메뉴 건너뛰기




Volumn 68, Issue , 2014, Pages 348-356

Impacts of naturally elevated soil CO2 concentrations on communities of soil archaea and bacteria

Author keywords

16S rRNA; Aboveground belowground interactions; Carbon capture and storage (CCS); Extreme environment; Hypoxia; Mofettes; Natural CO2 springs; Soil biodiversity; Terminal restriction fragment length polymorphisms

Indexed keywords

16S RRNA; CARBON CAPTURE AND STORAGE; EXTREME ENVIRONMENT; HYPOXIA; MOFETTES; NATURAL CO; SOIL BIODIVERSITY; TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISMS;

EID: 84887179420     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2013.10.018     Document Type: Article
Times cited : (46)

References (56)
  • 3
    • 46749150088 scopus 로고    scopus 로고
    • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
    • Bent S.J., Forney L.J. The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. ISME J. 2008, 2:689-695.
    • (2008) ISME J. , vol.2 , pp. 689-695
    • Bent, S.J.1    Forney, L.J.2
  • 7
    • 77149148775 scopus 로고    scopus 로고
    • Relative roles of niche and neutral processes in structuring a soil microbial community
    • Dumbrell A.J., Nelson M., Helgason T., Dytham C., Fitter A.H. Relative roles of niche and neutral processes in structuring a soil microbial community. ISME J. 2010, 4:337-345.
    • (2010) ISME J. , vol.4 , pp. 337-345
    • Dumbrell, A.J.1    Nelson, M.2    Helgason, T.3    Dytham, C.4    Fitter, A.H.5
  • 8
    • 79954752208 scopus 로고    scopus 로고
    • Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing
    • Dumbrell A.J., Ashton P.D., Aziz N., Feng G., Nelson M., Dytham C., Fitter A.H., Helgason T. Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing. New Phytol. 2011, 190:794-804.
    • (2011) New Phytol. , vol.190 , pp. 794-804
    • Dumbrell, A.J.1    Ashton, P.D.2    Aziz, N.3    Feng, G.4    Nelson, M.5    Dytham, C.6    Fitter, A.H.7    Helgason, T.8
  • 9
    • 33144476918 scopus 로고    scopus 로고
    • Microbial biomass and activity under oxic and anoxic conditions as affected by nitrate additions
    • Dyckmans J., Flessa H., Lipski A., Potthoff M., Beese F. Microbial biomass and activity under oxic and anoxic conditions as affected by nitrate additions. J.Plant Nutr. Soil Sci. 2006, 169:108-115.
    • (2006) J.Plant Nutr. Soil Sci. , vol.169 , pp. 108-115
    • Dyckmans, J.1    Flessa, H.2    Lipski, A.3    Potthoff, M.4    Beese, F.5
  • 10
    • 0037270927 scopus 로고    scopus 로고
    • Influence of drying-rewetting frequency on soil bacterial community structure
    • Fierer N., Schimel J.P., Holden P.A. Influence of drying-rewetting frequency on soil bacterial community structure. Microb. Ecol. 2003, 45:63-71.
    • (2003) Microb. Ecol. , vol.45 , pp. 63-71
    • Fierer, N.1    Schimel, J.P.2    Holden, P.A.3
  • 12
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Grobkopf R., Stubner S., Liesack W. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl. Environ. Microbiol. 1998, 64:4983-4989.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4983-4989
    • Grobkopf, R.1    Stubner, S.2    Liesack, W.3
  • 13
    • 0000006498 scopus 로고
    • Diversity and evenness: a unifying notation and its consequences
    • Hill M.O. Diversity and evenness: a unifying notation and its consequences. Ecology 1973, 54:427-473.
    • (1973) Ecology , vol.54 , pp. 427-473
    • Hill, M.O.1
  • 14
    • 78649337295 scopus 로고    scopus 로고
    • Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile
    • Höfferle Š., Nicol G.W., Pal L., Hacin J., Prosser J.I., Mandić-Mulec I. Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile. FEMS Microbiol. Ecol. 2010, 74:302-315.
    • (2010) FEMS Microbiol. Ecol. , vol.74 , pp. 302-315
    • Höfferle, Š.1    Nicol, G.W.2    Pal, L.3    Hacin, J.4    Prosser, J.I.5    Mandić-Mulec, I.6
  • 16
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen P.H. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl. Environ. Microbiol. 2006, 72:1719-1728.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 17
    • 69249149308 scopus 로고    scopus 로고
    • Wetland restoration and methanogenesis: the activity of microbial populations and competition for substrates at different temperatures
    • Jerman V., Metje M., Mandić-Mulec I., Frenzel P. Wetland restoration and methanogenesis: the activity of microbial populations and competition for substrates at different temperatures. Biogeosciences 2009, 6:1127-1138.
    • (2009) Biogeosciences , vol.6 , pp. 1127-1138
    • Jerman, V.1    Metje, M.2    Mandić-Mulec, I.3    Frenzel, P.4
  • 23
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Wiley, New York, E. Stackebrant, M. Goodfellow (Eds.)
    • Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, New York. E. Stackebrant, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 26
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C., Hamady M., Knight R. UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinform. 2006, 7:371.
    • (2006) BMC Bioinform. , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 27
    • 84455199714 scopus 로고    scopus 로고
    • Biodiversity and ecosystem services: a multilayered relationship
    • Mace G.M., Norris K., Fitter A.H. Biodiversity and ecosystem services: a multilayered relationship. Trends Ecol. Evol. 2012, 27:19-26.
    • (2012) Trends Ecol. Evol. , vol.27 , pp. 19-26
    • Mace, G.M.1    Norris, K.2    Fitter, A.H.3
  • 36
    • 34548262724 scopus 로고    scopus 로고
    • 2-compensation point, carboxylation efficiency, and net photosynthesis) of timothy grass (Phleum pratense L.) is affected by elevated carbon dioxide in post-volcanic mofette areas
    • 2-compensation point, carboxylation efficiency, and net photosynthesis) of timothy grass (Phleum pratense L.) is affected by elevated carbon dioxide in post-volcanic mofette areas. Environ. Exp. Bot. 2007, 61:41-48.
    • (2007) Environ. Exp. Bot. , vol.61 , pp. 41-48
    • Pfanz, H.1    Vodnik, D.2    Wittmann, C.3    Aschan, G.4    Batič, F.5    Turk, B.6    Maček, I.7
  • 37
    • 77951998412 scopus 로고    scopus 로고
    • The impact of agricultural soil erosion on biogeochemical cycling
    • Quinton J.N., Govers G., van Oost K., Bardgett R.D. The impact of agricultural soil erosion on biogeochemical cycling. Nat. Geosci. 2010, 3:311-314.
    • (2010) Nat. Geosci. , vol.3 , pp. 311-314
    • Quinton, J.N.1    Govers, G.2    van Oost, K.3    Bardgett, R.D.4
  • 38
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation For Statistical Computing, Vienna, Austria, URL:
    • R: a Language and Environment for Statistical Computing 2007, R Development Core Team, R Foundation For Statistical Computing, Vienna, Austria, URL:. http://www.R-project.org.
    • (2007) R: a Language and Environment for Statistical Computing
  • 41
    • 77949495216 scopus 로고    scopus 로고
    • Ahigh-throughput DNA sequence aligner for microbial ecology studies
    • Schloss P.D. Ahigh-throughput DNA sequence aligner for microbial ecology studies. PloS One 2009, 4:e8230.
    • (2009) PloS One , vol.4
    • Schloss, P.D.1
  • 42
    • 0003563081 scopus 로고    scopus 로고
    • International Organization for Standardization, Genève, Switzerland,SIST ISO 10390
    • SIST ISO 10390 Soil Quality - Determination of pH 2006, International Organization for Standardization, Genève, Switzerland.
    • (2006) Soil Quality - Determination of pH
  • 44
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • Wiley, Chichester, England, E. Stackebrandt, M. Goodfellow (Eds.)
    • Stahl D.A., Amann R. Development and application of nucleic acid probes. Nucleic Acid Techniques in Bacterial Systematics 1991, 205-248. Wiley, Chichester, England. E. Stackebrandt, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 50
    • 33745249125 scopus 로고    scopus 로고
    • 2 concentration in a natural carbon dioxide spring and some related plant responses
    • 2 concentration in a natural carbon dioxide spring and some related plant responses. Geoderma 2006, 133:309-319.
    • (2006) Geoderma , vol.133 , pp. 309-319
    • Vodnik, D.1    Kastelec, D.2    Pfanz, H.3    Maček, I.4    Turk, B.5
  • 52
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73:5261-5267.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 53
    • 34250710642 scopus 로고    scopus 로고
    • World Reference Base for Soil Resources 2006. A Framework for International Classification, Correlation and Communication
    • FAO, Rome, 142 pp.
    • WBR World Reference Base for Soil Resources 2006. A Framework for International Classification, Correlation and Communication. World Soil Resources Reports 2006, vol. 103. FAO, Rome, 142 pp. second ed.
    • (2006) World Soil Resources Reports , vol.103
  • 55
    • 33745320006 scopus 로고    scopus 로고
    • Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi
    • Yamada T., Sekiguchi Y., Hanada S., Imachi H., Ohashi A., Harada H., Kamagata Y. Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi. Int. J. Syst. Evol. Microbiol. 2006, 56:1331-1340.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 1331-1340
    • Yamada, T.1    Sekiguchi, Y.2    Hanada, S.3    Imachi, H.4    Ohashi, A.5    Harada, H.6    Kamagata, Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.