Temporal profiling of primary metabolites under chilling stress and its association with seedling chilling tolerance of rice (Oryza sativa L.)

Rice

Volumn 6, Issue 1, 2013, Pages 1-13

  Zhao, Xiu Qin ^a   Wang, Wen Sheng ^a   Zhang, Fan ^a   Zhang, Ting ^a   Zhao, Wen ^a   Fu, Bin Ying ^a   Li, Zhi Kang ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Primary metabolites; Rice; Seedling chilling tolerance; Transcriptomic responses

Indexed keywords

JAPONICA; ORYZA SATIVA;

EID: 84887294429     PISSN: 19398425     EISSN: 19398433     Source Type: Journal    
DOI: 10.1186/1939-8433-6-23     Document Type: Article

References (57)

1. Andaya VC, Tai TH (2006) Fine mapping of the qCTS12 locus, a major QTL for seedling cold tolerance in rice. Theor Appl Genet 113:467-475
2. Angus JF, Lewin LG (1991) Forecasting Australian rice yields. In: Cheng S, Cady CW (ed) Climatic variation and change: implications for the pacific rim. University of California Press, Davis
3. Araujo WL, Trofimova L, Mkrtchyan G, Steinhauser D, Krall L, Graf A, Fernie AR, Bunik VI (2013) On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism. Amino Acids 44:683-700
4. Armengaud P, Sulpice R, Miller AJ, Stitt M, Amtmann A, Gibon Y (2009) Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiol 150:772-785
5. Baruah AR, Ishigo-Oka N, Adachi M, Oguma Y, Tokizono Y, Onishi K, Sano Y (2009) Cold tolerance at the early growth stage in wild and cultivated rice. Euphytica 165:459-470
6. Bowne JB, Erwin TA, Juttner J, Schnurbusch T, Langridge P, Bacic A, Roessner U (2012) Drought responses of leaf tissues from wheat cultivars of differing drought tolerance at the metabolite level. Mol Plant 5:418-429
7. Cheng C, Yun KY, Ressom HW, Mohanty B, Bajic VB, Jia Y, Yun SJ, de los Reyes BG (2007) An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice. BMC Genomics 8:175
8. Cook D, Fowler S, Fiehn O, Thomashow MF (2004) A prominent role for the CBF cold response pathway in configuring the low temperature metabolome of Arabidopsis. Proc Natl Acad Sci U S A 101:15243-15248
9. Davey MP, Woodward FI, Quick WP (2009) Intraspecfic variation in cold-temperature metabolic phenotypes of Arabidopsis lyrata ssp.Petraea. Metabolomics 5:138-149
10. De Datta SK (1981) The climatic environment and its effects on rice production. In: De Datta SK (ed) Principles and Practices of Rice Production. John Wiley & Sons, Chichester
11. Fowler S, Thomashow MF (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 14:1675-1690.
12. Garg AK, Kim JK, Owens TG, Ranwala AP, Choi YD, Kochian LV, Wu RJ (2002) Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc Natl Acad Sci U S A 99:15898-15903.
13. Gilmour SJ, Sebolt AM, Salazar MP, Everard JD, Thomashow MF (2000) Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol 124:1854-1865
14. Glaszmann JC, Kaw RN, Khush GS (1990) Genetic divergence among cold tolerant rices (Oryza sativa L.). Euphytica 45:95-104
15. Guy C, Kaplan F, Kopka J, Selbig J, Hincha DK (2008) Metabolomics of temperature stress. Physiol Plant 132:220-235
16. Hannah MA, Wiese D, Freund S, Fiehn O, Heyer AG, Hincha DK (2006) Natural genetic variation of freezing tolerance in Arabidopsis. Plant Physiol 142:98-112
17. Hashimoto M, Komatsu S (2007) Proteomic analysis of rice seedlings during cold stress. Proteomics 7:1293-1302
18. Hayat S, Hayat Q, Alyemeni MN, Wani AS, Pichtel J, Ahmad A (2012) Role of proline under changing environments: a review. Plant Signal Behav 7 (11):1456-66
19. Humphreys L, Sides R, Fattore A (1996) Rice establishment. Farmers News Letter Large Area 147:30-31
20. Jacobs BC, Pearson CJ (1999) Growth, development and yield of rice in response to cold temperature. J Agro Crop Sci 182:79-88
21. Kanada CBH (1974) Response of indica-japonica rice hybrids to low temperatures. SABRAO J 6:17-32
22. Kanneganti V, Gupta AK (2008) Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice. Plant Mol Biol 66:445-462
23. Kaplan F, Kopka J, Haskell DW, Zhao W, Schiller KC, Gatzke N, Sung DY, Guy CL (2004) Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiol 136:4159-4168
24. Kavi Kishor PB, Sreenivasulu N (2013) Is proline accumulation per se correlated with stress tolerance or is proline homoeostasis a more critical issue? Plant Cell Environ. doi: 10.1111/pce.12157
25. Kawakami A, Sato Y, Yoshida M (2008) Genetic engineering rice capable of synthesizing fructans and enhancing chilling tolerance. J Exp Bot 59:793-802
26. Korn M, Gärtner T, Erban A, Kopka J, Selbig J, Hincha DK (2010) Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition. Mol Plant 3:224-235
27. Kreps JA, Wu Y, Chang HS, Zhu T, Wang X, Harper JF (2002) Transcriptome changes for Arabidopsis in response to salt, osmotic and cold stress. Plant Physiol 130:2129-2141
28. Lee TM, Lur HS, Chu C (1993) Role of abscisic acid in chilling tolerance of rice (Oryza sativa L.) seedlings. I. Endogenous abscisic acid levels. Plant Cell Environ 16:481-490
29. Lee TM, Lur HS, Lin YH, Chu C (1996) Physiological and biochemical changes related to methyl jasmonate-induced chilling tolerance of rice (Oryza sativa L.) seedlings. Plant Cell Environ 19:65-74
30. Levitt J (1972) Responses of plants to environmental stresses. Academic Press, New York
31. López-Bucio J, Nieto-Jacobo MF, Ramírez-Rodríguez V, Herrera-Estrella L (2000) Organic acid metabolism in plants: from adaptive physiology to transgenic varieties for cultivation in extreme soils. Plant Sci 160:1-13
32. Ma Q, Dai X, Xu Y, Guo J, Liu Y, Chen N, Xiao J, Zhang D, Xu Z, Zhang X, Chong K (2009) Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes. Plant Physiol 150:244-256
33. Maruyama K, Takeda M, Kidokoro S, Yamada K, Sakuma Y, Urano K, Fujita M, Yoshiwara K, Matsukura S, Morishita Y, Sasaki R, Suzuki H, Saito K, Shibata D, Shinozaki K, Yamaguchi-Shinozaki K (2009) Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol 150:1972-1980
34. Nägele T, Stutz S, Hörmiller II, Heyer AG (2012) Identification of a metabolic bottleneck for cold acclimation in Arabidopsis thaliana. Plant J 72:102-14
35. Naidu BP, Palega LG, Aspinalla D, Jenningsb AC, Jones GP (1991) Amino acid and glycine betaine accumulation in cold-stressed wheat seedlings. Phytochemistry 30:407-409
36. Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki K (2007) Functional analysis of a NACtype transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J 51:617-630
37. Nikiforova VJ, Bielecka M, Gakiere B, Krueger S, Rinder J, Kempa S, Morcuende R, Scheible WR, Hesse H, Hoefgen R (2006) Effect of sulfur availability on the integrity of amino acid biosynthesis in plants. Amino Acids 30:173-183
38. Oh SJ, Kim YS, Kwon CW, Park HK, Jeong JS, Kim JK (2009) Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiol 150:1368-1379
39. Oliver SN, Dennis ES, Dolferus R (2007) ABA Regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant Cell Physiol 48:1319-1330
40. Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K (2002) DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration-and cold-inducible gene expression. Biochem Biophys Res Commun 290:998-1009
41. SAS Institute Inc (1996) SAS/STAT user's guide. SAS Institute Inc., Cary, NC
42. Seki M, Narusaka M, Abe H, Kasuga M, Yamaguchi-Shinozaki K, Carninci P, Hayashizaki Y, Shinozaki K (2001) Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13:61-72
43. Shimono H, Hasegawa T, Iwama K (2002) Response of growth and grain yield in paddy rice to cool water at different growth stage. Field Crop Res 73:67-79
44. Shinozaki K, Dennis ES (2003) Cell signalling and gene regulation: global analyses of signal transduction and gene expression profiles. Curr Opin Plant Biol 6:405-409
45. Shirasawa K, Takabe T, Takabe T, Kishitani S (2006) Accumulation of glycinebetaine in rice plants that overexpress choline monooxygenase from spinach and evaluation of their tolerance to abiotic stress. Ann Bot 98:565-571
46. Suzuki K, Nagasuga K, Okada M (2008) The chilling injury induced by high root temperature in the leaves of rice seedlings. Plant Cell Physiol 49:433-442
47. Tseng TH, Teng YC (1985) Cold tolerance of rice at seeding stage. II. Effects of air temperatures before and after chilling treatment on cold tolerance. J Agricul Res China 34:145-156
48. Urano K, Maruyama K, Ogata Y, Morishita Y, Takeda M, Sakurai N, Suzuki H, Saito K, Shibata D, Kobayashi M, Yamaguchi-Shinozaki K, Shinozaki K (2009) Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J 57:1065-1078
49. Wang JM, Lin XY, Sun Q, Jena KK (2013) Evaluation of cold tolerance for japonica rice varieties from different country. Adv J Food Sci Technol 5:54-56
50. Wu D, Cai S, Chen M, Ye L, Chen Z, Zhang H, Dai F, Wu F, Zhang G (2013) Tissue metabolic responses to salt stress in wild and cultivated barley. PLoS One 8 (1):e55431
51. Ye C, Shu F, Russell R, Ian G, Peter S, Jaya B (2008) Screening rice genetic resources for cold tolerance at different growth stages. In: Unkovich M(ed) Global Issues, Paddock Action: Proceedings of the 14th Australian Society of Agronomy Conference. 14th Australian Society of Agronomy Conference, Adelaide, South Australia
52. Ye C, Fukai S, Godwin ID, Koh H, Reinke R, Zhou Y, Lambrides C, Jiang W, Snell P, Redona E (2010) A QTL controlling low temperature induced spikelet sterility at booting stage in rice. Euphytica 176:291-301
53. Yobi A, Wone BW, Xu W, Alexander DC, Guo L, Ryals JA, Oliver MJ, Cushman JC (2012) Comparative metabolic profiling between desiccation-sensitive and desiccation-tolerant species of Selaginella reveals insights into the resurrection trait. Plant J 72:983-999
54. Zhang F, Huang L, Wang W, Zhao X, Zhu L, Fu B, Li Z (2012a) Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background. BMC Genomics 13(1):461
55. Zhang T, Zhao X, Wang W, Pan Y, Huang L, Liu X, Zong Y, Zhu L, Yang D, Fu B (2012b) Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes. PLoS One 7(8):e43274
56. Zuther E, Büchel K, Hundertmark M, Stitt M, Hincha DK, Heyer AG (2004) The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett 576:169-173
57. Zuther E, Koehl K, Kopka J (2007) Comparative metabolome analysis of the salt response in breeding cultivars of rice. In: Jenks MA, Hasegawa PM, Jain SM (ed) Advances in molecular breeding toward drought and salt tolerance crops. Springer-Verlag, Berlin, Heidelberg, New York