메뉴 건너뛰기




Volumn 13, Issue 21, 2013, Pages 3109-3116

Proteomics of CaCO3 biomineral-associated proteins: How to properly address their analysis

Author keywords

Animal proteomics; Biomineralization; Bleaching treatment; Calcifying extracellular matrix; Protein identification; Sample preparation

Indexed keywords

CALCIUM CARBONATE; PROTEIN;

EID: 84887127717     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201300162     Document Type: Article
Times cited : (21)

References (25)
  • 2
    • 57349194256 scopus 로고    scopus 로고
    • Molecular aspects of biomineralization of the echinoderm endoskeleton
    • Killian, C. E., Wilt, F. H., Molecular aspects of biomineralization of the echinoderm endoskeleton. Chem. Rev. 2008, 108, 4463-4474.
    • (2008) Chem. Rev. , vol.108 , pp. 4463-4474
    • Killian, C.E.1    Wilt, F.H.2
  • 3
    • 35348886006 scopus 로고    scopus 로고
    • Molluscan shell protein: primary structure, origin and evolution
    • Marin, F., Luquet, G., Marie, B., Médakovic, D., Molluscan shell protein: primary structure, origin and evolution. Curr. Top. Dev. Biol. 2008, 80, 209-276.
    • (2008) Curr. Top. Dev. Biol. , vol.80 , pp. 209-276
    • Marin, F.1    Luquet, G.2    Marie, B.3    Médakovic, D.4
  • 4
    • 84887082448 scopus 로고    scopus 로고
    • 'Shellome': proteins involved in mollusk shell biomineralization - diversity, functions
    • Watabe, S., Maeyama, K., Nagasawa, H. (Eds.), Terrapub, Tokyo, Japan
    • Marin, F., Marie, B., Benhamada, S., Silva, P., et al., 'Shellome': proteins involved in mollusk shell biomineralization - diversity, functions, in: Watabe, S., Maeyama, K., Nagasawa, H. (Eds.), Recent Advances in Pearl Research, Terrapub, Tokyo, Japan 2013, pp. 149-166.
    • (2013) Recent Advances in Pearl Research , pp. 149-166
    • Marin, F.1    Marie, B.2    Benhamada, S.3    Silva, P.4
  • 5
    • 77953573499 scopus 로고    scopus 로고
    • Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix
    • Mann, K., Wilt, F. H., Poustka, A. J., Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix. Proteome Sci. 2010, 8, 33.
    • (2010) Proteome Sci. , vol.8 , pp. 33
    • Mann, K.1    Wilt, F.H.2    Poustka, A.J.3
  • 6
    • 78049363410 scopus 로고    scopus 로고
    • Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell
    • Marie, B., Marie, A., Jackson, D., Dubost, L. et al., Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell. Proteome Sci. 2010, 8, 54.
    • (2010) Proteome Sci. , vol.8 , pp. 54
    • Marie, B.1    Marie, A.2    Jackson, D.3    Dubost, L.4
  • 7
    • 77958533593 scopus 로고    scopus 로고
    • Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization
    • Joubert, C., Piquemal, D., Marie, B., Manchon, L. et al., Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization. BMC Genomics 2010, 11, 613.
    • (2010) BMC Genomics , vol.11 , pp. 613
    • Joubert, C.1    Piquemal, D.2    Marie, B.3    Manchon, L.4
  • 8
    • 79953711121 scopus 로고    scopus 로고
    • Coupling proteomics and transcriptomics for the identification of novel and variant forms of mollusc shell proteins: a study with P. margaritifera
    • Berland, S., Marie, A., Duplat, D., Milet, C. et al., Coupling proteomics and transcriptomics for the identification of novel and variant forms of mollusc shell proteins: a study with P. margaritifera. Chembiochem. 2011, 12, 950-961.
    • (2011) Chembiochem. , vol.12 , pp. 950-961
    • Berland, S.1    Marie, A.2    Duplat, D.3    Milet, C.4
  • 9
    • 84862198201 scopus 로고    scopus 로고
    • In-depth proteomic analysis of mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea
    • Mann, K., Edsinger-Gonzales, E., Mann, M., In-depth proteomic analysis of mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea. Proteome Sci. 2012, 10, 28.
    • (2012) Proteome Sci. , vol.10 , pp. 28
    • Mann, K.1    Edsinger-Gonzales, E.2    Mann, M.3
  • 10
    • 84871395649 scopus 로고    scopus 로고
    • Different secretory repertoires control the biomineralization processes of prism and nacre deposition of the pearl oyster shell
    • Marie, B., Joubert, C., Tayalé, A., Zanella-Cléon, I. et al., Different secretory repertoires control the biomineralization processes of prism and nacre deposition of the pearl oyster shell. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 20986-20991.
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. 20986-20991
    • Marie, B.1    Joubert, C.2    Tayalé, A.3    Zanella-Cléon, I.4
  • 11
    • 84867088834 scopus 로고    scopus 로고
    • The oyster genome reveals stress adaptation and complexity of shell formation
    • Zhang, G., Fang, X., Guo, X., Li, L. et al., The oyster genome reveals stress adaptation and complexity of shell formation. Nature 2012, 490, 49-54.
    • (2012) Nature , vol.490 , pp. 49-54
    • Zhang, G.1    Fang, X.2    Guo, X.3    Li, L.4
  • 12
    • 84872025590 scopus 로고    scopus 로고
    • The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties
    • Marie, B., Jackson, D. J., Ramos-Silva, P., Zanella-Cléon, I. et al., The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties. FEBS J. 2013, 280, 214-232.
    • (2013) FEBS J. , vol.280 , pp. 214-232
    • Marie, B.1    Jackson, D.J.2    Ramos-Silva, P.3    Zanella-Cléon, I.4
  • 13
    • 84883230158 scopus 로고    scopus 로고
    • The skeletal organic matrix of the coral Acropora millepora: the evolution of calcification by cooption and domain shuffling
    • Ramos-Silva, P., Kaandorp, J., Huisman, L., Marie, B. et al., The skeletal organic matrix of the coral Acropora millepora: the evolution of calcification by cooption and domain shuffling. Mol. Biol. Evol. 2013, 30, 2099-2112.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 2099-2112
    • Ramos-Silva, P.1    Kaandorp, J.2    Huisman, L.3    Marie, B.4
  • 14
    • 84874620937 scopus 로고    scopus 로고
    • Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata
    • Drake, J. L., Mass, T., Haramaty, L., Zelzion, E. et al., Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 3788-3793.
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 3788-3793
    • Drake, J.L.1    Mass, T.2    Haramaty, L.3    Zelzion, E.4
  • 15
    • 84878994835 scopus 로고    scopus 로고
    • Biomineralization toolkit": the importance of sample cleaning prior to the characterization of biomineral proteomes
    • Ramos-Silva, P., Marin, F., Kaandorp, J., Marie, B., "Biomineralization toolkit": the importance of sample cleaning prior to the characterization of biomineral proteomes. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, E2144-E2146.
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110
    • Ramos-Silva, P.1    Marin, F.2    Kaandorp, J.3    Marie, B.4
  • 16
    • 55949086806 scopus 로고    scopus 로고
    • Sparc protein is required for normal growth of zebrafish otoliths
    • Kang, Y-J., Stevenson, A. K., Yau, P. M., Kollmar, R., Sparc protein is required for normal growth of zebrafish otoliths. JARO 2007, 9, 436-451.
    • (2007) JARO , vol.9 , pp. 436-451
    • Kang, Y.-J.1    Stevenson, A.K.2    Yau, P.M.3    Kollmar, R.4
  • 17
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • Emanuelsson, O., Brunak, S., von Heijne, G., Nielsen, H., Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2007, 2, 953-971.
    • (2007) Nat. Protoc. , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 18
    • 84859261132 scopus 로고    scopus 로고
    • The eggshell: structure, composition and mineralization
    • Hincke, M. T., Nys, Y., Gautron, J., Mann, K. et al., The eggshell: structure, composition and mineralization. Front. Biosci. 2012, 17, 1266-1280.
    • (2012) Front. Biosci. , vol.17 , pp. 1266-1280
    • Hincke, M.T.1    Nys, Y.2    Gautron, J.3    Mann, K.4
  • 19
    • 33744985254 scopus 로고    scopus 로고
    • Anisotropic lattice distorsions in biogenic calcite induced by intra-crystalline organic molecules
    • Pokroy, B., Fitch, A.N., Marin, F., Kapon, M. et al., Anisotropic lattice distorsions in biogenic calcite induced by intra-crystalline organic molecules. J. Struct. Biol. 2006, 155, 96-103.
    • (2006) J. Struct. Biol. , vol.155 , pp. 96-103
    • Pokroy, B.1    Fitch, A.N.2    Marin, F.3    Kapon, M.4
  • 20
    • 84875043142 scopus 로고    scopus 로고
    • Analysis of the proteinaceous components of the organic matrix of calcitic sclerites from the soft coral Sinularia sp
    • Rahman, M. A., Shinjo, R., Oomori, T., Wörheide, G., Analysis of the proteinaceous components of the organic matrix of calcitic sclerites from the soft coral Sinularia sp. PLoS One 2013, 8, e58781.
    • (2013) PLoS One , vol.8
    • Rahman, M.A.1    Shinjo, R.2    Oomori, T.3    Wörheide, G.4
  • 21
    • 84866148380 scopus 로고    scopus 로고
    • Proteomic analysis from the mineralized radular teeth of the giant Pacific chiton, Cryptochiton stelleri (Mollusca)
    • Nemoto, M., Wang, Q., Li, D., Pan, S. et al., Proteomic analysis from the mineralized radular teeth of the giant Pacific chiton, Cryptochiton stelleri (Mollusca). Proteomics 2012, 12, 2890-2894.
    • (2012) Proteomics , vol.12 , pp. 2890-2894
    • Nemoto, M.1    Wang, Q.2    Li, D.3    Pan, S.4
  • 22
    • 0028993550 scopus 로고
    • Microbial endoliths in skeleton of live and dead corals: Porites lobata (Moorea, French Polynesia)
    • Le Campion-Alsumard, T., Golubic, S., Hutchings, P., Microbial endoliths in skeleton of live and dead corals: Porites lobata (Moorea, French Polynesia). Mar. Ecol. Prog. Ser. 1995, 117, 149-157.
    • (1995) Mar. Ecol. Prog. Ser. , vol.117 , pp. 149-157
    • Le Campion-Alsumard, T.1    Golubic, S.2    Hutchings, P.3
  • 23
    • 0027881022 scopus 로고
    • Effects of bleaching on organic and mineral phases in biogenic carbonates
    • Gaffey, S. J., Bronniman, C. E., Effects of bleaching on organic and mineral phases in biogenic carbonates. J. Sed. Petrol. 1993, 63, 752-754.
    • (1993) J. Sed. Petrol. , vol.63 , pp. 752-754
    • Gaffey, S.J.1    Bronniman, C.E.2
  • 24
    • 84862501755 scopus 로고    scopus 로고
    • Proteomic strategy for identifying mollusc shell proteins using mild chemical degradation and trypsin digestion of insoluble organic shell matrix: a pilot study on Haliotis tuberculata
    • Bédouet, L., Marie, A., Berland, S., Marie, B. et al., Proteomic strategy for identifying mollusc shell proteins using mild chemical degradation and trypsin digestion of insoluble organic shell matrix: a pilot study on Haliotis tuberculata. Mar. Biotechnol. 2011, 14, 446-458.
    • (2011) Mar. Biotechnol. , vol.14 , pp. 446-458
    • Bédouet, L.1    Marie, A.2    Berland, S.3    Marie, B.4
  • 25
    • 84867825055 scopus 로고    scopus 로고
    • Analysis of low complex region peptides derived from mollusc shell matrix proteins using CID, high-energy collisional dissociation, and electron transfer dissociation on an LTQ-Orbitrap: implications for peptide to spectrum match
    • Marie, A., Alves, S., Marie, B., Dubost, L. et al., Analysis of low complex region peptides derived from mollusc shell matrix proteins using CID, high-energy collisional dissociation, and electron transfer dissociation on an LTQ-Orbitrap: implications for peptide to spectrum match. Proteomics 2012, 12, 3069-3075.
    • (2012) Proteomics , vol.12 , pp. 3069-3075
    • Marie, A.1    Alves, S.2    Marie, B.3    Dubost, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.