Comprehensive glycerol ether lipid fingerprints through a novel reversed phase liquid chromatography-mass spectrometry protocol

Organic Geochemistry

Volumn 65, Issue , 2013, Pages 53-62

  Zhu, Chun ^a   Lipp, Julius S ^a   Wörmer, Lars ^a   Becker, Kevin W ^a   Schröder, Jan ^a   Hinrichs, Kai Uwe ^a  

^a UNIVERSITY OF BREMEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MECHANISMS; ENVIRONMENTAL CHANGE; LIPID COMPOSITION; LIPID DISTRIBUTIONS; MICROBIAL COMMUNITY COMPOSITION; POLAR HEADGROUPS; SIMULTANEOUS ANALYSIS; STRUCTURAL COMPLEXITY;

ELECTROSPRAY IONIZATION; FORESTRY; GLYCEROL; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY;

LIPIDS;

COMMUNITY COMPOSITION; ENVIRONMENTAL CHANGE; ETHER; LIPID; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MICROBIAL COMMUNITY;

ARCHAEA;

EID: 84887258374     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2013.09.012     Document Type: Article

References (43)

1. Aveldano M.I., Vanrollins M., Horrocks L.A. Separation and quantitation of free fatty-acids and fatty-acid methyl-esters by reverse phase high-pressure liquid-chromatography. Journal of Lipid Research 1983, 24:83-93.
2. Becker K.W., Lipp J.S., Zhu C., Liu X., Hinrichs K.-U. An improved method for the analysis of archaeal and bacterial ether core lipids. Organic Geochemistry 2013, 61:34-44.
3. Biddle J.F., Lipp J.S., Lever M.A., Lloyd K.G., Sorensen K.B., Anderson R., Fredricks H.F., Elvert M., Kelly T.J., Schrag D.P., Sogin M.L., Brenchley J.E., Teske A., House C.H., Hinrichs K.U. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proceedings of the National Academy of Sciences USA 2006, 103:3846-3851.
4. Bolle M.P., Pardo A., Hinrichs K.-U., Adatte T., Von Salis K., Keller G., Muzylev N. The Paleocene-Eocene transition in the marginal northeastern Tethys (Kazakhstan and Uzbekistan). International Journal of Earth Sciences 2000, 89:390-414.
5. Byrdwell W.C. Atmospheric pressure chemical ionization mass spectrometry for analysis of lipids. Lipids 2001, 36:327-346.
6. Elvert M., Boetius A., Knittel K., Jorgensen B.B. Characterization of specific membrane fatty acids as chemotaxonomic markers for sulfate-reducing bacteria involved in anaerobic oxidation of methane. Geomicrobiology Journal 2003, 20:403-419.
7. Fisher D., Sahling H., Nöthen K., Bohrmannn G., Zabel M., Kasten S. Interaction between hydrocarbon seepage, chemosynthetic communities and bottom water anoxia at cold seeps of the Makran accretionary prism: insights from habitat-specific pore water sampling and modeling. Bioeosciences 2012, 9:2013-2031.
8. Gibson J.a.E., Miller M.R., Davies N.W., Neill G.P., Nichols D.S., Volkman J.K. Unsaturated diether lipids in the psychrotrophic archaeon Halorubrum lacusprofundi. Systematic and Applied Microbiology 2005, 28:19-26.
9. Harvey H.R., Fallon R.D., Patton J.S. The effect of organic-matter and oxygen on the degradation of bacterial-membrane lipids in marine-sediments. Geochimica et Cosmochimica Acta 1986, 50:795-804.
10. Hinrichs K.U., Hayes J.M., Sylva S.P., Brewer P.G., Delong E.F. Methane-consuming archaebacteria in marine sediments. Nature 1999, 398:802-805.
11. Hopmans E.C., Schouten S., Pancost R.D., Van Der Meer M.T.J., Sinninghe Damsté J.S. Analysis of intact tetraether lipids in archaeal cell material and sediments by high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry. Rapid Communications in Mass Spectrometry 2000, 14:585-589.
12. Huguet C., Hopmans E.C., Febo-Ayala W., Thompson D.H., Sinninghe Damsté J.S., Schouten S. An improved method to determine the absolute abundance of glycerol dibiphytanyl glycerol tetraether lipids. Organic Geochemistry 2006, 37:1036-1041.
13. Huguet C., Martens-Habbena W., Urakawa H., Stahl D.A., Ingalls A.E. Comparison of extraction methods for quantitative analysis of core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in environmental samples. Limnology and Oceanography - Methods 2010, 8:127-145.
14. Ikeda M., Kusaka T. Liquid-chromatography mass-spectrometry of hydroxy and non-hydroxy fatty-Acids as amide derivatives. Journal of Chromatography - Biomedical Applications 1992, 575:197-205.
15. Knappy C.S., Chong J.P.J., Keely B.J. Rapid discrimination of archaeal tetraether lipid cores by liquid chromatography-tandem mass spectrometry. Journal of the American Society for Mass Spectrometry 2009, 20:51-59.
16. Koga Y., Morii H. Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects. Bioscience Biotechnology and Biochemistry 2005, 69:2019-2034.
17. Kuypers M.M.M., Blokker P., Erbacher J., Kinkel H., Pancost R.D., Schouten S., Sinninghe Damsté J.S. Massive expansion of marine archaea during a mid-Cretaceous oceanic anoxic event. Science 2001, 293:92-94.
18. Larsen A., Mokastet E., Lundanes E., Hvattum E. Separation and identification of phosphatidylserine molecular species using reversed-phase high-performance liquid chromatography with evaporative light scattering and mass spectrometric detection. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 2002, 774:115-120.
19. Lipp J.S., Hinrichs K.-U. Structural diversity and fate of intact polar lipids in marine sediments. Geochimica et Cosmochimica Acta 2009, 73:6816-6833.
20. Lipp J.S., Morono Y., Inagaki F., Hinrichs K.-U. Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 2008, 454:991-994.
21. Liu X.L., Lipp J.S., Hinrichs K.-U. Distribution of intact and core GDGTs in marine sediments. Organic Geochemistry 2011, 42:368-375.
22. Liu X.L., Lipp J.S., Simpson J.H., Lin Y.S., Summons R.E., Hinrichs K.-U. Mono- and dihydroxyl glycerol dibiphytanyl glycerol tetraethers in marine sediments: Identification of both core and intact polar lipid forms. Geochimica et Cosmochimica Acta 2012, 89:102-115.
23. Nichols D.S., Davies N.W. Improved detection of polyunsaturated fatty acids as phenacyl esters using liquid chromatography-ion trap mass spectrometry. Journal of Microbiological Methods 2002, 50:103-113.
24. Nichols P.D., Franzmann P.D. Unsaturated diether phospholipids in the antarctic methanogen Methanococcoides-burtonii. FEMS Microbiology Letters 1992, 98:205-208.
25. Oba M., Sakata S., Tsunogai U. Polar and neutral isopranyl glycerol ether lipids as biomarkers of archaea in near-surface sediments from the Nankai Trough. Organic Geochemistry 2006, 37:1643-1654.
26. Pearson A., Huang Z., Ingalls A.E., Romanek C.S., Wiegel J., Freeman K.H., Smittenberg R.H., Zhang C.L. Nonmarine crenarchaeol in Nevada hot springs. Applied and Environmental Microbiology 2004, 70:5229-5237.
27. Pitcher A., Hopmans E.C., Mosier A.C., Park S.J., Rhee S.K., Francis C.A., Schouten S., Sinninghe Damsté J.S. Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments. Applied and Environmental Microbiology 2011, 77:3468-3477.
28. Rütters H., Sass H., Cypionka H., Rullkötter J. Monoalkylether phospholipids in the sulfate-reducing bacteria Desulfosarcina variabilis and Desulforhabdus amnigenus. Archives of Microbiology 2001, 176:435-442.
29. Schouten S., Hopmans E.C., Schefuss E., Sinninghe Damsté J.S. Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures?. Earth and Planetary Science Letters 2002, 204:265-274.
30. Schouten S., Huguet C., Hopmans E.C., Kienhuis M.V.M., Sinninghe Damsté J.S. Analytical methodology for TEX86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry. Analytical Chemistry 2007, 79:2940-2944.
31. Schubotz F., Wakeham S.G., Lipp J.S., Fredricks H.F., Hinrichs K.-U. Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea. Environmental Microbiology 2009, 11:2720-2734.
32. Sommer U., Herscovitz H., Welty F.K., Costello C.E. LC-MS-based method for the qualitative and quantitative analysis of complex lipid mixtures. Journal of Lipid Research 2006, 47:804-814.
33. Sprott G.D., Ekiel I., Dicaire C. Novel, acid-labile, hydroxydiether lipid cores in methanogenic bacteria. Journal of Biological Chemistry 1990, 265:13735-13740.
34. Sturt H.F., Summons R.E., Smith K., Elvert M., Hinrichs K.U. Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry - new biomarkers for biogeochemistry and microbial ecology. Rapid Communications in Mass Spectrometry 2004, 18:617-628.
35. Weijers J.W.H., Schouten S., Van Den Donker J.C., Hopmans E.C., Sinninghe Damsté J.S. Environmental controls on bacterial tetraether membrane lipid distribution in soils. Geochimica et Cosmochimica Acta 2007, 71:703-713.
36. White D.C., Davis W.M., Nickels J.S., King J.D., Bobbie R.J. Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 1979, 40:51-62.
37. Willmann J., Thiele H., Leibfritz D. Combined reversed phase HPLC, mass spectrometry, and NMR spectroscopy for a fast separation and efficient identification of phosphatidylcholines. Journal of Biomedicine and Biotechnology 2011, 10.1155/2011/385786.
38. Wörmer L., Lipp J.S., Schröder J.M., Hinrichs K.-U. Application of two new LC-ESI-MS methods for improved detection 2 of intact polar lipids (IPLs) in environmental samples. Organic Geochemistry 2013, 59:10-21.
39. 86 paleothermometry. Paleoceanography 2004, 19. 10.1029/2004PA001041.
40. Xie S., Lipp J.S., Wegener G., Ferdelman T.G., Hinrichs K.-U. Turnover of microbial lipids in the deep biosphere and growth of benthic archaeal populations. Proceedings of the National Academy of Sciences USA 2013, 110:6010-6014.
41. Yoshinaga M.Y., Kellermann M.Y., Rossel P.E., Schubotz F., Lipp J.S., Hinrichs K.-U. Systematic fragmentation patterns of archaeal intact polar lipids by high-performance liquid chromatography/electrospray ionization ion-trap mass spectrometry. Rapid Communications in Mass Spectrometry 2011, 25:3563-3574.
42. Yoshinaga M.Y., Wörmer L., Elvert M., Hinrichs K.-U. Novel cardiolipins from uncultured methane-metabolizing archaea. Archaea - An International Microbiological Journal 2012, 10.1155/2012/832097.
43. Zink K.G., Mangelsdorf K. Efficient and rapid method for extraction of intact phospholipids from sediments combined with molecular structure elucidation using LC-ESI-MS-MS analysis. Analytical and Bioanalytical Chemistry 2004, 380:798-812.