewis, B.P.4
Johnston, W.K.5
Lim, L.P.6
Burge, C.B.7
Bartel, D.P.8
-
13
-
-
0017125067
-
The molecular evolution of cytochrome c in eukaryotes
-
Fitch WM. 1976. The molecular evolution of cytochrome c in eukaryotes. J Mol Evol 8: 13-40.
-
(1976)
J Mol Evol
, vol.8
, pp. 13-40
-
-
Fitch, W.M.1
-
14
-
-
54149095553
-
Biological principles of microRNA-mediated regulation: Shared themes amid diversity
-
Flynt AS, Lai EC. 2008. Biological principles of microRNA-mediated regulation: Shared themes amid diversity. Nat Rev Genet 9: 831-842.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 831-842
-
-
Flynt, A.S.1
Lai, E.C.2
-
16
-
-
78651320424
-
The UCSC Genome Browser Database: Update 2011
-
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, Cline MS, Goldman M, Barber GP, Clawson H, Coelho A et al. 2011.The UCSC Genome Browser Database: Update 2011. Nucleic Acids Res 39: D876-D882.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
Cline, M.S.6
Goldman, M.7
Barber, G.P.8
Clawson, H.9
Coelho, A.10
-
17
-
-
0033360816
-
The genomic record of Humankind's evolutionary roots
-
Goodman M. 1999. The genomic record of Humankind's evolutionary roots. Am J Hum Genet 64: 31-39.
-
(1999)
Am J Hum Genet
, vol.64
, pp. 31-39
-
-
Goodman, M.1
-
19
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
Grimson A, Farh KK-H, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP. 2007. MicroRNA targeting specificity in mammals: Determinants beyond seed pairing. Mol Cell 27: 91-105.
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Kk-H, F.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
20
-
-
27344456287
-
MicroRNA target predictions across seven Drosophila species and comparison to mammalian targets
-
Grun D, Wang Y-L, Langenberger D, Gunsalus KC, Rajewsky N. 2005. microRNA target predictions across seven Drosophila species and comparison to mammalian targets. PLoS Comput Biol 1: e13.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Grun, D.1
Wang, Y.-L.2
Langenberger, D.3
Gunsalus, K.C.4
Rajewsky, N.5
-
21
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp A-C, Munschauer M, et al. 2010. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Jungkamp, A.-C.8
Munschauer, M.9
-
22
-
-
3042767202
-
MicroRNAs: Small RNAs with a big role in gene regulation
-
He L, Hannon GJ. 2004. MicroRNAs: Small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
23
-
-
20444467290
-
A microRNA polycistron as a potential human oncogene
-
He L, Thomson JM, Hemann MT, Hernando-Monge E, Mu D, Goodson S, Powers S, Cordon-Cardo C, Lowe SW, Hannon GJ, et al. 2005. A microRNA polycistron as a potential human oncogene. Nature 435: 828-833.
-
(2005)
Nature
, vol.435
, pp. 828-833
-
-
He, L.1
Thomson, J.M.2
Hemann, M.T.3
Hernando-Monge, E.4
Mu, D.5
Goodson, S.6
Powers, S.7
Cordon-Cardo, C.8
Lowe, S.W.9
Hannon, G.J.10
-
24
-
-
33644772270
-
The Students of Bioinformatics Computer Labs 2004 and 2005. 2006 the expansion of the metazoan microRNA repertoire
-
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF, The Students of Bioinformatics Computer Labs 2004 and 2005. 2006. The expansion of the metazoan microRNA repertoire. BMC Genomics 7: 25-25.
-
BMC Genomics
, vol.7
, pp. 25-25
-
-
Hertel, J.1
Lindemeyer, M.2
Missal, K.3
Fried, C.4
Tanzer, A.5
Flamm, C.6
Hofacker, I.L.7
Stadler, P.F.8
-
25
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
26
-
-
34848927455
-
The conserved microRNA miR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila
-
Karres JS, Hilgers V, Carrera I, Treisman J, Cohen SM. 2007. The conserved microRNA miR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila. Cell 131: 136-145.
-
(2007)
Cell
, vol.131
, pp. 136-145
-
-
Karres, J.S.1
Hilgers, V.2
Carrera, I.3
Treisman, J.4
Cohen, S.M.5
-
27
-
-
0032580152
-
A molecular timescale for vertebrate evolution
-
Kumar S, Hedges SB. 1998. A molecular timescale for vertebrate evolution. Nature 392: 917-920.
-
(1998)
Nature
, vol.392
, pp. 917-920
-
-
Kumar, S.1
Hedges, S.B.2
-
28
-
-
79551647673
-
Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs
-
Leung AKL, Young AG, Bhutkar A, Zheng GX, Bosson AD, Nielsen CB, Sharp PA. 2011. Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs. Nat Struct Mol Biol 18: 237-244.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 237-244
-
-
Akl, L.1
Young, A.G.2
Bhutkar, A.3
Zheng, G.X.4
Bosson, A.D.5
Nielsen, C.B.6
Pay, S.7
-
29
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-RhoadesMW, Bartel DP, Burge CB. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
30
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, Castle J, BartelDP, Linsley PS, Johnson JM. 2005. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
31
-
-
39749083331
-
The birth and death of microRNA genes in Drosophila
-
Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu C-I. 2008. The birth and death of microRNA genes in Drosophila. Nat Genet 40: 351-355.
-
(2008)
Nat Genet
, vol.40
, pp. 351-355
-
-
Lu, J.1
Shen, Y.2
Wu, Q.3
Kumar, S.4
He, B.5
Shi, S.6
Carthew, R.W.7
Wang, S.M.8
Wu, C.-I.9
-
32
-
-
78649941638
-
The miR-17-92 microRNA cluster regulates multiple components of the TGF-b pathway in neuroblastoma
-
Mestdagh P, BostromA-K, Impens F, Fredlund E, Van Peer G, De Antonellis P, von Stedingk K, Ghesquiere B, Schulte S, Dews M, et al. 2010. The miR-17-92 microRNA cluster regulates multiple components of the TGF-b pathway in neuroblastoma. Mol Cell 40: 762-773.
-
(2010)
Mol Cell
, vol.40
, pp. 762-773
-
-
Mestdagh, P.1
Bostroma-K Impens, F.2
Fredlund, E.3
Van Peer, G.4
De Antonellis, P.5
Von Stedingk, K.6
Hesquiere, B.7
Schulte, S.8
Dews, M.9
-
33
-
-
77954382780
-
Mir-17-92, a cluster of miRNAs in the midst of the cancer network
-
Olive V, Jiang I, He L. 2010. mir-17-92, a cluster of miRNAs in the midst of the cancer network. Int J Biochem Cell Biol 42: 1348-1354.
-
(2010)
Int J Biochem Cell Biol
, vol.42
, pp. 1348-1354
-
-
Olive, V.1
Jiang, I.2
He, L.3
-
34
-
-
33745248430
-
MicroRNA target predictions in animals
-
Rajewsky N. 2006. microRNA target predictions in animals. Nat Genet (Suppl) 38: S8-S13.
-
(2006)
Nat Genet (Suppl)
, vol.38
-
-
Rajewsky, N.1
-
35
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. 2008.Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
36
-
-
31044444975
-
TarBase: A comprehensive database of experimentally supported animal microRNA targets
-
Sethupathy P, Corda B, Hatzigeorgiou AG. 2006. TarBase: A comprehensive database of experimentally supported animal microRNA targets. RNA 12: 192-197.
-
(2006)
RNA
, vol.12
, pp. 192-197
-
-
Sethupathy, P.1
Corda, B.2
Hatzigeorgiou, A.G.3
-
37
-
-
33644499134
-
Cell-type-specific signatures of microRNAs on target mRNA expression
-
Sood P, Krek A, Zavolan M, Macino G, Rajewsky N. 2006. Cell-type-specific signatures of microRNAs on target mRNA expression. Proc Natl Acad Sci 103: 2746-2751.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 2746-2751
-
-
Sood, P.1
Krek, A.2
Zavolan, M.3
Macino, G.4
Rajewsky, N.5
-
39
-
-
28944439309
-
Animal microRNAs confer robustness to gene expression and have a significant impact on 39UTR evolution
-
Stark A, Brennecke J, Bushati N, Russell RB, Cohen SM. 2005. Animal microRNAs confer robustness to gene expression and have a significant impact on 39UTR evolution. Cell 123: 1133-1146.
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
40
-
-
77955622855
-
Adverse interactions between micro-RNAs and target genes from different species
-
Tang T, Kumar S, Shen Y, Lu J,Wu M-L, Shi S, LiW-H,Wu C-I. 2010. Adverse interactions between micro-RNAs and target genes from different species. Proc Natl Acad Sci 107: 12935-12940.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 12935-12940
-
-
Tang, T.1
Kumar, S.2
Shen, Y.3
Lu Jwu, M.-L.4
Shi, S.5
Liw-Hwu, C.-I.6
-
41
-
-
66049153398
-
Evolution under canalization and the dual roles of microRNAs-A hypothesis
-
Wu C-I, Shen Y, Tang T. 2009. Evolution under canalization and the dual roles of microRNAs-a hypothesis. Genome Res 19: 734-743.
-
(2009)
Genome Res
, vol.19
, pp. 734-743
-
-
Wu, C.-I.1
Shen, Y.2
Tang, T.3
-
42
-
-
34547803197
-
PAML 4: Phylogenetic Analysis by Maximum Likelihood
-
Yang Z. 2007. PAML 4: Phylogenetic Analysis by Maximum Likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
43
-
-
76349122201
-
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
-
Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW. 2010. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nat Struct Mol Biol 17: 173-179.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 173-179
-
-
Zisoulis, D.G.1
Lovci, M.T.2
Wilbert, M.L.3
Hutt, K.R.4
Liang, T.Y.5
Pasquinelli, A.E.6
Yeo, G.W.7
|