-
1
-
-
74949143594
-
Final version of 2009 AJCC melanoma staging and classification
-
Balch, C. M., J. E. Gershenwald, S. J. Soong, J. F. Thompson, M. B. Atkins, D. R. Byrd, A. C. Buzaid, A. J. Cochran, D. G. Coit, S. Ding, et al. 2009. Final version of 2009 AJCC melanoma staging and classification. J. Clin. Oncol. 27:6199-6206.
-
(2009)
J. Clin. Oncol.
, vol.27
, pp. 6199-6206
-
-
Balch, C.M.1
Gershenwald, J.E.2
Soong, S.J.3
Thompson, J.F.4
Atkins, M.B.5
Byrd, D.R.6
Buzaid, A.C.7
Cochran, A.J.8
Coit, D.G.9
Ding, S.10
-
2
-
-
44349117909
-
Adoptive cell therapy for patients with melanoma, using tumor-infiltrating lymphocytes genetically engineered to secrete interleukin-2
-
Heemskerk, B., K. Liu, M. E. Dudley, L. A. Johnson, A. Kaiser, S. Downey, Z. Zheng, T. E. Shelton, K. Matsuda, P. F. Robbins, et al. 2008. Adoptive cell therapy for patients with melanoma, using tumor-infiltrating lymphocytes genetically engineered to secrete interleukin-2. Hum. Gene Ther. 19:496-510.
-
(2008)
Hum. Gene Ther.
, vol.19
, pp. 496-510
-
-
Heemskerk, B.1
Liu, K.2
Dudley, M.E.3
Johnson, L.A.4
Kaiser, A.5
Downey, S.6
Zheng, Z.7
Shelton, T.E.8
Matsuda, K.9
Robbins, P.F.10
-
3
-
-
77954801079
-
Improved survival with ipilimumab in patients with metastatic melanoma
-
Hodi, F. S., S. J. O'Day, D. F. McDermott, R. W. Weber, J. A. Sosman, J. B. Haanen, R. Gonzalez, C. Robert, D. Schadendorf, J. C. Hassel, et al. 2010. Improved survival with ipilimumab in patients with metastatic melanoma. N. Engl. J. Med. 363:711-723.
-
(2010)
N. Engl. J. Med.
, vol.363
, pp. 711-723
-
-
Hodi, F.S.1
O'Day, S.J.2
McDermott, D.F.3
Weber, R.W.4
Sosman, J.A.5
Haanen, J.B.6
Gonzalez, R.7
Robert, C.8
Schadendorf, D.9
Hassel, J.C.10
-
4
-
-
84862859820
-
Safety, activity, and immune correlates of anti-PD-1 antibody in cancer
-
Topalian, S. L., F. S. Hodi, J. R. Brahmer, S. N. Gettinger, D. C. Smith, D. F. McDermott, J. D. Powderly, R. D. Carvajal, J. A. Sosman, M. B. Atkins, et al. 2012. Safety, activity, and immune correlates of anti-PD-1 antibody in cancer. N. Engl. J. Med. 366:2443-2454.
-
(2012)
N. Engl. J. Med.
, vol.366
, pp. 2443-2454
-
-
Topalian, S.L.1
Hodi, F.S.2
Brahmer, J.R.3
Gettinger, S.N.4
Smith, D.C.5
McDermott, D.F.6
Powderly, J.D.7
Carvajal, R.D.8
Sosman, J.A.9
Atkins, M.B.10
-
5
-
-
84862903106
-
Safety and activity of anti-PD-L1 antibody in patients with advanced cancer
-
Brahmer, J. R., S. S. Tykodi, L. Q. Chow, W. J. Hwu, S. L. Topalian, P. Hwu, C. G. Drake, L. H. Camacho, J. Kauh, K. Odunsi, et al. 2012. Safety and activity of anti-PD-L1 antibody in patients with advanced cancer. N. Engl. J. Med. 366:2455-2465.
-
(2012)
N. Engl. J. Med.
, vol.366
, pp. 2455-2465
-
-
Brahmer, J.R.1
Tykodi, S.S.2
Chow, L.Q.3
Hwu, W.J.4
Topalian, S.L.5
Hwu, P.6
Drake, C.G.7
Camacho, L.H.8
Kauh, J.9
Odunsi, K.10
-
6
-
-
63449124514
-
Antiprogrammed death-1 synergizes with granulocyte macrophage colony-stimulating factor-secreting tumor cell immunotherapy providing therapeutic benefit to mice with established tumors
-
Li, B., M. Van Roey, C. Wang, T. H. Chen, A. Korman, and K. Jooss. 2009. Antiprogrammed death-1 synergizes with granulocyte macrophage colony-stimulating factor-secreting tumor cell immunotherapy providing therapeutic benefit to mice with established tumors. Clin. Cancer Res. 15:1623-1634.
-
(2009)
Clin. Cancer Res.
, vol.15
, pp. 1623-1634
-
-
Li, B.1
Van Roey, M.2
Wang, C.3
Chen, T.H.4
Korman, A.5
Jooss, K.6
-
7
-
-
0032544067
-
CTLA-4 blockade synergizes with tumor-derived granulocyte-macrophage colony-stimulating factor for treatment of an experimental mammary carcinoma
-
Hurwitz, A. A., T. F. Yu, D. R. Leach, and J. P. Allison. 1998. CTLA-4 blockade synergizes with tumor-derived granulocyte-macrophage colony-stimulating factor for treatment of an experimental mammary carcinoma. Proc. Natl. Acad. Sci. USA 95:10067-10071.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 10067-10071
-
-
Hurwitz, A.A.1
Yu, T.F.2
Leach, D.R.3
Allison, J.P.4
-
8
-
-
79957831345
-
Gp100 peptide vaccine and interleukin-2 in patients with advanced melanoma
-
Schwartzentruber, D. J., D. H. Lawson, J. M. Richards, R. M. Conry, D. M. Miller, J. Treisman, F. Gailani, L. Riley, K. Conlon, B. Pockaj, et al. 2011. gp100 peptide vaccine and interleukin-2 in patients with advanced melanoma. N. Engl. J. Med. 364:2119-2127.
-
(2011)
N. Engl. J. Med.
, vol.364
, pp. 2119-2127
-
-
Schwartzentruber, D.J.1
Lawson, D.H.2
Richards, J.M.3
Conry, R.M.4
Miller, D.M.5
Treisman, J.6
Gailani, F.7
Riley, L.8
Conlon, K.9
Pockaj, B.10
-
9
-
-
0029955865
-
Human melanoma antigens recognized by T lymphocytes
-
Kawakami, Y., P. F. Robbins, and S. A. Rosenberg. 1996. Human melanoma antigens recognized by T lymphocytes. Keio J. Med. 45:100-108.
-
(1996)
Keio J. Med.
, vol.45
, pp. 100-108
-
-
Kawakami, Y.1
Robbins, P.F.2
Rosenberg, S.A.3
-
10
-
-
18344362786
-
A phase I study of nonmyeloablative chemotherapy and adoptive transfer of autologous tumor antigen-specific T lymphocytes in patients with metastatic melanoma
-
Dudley, M. E., J. R. Wunderlich, J. C. Yang, P. Hwu, D. J. Schwartzentruber, S. L. Topalian, R. M. Sherry, F. M. Marincola, S. F. Leitman, C. A. Seipp, et al. 2002. A phase I study of nonmyeloablative chemotherapy and adoptive transfer of autologous tumor antigen-specific T lymphocytes in patients with metastatic melanoma. J. Immunother. 25:243-251.
-
(2002)
J. Immunother.
, vol.25
, pp. 243-251
-
-
Dudley, M.E.1
Wunderlich, J.R.2
Yang, J.C.3
Hwu, P.4
Schwartzentruber, D.J.5
Topalian, S.L.6
Sherry, R.M.7
Marincola, F.M.8
Leitman, S.F.9
Seipp, C.A.10
-
11
-
-
14844341146
-
Recognition of multiple epitopes in the human melanoma antigen gp100 by tumor-infiltrating T lymphocytes associated with in vivo tumor regression
-
Kawakami, Y., S. Eliyahu, C. Jennings, K. Sakaguchi, X. Kang, S. Southwood, P. F. Robbins, A. Sette, E. Appella, and S. A. Rosenberg. 1995. Recognition of multiple epitopes in the human melanoma antigen gp100 by tumor-infiltrating T lymphocytes associated with in vivo tumor regression. J. Immunol. 154:3961-3968.
-
(1995)
J. Immunol.
, vol.154
, pp. 3961-3968
-
-
Kawakami, Y.1
Eliyahu, S.2
Jennings, C.3
Sakaguchi, K.4
Kang, X.5
Southwood, S.6
Robbins, P.F.7
Sette, A.8
Appella, E.9
Rosenberg, S.A.10
-
12
-
-
0031782910
-
The role of CD4+ T cell responses in antitumor immunity
-
Pardoll, D. M., and S. L. Topalian. 1998. The role of CD4+ T cell responses in antitumor immunity. Curr. Opin. Immunol. 10:588-594.
-
(1998)
Curr. Opin. Immunol.
, vol.10
, pp. 588-594
-
-
Pardoll, D.M.1
Topalian, S.L.2
-
13
-
-
0030802482
-
Isolation of novel HLA-DR restricted potential tumor-associated antigens from the melanoma cell line FM3
-
Halder, T., G. Pawelec, A. F. Kirkin, J. Zeuthen, H. E. Meyer, L. Kun, and H. Kalbacher. 1997. Isolation of novel HLA-DR restricted potential tumor-associated antigens from the melanoma cell line FM3. Cancer Res. 57:3238-3244.
-
(1997)
Cancer Res.
, vol.57
, pp. 3238-3244
-
-
Halder, T.1
Pawelec, G.2
Kirkin, A.F.3
Zeuthen, J.4
Meyer, H.E.5
Kun, L.6
Kalbacher, H.7
-
14
-
-
0034176020
-
Identification of a MHC class II-restricted human gp100 epitope using DR4-IE transgenic mice
-
Touloukian, C. E., W. W. Leitner, S. L. Topalian, Y. F. Li, P. F. Robbins, S. A. Rosenberg, and N. P. Restifo. 2000. Identification of a MHC class II-restricted human gp100 epitope using DR4-IE transgenic mice. J. Immunol. 164:3535-3542.
-
(2000)
J. Immunol.
, vol.164
, pp. 3535-3542
-
-
Touloukian, C.E.1
Leitner, W.W.2
Topalian, S.L.3
Li, Y.F.4
Robbins, P.F.5
Rosenberg, S.A.6
Restifo, N.P.7
-
15
-
-
0035976313
-
Gp100/pmel17 and tyrosinase encode multiple epitopes recognized by Th1-type CD4+T cells
-
Kierstead, L. S., E. Ranieri, W. Olson, V. Brusic, J. Sidney, A. Sette, Y. L. Kasamon, C. L. Slingluff, Jr., J. M. Kirkwood, and W. J. Storkus. 2001. gp100/pmel17 and tyrosinase encode multiple epitopes recognized by Th1-type CD4+T cells. Br. J. Cancer 85:1738-1745.
-
(2001)
Br. J. Cancer
, vol.85
, pp. 1738-1745
-
-
Kierstead, L.S.1
Ranieri, E.2
Olson, W.3
Brusic, V.4
Sidney, J.5
Sette, A.6
Kasamon, Y.L.7
Slingluff, C.L.8
Kirkwood Jr., J.M.9
Storkus, W.J.10
-
16
-
-
10744222813
-
Immunization of patients with metastatic melanoma using both class I- and class II-restricted peptides from melanoma-associated antigens
-
Phan, G. Q., C. E. Touloukian, J. C. Yang, N. P. Restifo, R. M. Sherry, P. Hwu, S. L. Topalian, D. J. Schwartzentruber, C. A. Seipp, L. J. Freezer, et al. 2003. Immunization of patients with metastatic melanoma using both class I- and class II-restricted peptides from melanoma-associated antigens. J. Immunother. 26:349-356.
-
(2003)
J. Immunother.
, vol.26
, pp. 349-356
-
-
Phan, G.Q.1
Touloukian, C.E.2
Yang, J.C.3
Restifo, N.P.4
Sherry, R.M.5
Hwu, P.6
Topalian, S.L.7
Schwartzentruber, D.J.8
Seipp, C.A.9
Freezer, L.J.10
-
18
-
-
0029837404
-
Immunization against epitopes in the human melanoma antigen gp100 following patient immunization with synthetic peptides
-
Salgaller, M. L., F. M. Marincola, J. N. Cormier, and S. A. Rosenberg. 1996. Immunization against epitopes in the human melanoma antigen gp100 following patient immunization with synthetic peptides. Cancer Res. 56:4749-4757.
-
(1996)
Cancer Res.
, vol.56
, pp. 4749-4757
-
-
Salgaller, M.L.1
Marincola, F.M.2
Cormier, J.N.3
Rosenberg, S.A.4
-
19
-
-
0033082514
-
Changes in the fine specificity of gp100 (209-217)-reactive T cells in patients following vaccination with a peptide modified at an HLA-A2.1 anchor residue
-
Clay, T. M., M. C. Custer, M. D. McKee, M. Parkhurst, P. F. Robbins, K. Kerstann, J. Wunderlich, S. A. Rosenberg, and M. I. Nishimura. 1999. Changes in the fine specificity of gp100 (209-217)-reactive T cells in patients following vaccination with a peptide modified at an HLA-A2.1 anchor residue. J. Immunol. 162:1749-1755.
-
(1999)
J. Immunol.
, vol.162
, pp. 1749-1755
-
-
Clay, T.M.1
Custer, M.C.2
McKee, M.D.3
Parkhurst, M.4
Robbins, P.F.5
Kerstann, K.6
Wunderlich, J.7
Rosenberg, S.A.8
Nishimura, M.I.9
-
20
-
-
0032993029
-
Antitumor immunization with a minimal peptide epitope (G9-209-2M) leads to a functionally heterogeneous CTL response
-
Dudley, M. E., M. I. Nishimura, A. K. Holt, and S. A. Rosenberg. 1999. Antitumor immunization with a minimal peptide epitope (G9-209-2M) leads to a functionally heterogeneous CTL response. J. Immunother. 22:288-298.
-
(1999)
J. Immunother.
, vol.22
, pp. 288-298
-
-
Dudley, M.E.1
Nishimura, M.I.2
Holt, A.K.3
Rosenberg, S.A.4
-
21
-
-
70350244535
-
Design of agonistic altered peptides for the robust induction of CTL directed towards H-2Db in complex with the melanoma-associated epitope gp100
-
Van Stipdonk, M. J., D. Badia-Martinez, M. Sluijter, R. Offringa, T. Van Hall, and A. Achour. 2009. Design of agonistic altered peptides for the robust induction of CTL directed towards H-2Db in complex with the melanoma-associated epitope gp100. Cancer Res. 69:7784-7792.
-
(2009)
Cancer Res.
, vol.69
, pp. 7784-7792
-
-
Van Stipdonk, M.J.1
Badia-Martinez, D.2
Sluijter, M.3
Offringa, R.4
Van Hall, T.5
Achour, A.6
-
23
-
-
0027296020
-
HLA DR4w4-binding motifs illustrate the biochemical basis of degeneracy and specificity in peptide-DR interactions
-
Sette, A., J. Sidney, C. Oseroff, M. F. Del Guercio, S. Southwood, T. Arrhenius, M. F. Powell, S. M. Colón, F. C. Gaeta, and H. M. Grey. 1993. HLA DR4w4-binding motifs illustrate the biochemical basis of degeneracy and specificity in peptide-DR interactions. J. Immunol. 151:3163-3170.
-
(1993)
J. Immunol.
, vol.151
, pp. 3163-3170
-
-
Sette, A.1
Sidney, J.2
Oseroff, C.3
Del Guercio, M.F.4
Southwood, S.5
Arrhenius, T.6
Powell, M.F.7
Colón, S.M.8
Gaeta, F.C.9
Grey, H.M.10
-
24
-
-
0027185153
-
Promiscuous and allele-specific anchors in HLA-DR-binding peptides
-
Hammer, J., P. Valsasnini, K. Tolba, D. Bolin, J. Higelin, B. Takacs, and F. Sinigaglia. 1993. Promiscuous and allele-specific anchors in HLA-DR-binding peptides. Cell 74:197-203.
-
(1993)
Cell
, vol.74
, pp. 197-203
-
-
Hammer, J.1
Valsasnini, P.2
Tolba, K.3
Bolin, D.4
Higelin, J.5
Takacs, B.6
Sinigaglia, F.7
-
25
-
-
0028296719
-
High-affinity binding of short peptides to major histocompatibility complex class II molecules by anchor combinations
-
Hammer, J., C. Belunis, D. Bolin, J. Papadopoulos, R. Walsky, J. Higelin, W. Danho, F. Sinigaglia, and Z. A. Nagy. 1994. High-affinity binding of short peptides to major histocompatibility complex class II molecules by anchor combinations. Proc. Natl. Acad. Sci. USA 91:4456-4460.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 4456-4460
-
-
Hammer, J.1
Belunis, C.2
Bolin, D.3
Papadopoulos, J.4
Walsky, R.5
Higelin, J.6
Danho, W.7
Sinigaglia, F.8
Nagy, Z.A.9
-
26
-
-
67749145750
-
Identification of tumor-associated, MHC class II-restricted phosphopeptides as targets for immunotherapy
-
Depontieu, F. R., J. Qian, A. L. Zarling, T. L. McMiller, T. M. Salay, A. Norris, A. M. English, J. Shabanowitz, V. H. Engelhard, D. F. Hunt, and S. L. Topalian. 2009. Identification of tumor-associated, MHC class II-restricted phosphopeptides as targets for immunotherapy. Proc. Natl. Acad. Sci. USA 106:12073-12078.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 12073-12078
-
-
Depontieu, F.R.1
Qian, J.2
Zarling, A.L.3
McMiller, T.L.4
Salay, T.M.5
Norris, A.6
English, A.M.7
Shabanowitz, J.8
Engelhard, V.H.9
Hunt, D.F.10
Topalian, S.L.11
-
27
-
-
58749083921
-
Methods for analyzing peptides and proteins on a chromatographic timescale by electron-transfer dissociation mass spectrometry
-
Udeshi, N. D., P. D. Compton, J. Shabanowitz, D. F. Hunt, and K. L. Rose. 2008. Methods for analyzing peptides and proteins on a chromatographic timescale by electron-transfer dissociation mass spectrometry. Nat. Protoc. 3:1709-1717.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1709-1717
-
-
Udeshi, N.D.1
Compton, P.D.2
Shabanowitz, J.3
Hunt, D.F.4
Rose, K.L.5
-
28
-
-
33847778786
-
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry
-
Chi, A., C. Huttenhower, L. Y. Geer, J. J. Coon, J. E. Syka, D. L. Bai, J. Shabanowitz, D. J. Burke, O. G. Troyanskaya, and D. F. Hunt. 2007. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc. Natl. Acad. Sci. USA 104:2193-2198.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2193-2198
-
-
Chi, A.1
Huttenhower, C.2
Geer, L.Y.3
Coon, J.J.4
Syka, J.E.5
Bai, D.L.6
Shabanowitz, J.7
Burke, D.J.8
Troyanskaya, O.G.9
Hunt, D.F.10
-
29
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer, L. Y., S. P. Markey, J. A. Kowalak, L. Wagner, M. Xu, D. M. Maynard, X. Yang, W. Shi, and S. H. Bryant. 2004. Open mass spectrometry search algorithm. J. Proteome Res. 3:958-964.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
30
-
-
0033591429
-
Cloning genes encoding MHC class II-restricted antigens: Mutated CDC27 as a tumor antigen
-
Wang, R. F., X. Wang, A. C. Atwood, S. L. Topalian, and S. A. Rosenberg. 1999. Cloning genes encoding MHC class II-restricted antigens: mutated CDC27 as a tumor antigen. Science 284:1351-1354.
-
(1999)
Science
, vol.284
, pp. 1351-1354
-
-
Wang, R.F.1
Wang, X.2
Atwood, A.C.3
Topalian, S.L.4
Rosenberg, S.A.5
-
31
-
-
44649199436
-
Measurement of MHC/peptide interactions by gel filtration
-
Chapter 18: Unit 18.13
-
Sidney, J., S. Southwood, C. Oseroff, M. F. Del Guercio, A. Sette, and H. M. Grey. 2001. Measurement of MHC/peptide interactions by gel filtration. Curr. Protoc. Immunol. Chapter 18: Unit 18.13.
-
(2001)
Curr. Protoc. Immunol.
-
-
Sidney, J.1
Southwood, S.2
Oseroff, C.3
Del Guercio, M.F.4
Sette, A.5
Grey, H.M.6
-
32
-
-
79958184746
-
Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes
-
Greenbaum, J., J. Sidney, J. Chung, C. Brander, B. Peters, and A. Sette. 2011. Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes. Immunogenetics 63:325-335.
-
(2011)
Immunogenetics
, vol.63
, pp. 325-335
-
-
Greenbaum, J.1
Sidney, J.2
Chung, J.3
Brander, C.4
Peters, B.5
Sette, A.6
-
33
-
-
0032055915
-
Several common HLA-DR types share largely overlapping peptide binding repertoires
-
Southwood, S., J. Sidney, A. Kondo, M. F. Del Guercio, E. Appella, S. Hoffman, R. T. Kubo, R. W. Chesnut, H. M. Grey, and A. Sette. 1998. Several common HLA-DR types share largely overlapping peptide binding repertoires. J. Immunol. 160:3363-3373.
-
(1998)
J. Immunol.
, vol.160
, pp. 3363-3373
-
-
Southwood, S.1
Sidney, J.2
Kondo, A.3
Del Guercio, M.F.4
Appella, E.5
Hoffman, S.6
Kubo, R.T.7
Chesnut, R.W.8
Grey, H.M.9
Sette, A.10
-
34
-
-
0031576987
-
Two complementary methods for predicting peptides binding major histocompatibility complex molecules
-
Gulukota, K., J. Sidney, A. Sette, and C. De Lisi. 1997. Two complementary methods for predicting peptides binding major histocompatibility complex molecules. J. Mol. Biol. 267:1258-1267.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1258-1267
-
-
Gulukota, K.1
Sidney, J.2
Sette, A.3
De Lisi, C.4
-
35
-
-
0015861774
-
Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction
-
Cheng, Y., and W. H. Prusoff. 1973. Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction. Biochem. Pharmacol. 22:3099-3108.
-
(1973)
Biochem. Pharmacol.
, vol.22
, pp. 3099-3108
-
-
Cheng, Y.1
Prusoff, W.H.2
-
36
-
-
0033084056
-
Empty and peptide-loaded class II major histocompatibility complex proteins produced by expression in Escherichia coli and folding in vitro
-
Frayser, M., A. K. Sato, L. Xu, and L. J. Stern. 1999. Empty and peptide-loaded class II major histocompatibility complex proteins produced by expression in Escherichia coli and folding in vitro. Protein Expr. Purif. 15:105-114.
-
(1999)
Protein Expr. Purif.
, vol.15
, pp. 105-114
-
-
Frayser, M.1
Sato, A.K.2
Xu, L.3
Stern, L.J.4
-
37
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
part A. C. W. Carter, Jr., and R. M. Sweet, eds. Academic Press, New York
-
Otwinowski, Z., and W. Minor. 1997. Processing of X-ray diffraction data collected in oscillation mode. In Methods in Enzymology. Vol. 276: Macromolecular Crystallography, part A. C. W. Carter, Jr., and R. M. Sweet, eds. Academic Press, New York. p. 307-326.
-
(1997)
Methods in Enzymology. Vol. 276: Macromolecular Crystallography
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
39
-
-
0034214403
-
Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures
-
Bolin, D. R., A. L. Swain, R. Sarabu, S. J. Berthel, P. Gillespie, N. J. Huby, R. Makofske, L. Orzechowski, A. Perrotta, K. Toth, et al. 2000. Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures. J. Med. Chem. 43:2135-2148.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 2135-2148
-
-
Bolin, D.R.1
Swain, A.L.2
Sarabu, R.3
Berthel, S.J.4
Gillespie, P.5
Huby, N.J.6
Makofske, R.7
Orzechowski, L.8
Perrotta, A.9
Toth, K.10
-
40
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., P. D. Adams, G. M. Clore, W. L. De Lano, P. Gros, R. W. Grosse-Kunstleve, J. S. Jiang, J. Kuszewski, M. Nilges, N. S. Pannu, et al. 1998. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54:905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
De Lano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
41
-
-
0032790081
-
XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density
-
McRee, D. E. 1999. XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125:156-165.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
42
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., M. W. MacArthur, D. S. Moss, and J. M. Thornton. 1993. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
43
-
-
77954762820
-
Structural basis for the presentation of tumor-associated MHC class II-restricted phosphopeptides to CD4+ T cells
-
Li, Y., F. R. Depontieu, J. Sidney, T. M. Salay, V. H. Engelhard, D. F. Hunt, A. Sette, S. L. Topalian, and R. A. Mariuzza. 2010. Structural basis for the presentation of tumor-associated MHC class II-restricted phosphopeptides to CD4+ T cells. J. Mol. Biol. 399:596-603.
-
(2010)
J. Mol. Biol.
, vol.399
, pp. 596-603
-
-
Li, Y.1
Depontieu, F.R.2
Sidney, J.3
Salay, T.M.4
Engelhard, V.H.5
Hunt, D.F.6
Sette, A.7
Topalian, S.L.8
Mariuzza, R.A.9
-
44
-
-
0028952168
-
Peptide binding specificity of HLA-DR4 molecules: Correlation with rheumatoid arthritis association
-
Hammer, J., F. Gallazzi, E. Bono, R. W. Karr, J. Guenot, P. Valsasnini, Z. A. Nagy, and F. Sinigaglia. 1995. Peptide binding specificity of HLA-DR4 molecules: correlation with rheumatoid arthritis association. J. Exp. Med. 181:1847-1855.
-
(1995)
J. Exp. Med.
, vol.181
, pp. 1847-1855
-
-
Hammer, J.1
Gallazzi, F.2
Bono, E.3
Karr, R.W.4
Guenot, J.5
Valsasnini, P.6
Nagy, Z.A.7
Sinigaglia, F.8
-
45
-
-
0037018102
-
*0401): Insight into TCR cross-restriction and alloreactivity
-
*0401): insight into TCR cross-restriction and alloreactivity. J. Exp. Med. 195:571-581.
-
(2002)
J. Exp. Med.
, vol.195
, pp. 571-581
-
-
Hennecke, J.1
Wiley, D.C.2
-
46
-
-
0030749517
-
*0401) subjects is associated with a restricted T cell receptor repertoire
-
*0401) subjects is associated with a restricted T cell receptor repertoire. J. Clin. Invest. 100:339-349.
-
(1997)
J. Clin. Invest.
, vol.100
, pp. 339-349
-
-
Muraro, P.A.1
Vergelli, M.2
Kalbus, M.3
Banks, D.E.4
Nagle, J.W.5
Tranquill, L.R.6
Nepom, G.T.7
Biddison, W.E.8
McFarland, H.F.9
Martin, R.10
-
48
-
-
79952750632
-
Structure of a TCR with high affinity for self-antigen reveals basis for escape from negative selection
-
Yin, Y., Y. Li, M. C. Kerzic, R. Martin, and R. A. Mariuzza. 2011. Structure of a TCR with high affinity for self-antigen reveals basis for escape from negative selection. EMBO J. 30:1137-1148.
-
(2011)
EMBO J.
, vol.30
, pp. 1137-1148
-
-
Yin, Y.1
Li, Y.2
Kerzic, M.C.3
Martin, R.4
Mariuzza, R.A.5
-
49
-
-
34548493428
-
Structures of MART-126/27-35 Peptide/HLA-A2 complexes reveal a remarkable disconnect between antigen structural homology and T cell recognition
-
Borbulevych, O. Y., F. K. Insaidoo, T. K. Baxter, D. J. Powell, Jr., L. A. Johnson, N. P. Restifo, and B. M. Baker. 2007. Structures of MART-126/27-35 Peptide/HLA-A2 complexes reveal a remarkable disconnect between antigen structural homology and T cell recognition. J. Mol. Biol. 372:1123-1136.
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 1123-1136
-
-
Borbulevych, O.Y.1
Insaidoo, F.K.2
Baxter, T.K.3
Powell, D.J.4
Johnson Jr., L.A.5
Restifo, N.P.6
Baker, B.M.7
-
50
-
-
70149114880
-
Gene therapy with human and mouse T-cell receptors mediates cancer regression and targets normal tissues expressing cognate antigen
-
Johnson, L. A., R. A. Morgan, M. E. Dudley, L. Cassard, J. C. Yang, M. S. Hughes, U. S. Kammula, R. E. Royal, R. M. Sherry, J. R. Wunderlich, et al. 2009. Gene therapy with human and mouse T-cell receptors mediates cancer regression and targets normal tissues expressing cognate antigen. Blood 114:535-546.
-
(2009)
Blood
, vol.114
, pp. 535-546
-
-
Johnson, L.A.1
Morgan, R.A.2
Dudley, M.E.3
Cassard, L.4
Yang, J.C.5
Hughes, M.S.6
Kammula, U.S.7
Royal, R.E.8
Sherry, R.M.9
Wunderlich, J.R.10
-
51
-
-
33748319512
-
Relating TCR-peptide-MHC affinity to immunogenicity for the design of tumor vaccines
-
McMahan, R. H., J. A. McWilliams, K. R. Jordan, S. W. Dow, D. B. Wilson, and J. E. Slansky. 2006. Relating TCR-peptide-MHC affinity to immunogenicity for the design of tumor vaccines. J. Clin. Invest. 116:2543-2551.
-
(2006)
J. Clin. Invest.
, vol.116
, pp. 2543-2551
-
-
McMahan, R.H.1
McWilliams, J.A.2
Jordan, K.R.3
Dow, S.W.4
Wilson, D.B.5
Slansky, J.E.6
-
52
-
-
75549084463
-
The immune epitope database 2.0
-
Vita, R., L. Zarebski, J. A. Greenbaum, H. Emami, I. Hoof, N. Salimi, R. Damle, A. Sette, and B. Peters. 2010. The immune epitope database 2.0. Nucleic Acids Res. 38 (Database issue):D854-D862.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Vita, R.1
Zarebski, L.2
Greenbaum, J.A.3
Emami, H.4
Hoof, I.5
Salimi, N.6
Damle, R.7
Sette, A.8
Peters, B.9
-
53
-
-
0033786776
-
Encephalitogenic potential of the myelin basic protein peptide (amino acids 83-99) in multiple sclerosis: Results of a phase II clinical trial with an altered peptide ligand
-
Bielekova, B., B. Goodwin, N. Richert, I. Cortese, T. Kondo, G. Afshar, B. Gran, J. Eaton, J. Antel, J. A. Frank, et al. 2000. Encephalitogenic potential of the myelin basic protein peptide (amino acids 83-99) in multiple sclerosis: results of a phase II clinical trial with an altered peptide ligand. Nat. Med. 6:1167-1175.
-
(2000)
Nat. Med.
, vol.6
, pp. 1167-1175
-
-
Bielekova, B.1
Goodwin, B.2
Richert, N.3
Cortese, I.4
Kondo, T.5
Afshar, G.6
Gran, B.7
Eaton, J.8
Antel, J.9
Frank, J.A.10
-
54
-
-
3142543331
-
Differential peptide dynamics is linked to major histocompatibility complex polymorphism
-
Pöhlmann, T., R. A. Böckmann, H. Grubmüller, B. Uchanska-Ziegler, A. Ziegler, and U. Alexiev. 2004. Differential peptide dynamics is linked to major histocompatibility complex polymorphism. J. Biol. Chem. 279:28197-28201.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 28197-28201
-
-
Pöhlmann, T.1
Böckmann, R.A.2
Grubmüller, H.3
Uchanska-Ziegler, B.4
Ziegler, A.5
Alexiev, U.6
-
55
-
-
81155132239
-
Loss of T cell antigen recognition arising from changes in peptide and major histocompatibility complex protein flexibility: Implications for vaccine design
-
Insaidoo, F. K., O. Y. Borbulevych, M. Hossain, S. M. Santhanagopolan, T. K. Baxter, and B. M. Baker. 2011. Loss of T cell antigen recognition arising from changes in peptide and major histocompatibility complex protein flexibility: implications for vaccine design. J. Biol. Chem. 286:40163-40173.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 40163-40173
-
-
Insaidoo, F.K.1
Borbulevych, O.Y.2
Hossain, M.3
Santhanagopolan, S.M.4
Baxter, T.K.5
Baker, B.M.6
-
56
-
-
84867426149
-
Structural and dynamic control of T-cell receptor specificity, cross-reactivity, and binding mechanism
-
Baker, B. M., D. R. Scott, S. J. Blevins, and W. F. Hawse. 2012. Structural and dynamic control of T-cell receptor specificity, cross-reactivity, and binding mechanism. Immunol. Rev. 250:10-31.
-
(2012)
Immunol. Rev.
, vol.250
, pp. 10-31
-
-
Baker, B.M.1
Scott, D.R.2
Blevins, S.J.3
Hawse, W.F.4
-
57
-
-
84868097098
-
Unexpected T-cell recognition of an altered peptide ligand is driven by reversed thermodynamics
-
Allerbring, E. B., A. D. Duru, H. Uchtenhagen, C. Madhurantakam, M. B. Tomek, S. Grimm, P. A. Mazumdar, R. Friemann, M. Uhlin, T. Sandalova, et al. 2012. Unexpected T-cell recognition of an altered peptide ligand is driven by reversed thermodynamics. Eur. J. Immunol. 42:2990-3000.
-
(2012)
Eur. J. Immunol.
, vol.42
, pp. 2990-3000
-
-
Allerbring, E.B.1
Duru, A.D.2
Uchtenhagen, H.3
Madhurantakam, C.4
Tomek, M.B.5
Grimm, S.6
Mazumdar, P.A.7
Friemann, R.8
Uhlin, M.9
Sandalova, T.10
-
58
-
-
84867432034
-
Structural basis for self-recognition by autoimmune T-cell receptors
-
Yin, Y., Y. Li, and R. A. Mariuzza. 2012. Structural basis for self-recognition by autoimmune T-cell receptors. Immunol. Rev. 250:32-48.
-
(2012)
Immunol. Rev.
, vol.250
, pp. 32-48
-
-
Yin, Y.1
Li, Y.2
Mariuzza, R.A.3
-
59
-
-
34248530182
-
Structural basis for the recognition of mutant self by a tumor-specific, MHC class II-restricted T cell receptor
-
Deng, L., R. J. Langley, P. H. Brown, G. Xu, L. Teng, Q. Wang, M. I. Gonzales, G. G. Callender, M. I. Nishimura, S. L. Topalian, and R. A. Mariuzza. 2007. Structural basis for the recognition of mutant self by a tumor-specific, MHC class II-restricted T cell receptor. Nat. Immunol. 8:398-408.
-
(2007)
Nat. Immunol.
, vol.8
, pp. 398-408
-
-
Deng, L.1
Langley, R.J.2
Brown, P.H.3
Xu, G.4
Teng, L.5
Wang, Q.6
Gonzales, M.I.7
Callender, G.G.8
Nishimura, M.I.9
Topalian, S.L.10
Mariuzza, R.A.11
-
60
-
-
84866277299
-
Structural insights into the editing of germ-line-encoded interactions between T-cell receptor and MHC class II by Va CDR3
-
Deng, L., R. J. Langley, Q. Wang, S. L. Topalian, and R. A. Mariuzza. 2012. Structural insights into the editing of germ-line-encoded interactions between T-cell receptor and MHC class II by Va CDR3. Proc. Natl. Acad. Sci. USA 109:14960-14965.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 14960-14965
-
-
Deng, L.1
Langley, R.J.2
Wang, Q.3
Topalian, S.L.4
Mariuzza, R.A.5
-
61
-
-
18244392426
-
Unconventional topology of self peptide-major histocompatibility complex binding by a human autoimmune T cell receptor
-
Hahn, M., M. J. Nicholson, J. Pyrdol, and K. W. Wucherpfennig. 2005. Unconventional topology of self peptide-major histocompatibility complex binding by a human autoimmune T cell receptor. Nat. Immunol. 6:490-496.
-
(2005)
Nat. Immunol.
, vol.6
, pp. 490-496
-
-
Hahn, M.1
Nicholson, M.J.2
Pyrdol, J.3
Wucherpfennig, K.W.4
-
62
-
-
61949241207
-
T cell-mediated autoimmune disease due to low-affinity crossreactivity to common microbial peptides
-
Harkiolaki, M., S. L. Holmes, P. Svendsen, J. W. Gregersen, L. T. Jensen, R. McMahon, M. A. Friese, G. Van Boxel, R. Etzensperger, J. S. Tzartos, et al. 2009. T cell-mediated autoimmune disease due to low-affinity crossreactivity to common microbial peptides. Immunity 30:348-357.
-
(2009)
Immunity
, vol.30
, pp. 348-357
-
-
Harkiolaki, M.1
Holmes, S.L.2
Svendsen, P.3
Gregersen, J.W.4
Jensen, L.T.5
McMahon, R.6
Friese, M.A.7
Van Boxel, G.8
Etzensperger, R.9
Tzartos, J.S.10
|