Evaluation of quantitative performance of sequential immobilized metal affinity chromatographic enrichment for phosphopeptides

Analytical Biochemistry

Volumn 445, Issue 1, 2014, Pages 30-37

  Sun, Zeyu ^a   Hamilton, Karyn L ^b   Reardon, Kenneth F ^a  

^a Department of Mechanical Engineering   (United States)

^b Veterinary Dentistry and Oral Surgery   (United States)

Author keywords

Affinity chromatography; IMAC; MOAC; Phosphopeptides; Proteomics; SIMAC

Indexed keywords

MAMMALS; METALS; PROTEINS; PROTEOMICS; TITANIUM DIOXIDE;

BOVINE SERUM ALBUMINS; CONSISTENT PERFORMANCE; IMAC; IMMOBILIZED METAL AFFINITY CHROMATOGRAPHY; METAL OXIDE AFFINITY CHROMATOGRAPHIES; MOAC; PHOSPHOPEPTIDES; SIMAC;

AFFINITY CHROMATOGRAPHY;

BOVINE SERUM ALBUMIN; CASEIN; GALLIUM; PHOSPHOPEPTIDE; TITANIUM DIOXIDE;

AFFINITY CHROMATOGRAPHY; ARTICLE; ELUTION; EVALUATION; IMMOBILIZED METAL AFFINITY CHROMATOGRAPHY; METAL OXIDE AFFINITY CHROMATOGRAPHY; PRIORITY JOURNAL; SEQUENTIAL IMMOBILIZED METAL AFFINITY CHROMATOGRAPHY;

BOVINAE;

AFFINITY CHROMATOGRAPHY; IMAC; MOAC; PHOSPHOPEPTIDES; PROTEOMICS; SIMAC;

AMINO ACID SEQUENCE; ANIMALS; CASEINS; CATTLE; CHROMATOGRAPHY, AFFINITY; GALLIUM; MOLECULAR SEQUENCE DATA; PHOSPHOPEPTIDES; SERUM ALBUMIN, BOVINE; TANDEM MASS SPECTROMETRY; TITANIUM; TRYPSIN;

EID: 84887274297     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2013.09.025     Document Type: Article

References (35)

1. G. Muszynska, G. Dobrowolska, A. Medin, P. Ekman, and J.O. Porath Model studies on iron(III) ion affinity-chromatography: II. Interaction of immobilized iron(III) ions with phosphorylated amino-acids, peptides, and proteins J. Chromatogr. 604 1992 19 28
2. M.C. Posewitz, and P. Tempst Immobilized gallium(III) affinity chromatography of phosphopeptides Anal. Chem. 71 1999 2883 2892 (Pubitemid 29340481)
3. S. Feng, M. Ye, H. Zhou, X. Jiang, X. Jiang, H. Zou, and B. Gong Immobilized zirconium ion affinity chromatography for specific enrichment of phosphopeptides in phosphoproteome analysis Mol. Cell. Proteomics 6 2007 1656 1665 (Pubitemid 47506174)
4. 4+ affinity chromatography microspheres for specific enrichment of phosphopeptides Anal. Chim. Acta 636 2009 34 41
5. A. Sano, and H. Nakamura Titania as a chemo-affinity support for the column-switching HPLC analysis of phosphopeptides: application to the characterization of phosphorylation sites in proteins by combination with protease digestion and electrospray ionization mass spectrometry Anal. Sci. 20 2004 861 864
6. A. Sano, and H. Nakamura Chemo-affinity of titania for the column-switching HPLC analysis of phosphopeptides Anal. Sci. 20 2004 565 566
7. U.K. Aryal, and A.R. Ross Enrichment and analysis of phosphopeptides under different experimental conditions using titanium dioxide affinity chromatography and mass spectrometry Rapid Commun. Mass Spectrom. 24 2010 219 231
8. M.B. Gates, K.B. Tomer, and L.J. Deterding Comparison of metal and metal oxide media for phosphopeptide enrichment prior to mass spectrometric analyses J. Am. Soc. Mass Spectrom. 21 2010 1649 1659
9. A. Leitner, M. Sturm, O. Hudecz, M. Mazanek, J.H. Smatt, M. Linden, W. Lindner, and K. Mechtler Probing the phosphoproteome of HeLa cells using nanocast metal oxide microspheres for phosphopeptide enrichment Anal. Chem. 82 2010 2726 2733
10. J.V. Olsen, B. Blagoev, F. Gnad, B. Macek, C. Kumar, P. Mortensen, and M. Mann Global, in vivo, and site-specific phosphorylation dynamics in signaling networks Cell 127 2006 635 648 (Pubitemid 44647421)
11. B. Macek, I. Mijakovic, J.V. Olsen, F. Gnad, C. Kumar, P.R. Jensen, and M. Mann The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis Mol. Cell. Proteomics 6 2007 697 707 (Pubitemid 46630102)
12. M.R. Larsen, T.E. Thingholm, O.N. Jensen, P. Roepstorff, and T.J. Jorgensen Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns Mol. Cell. Proteomics 4 2005 873 886 (Pubitemid 41309146)
13. F. Wolschin, S. Wienkoop, and W. Weckwerth Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography MOAC Proteomics 5 2005 4389 4397 (Pubitemid 41739917)
14. M.W. Pinkse, P.M. Uitto, M.J. Hilhorst, B. Ooms, and A.J. Heck Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide precolumns Anal. Chem. 76 2004 3935 3943 (Pubitemid 38943662)
15. Y. Ikeguchi, and H. Nakamura Determination of organic phosphates by column-switching high performance anion-exchange chromatography using on-line preconcentration on titania Anal. Sci. 13 1997 479 483 (Pubitemid 127479861)
16. H.J. Zhou, R.J. Tian, M.L. Ye, S.Y. Xu, S. Feng, C.S. Pan, X.G. Jiang, X. Li, and H.F. Zou Highly specific enrichment of phosphopeptides by zirconium dioxide nanoparticles for phosphoproteome analysis Electrophoresis 28 2007 2201 2215 (Pubitemid 47065147)
17. E.W. Shin, J.S. Han, M. Jang, S.H. Min, J.K. Park, and R.M. Rowell Phosphate adsorption on aluminum-impregnated mesoporous silicates: surface structure and behavior of adsorbents Environ. Sci. Technol. 38 2004 912 917 (Pubitemid 38168763)
18. S.S. Jensen, and M.R. Larsen Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques Rapid Commun. Mass Spectrom. 21 2007 3635 3645 (Pubitemid 350124632)
19. M. Nousiainen, H.H. Sillje, G. Sauer, E.A. Nigg, and R. Korner Phosphoproteome analysis of the human mitotic spindle Proc. Natl. Acad. Sci. U.S.A. 103 2006 5391 5396
20. S.B. Ficarro, M.L. McCleland, P.T. Stukenberg, D.J. Burke, M.M. Ross, J. Shabanowitz, D.F. Hunt, and F.M. White Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae Nat. Biotechnol. 20 2002 301 305 (Pubitemid 34205425)
21. T.E. Thingholm, O.N. Jensen, P.J. Robinson, and M.R. Larsen SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides Mol. Cell. Proteomics 7 2008 661 671 (Pubitemid 351597478)
22. T.E. Thingholm, O.N. Jensen, and M.R. Larsen Enrichment and separation of mono- and multiply phosphorylated peptides using sequential elution from IMAC prior to mass spectrometric analysis Methods Mol. Biol. 527 2009 67 78
23. M. Carrascal, D. Ovelleiro, V. Casas, M. Gay, and J. Abian Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment J. Proteome Res. 7 2008 5167 5176
24. L.J. Meyer, J. Gao, D. Xu, and J.J. Thelen Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean Plant Physiol. 159 2012 517 528
25. J. Pan, B. Naumann-Busch, L. Wang, M. Specht, M. Scholz, K. Trompelt, and M. Hippler Protein phosphorylation is a key event of flagellar disassembly revealed by analysis of flagellar phosphoproteins during flagellar shortening in Chlamydomonas J. Proteome Res. 10 2011 3830 3839
26. R. Kange, U. Selditz, M. Granberg, U. Lindberg, G. Ekstrand, B. Ek, and M. Gustafsson Comparison of different IMAC techniques used for enrichment of phosphorylated peptides J. Biomol. Tech. 16 2005 91 103
27. T. Pluskal, S. Castillo, A. Villar-Briones, and M. Oresic MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data BMC Bioinformatics 11 2010 395
28. P. Casado, and P.R. Cutillas A self-validating quantitative mass spectrometry method for assessing the accuracy of high-content phosphoproteomic experiments Mol. Cell. Proteomics 10 2011 110
29. B. Bodenmiller, L.N. Mueller, M. Mueller, B. Domon, and R. Aebersold Reproducible isolation of distinct, overlapping segments of the phosphoproteome Nat. Methods 4 2007 231 237 (Pubitemid 46358873)
30. 2 beads ratio on phosphopeptide enrichment selectivity J. Proteome Res. 8 2009 5375 5381
31. A.N. Kettenbach, and S.A. Gerber Rapid and reproducible single-stage phosphopeptide enrichment of complex peptide mixtures: application to general and phosphotyrosine-specific phosphoproteomics experiments Anal. Chem. 83 2011 7635 7644
32. 2 enrichment method for label-free quantitative phosphoproteomics Methods 54 2011 370 378
33. E.J. Soderblom, M. Philipp, J.W. Thompson, M.G. Caron, and M.A. Moseley Quantitative label-free phosphoproteomics strategy for multifaceted experimental designs Anal. Chem. 83 2011 3758 3764
34. N. Sugiyama, T. Masuda, K. Shinoda, A. Nakamura, M. Tomita, and Y. Ishihama Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications Mol. Cell. Proteomics 6 2007 1103 1109 (Pubitemid 47019410)
35. 2 enrich for peptide modifications other than phosphorylation: Implications for chromatographic choice and database searching in phosphoproteomics Proteomics 11 2011 4583 4587