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Volumn 27, Issue 17, 2011, Pages 2435-2436

MethylCoder: Software pipeline for bisulte-treated sequences

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA; HYDROGEN SULFITE; SULFITE;

EID: 80051921569     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr394     Document Type: Article
Times cited : (59)

References (10)
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    • Chen, P.1
  • 2
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • Cokus,S.J. et al. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 452, 215-219.
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    • Cokus, S.J.1
  • 3
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    • BRAT: bisulte-treated reads analysis tool
    • Harris,E.Y. et al. (2010) BRAT: bisulte-treated reads analysis tool. Bioinformatics, 26, 572-573.
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    • Harris, E.Y.1
  • 4
    • 77957276865 scopus 로고    scopus 로고
    • Introduction into the analysis of high-throughput-sequencing based epigenome data
    • Huss,M. (2010) Introduction into the analysis of high-throughput-sequencing based epigenome data. Brief Bioinform, 11, 512-523.
    • (2010) Brief Bioinform , vol.11 , pp. 512-523
    • Huss, M.1
  • 5
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efcient alignment of short DNA sequences to the human genome
    • Langmead,B. et al. (2009) Ultrafast and memory-efcient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1
  • 6
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: a exible aligner and methylation caller for Bisulte-Seq applications
    • Kreuger,F. and Andrews,S. (2011) Bismark: a exible aligner and methylation caller for Bisulte-Seq applications. Bioinformatics, 27, 1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Kreuger, F.1    Andrews, S.2
  • 7
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    • The Sequence alignment/map (SAM) format and SAMtools
    • Li,H. et al. (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
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    • Li, H.1
  • 9
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • Wu,T.D. and Nacu,S. (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics, 26, 873-881.
    • (2010) Bioinformatics , vol.26 , pp. 873-881
    • Wu, T.D.1    Nacu, S.2
  • 10
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    • BSMAP: whole genome bisulte sequence MAPping program
    • Xi,Y. and Li,W. (2009) BSMAP: whole genome bisulte sequence MAPping program. BMC Bioinformatics, 10, 232.
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    • Xi, Y.1    Li, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.