Spelaeicoccus albus gen. nov., sp. nov., an actinobacterium isolated from a natural cave

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 11, 2013, Pages 3958-3963

  Lee, Soon Dong ^a  

^a Jeju National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA; DIAMINOPIMELIC ACID; FATTY ACID; GLYCOLIPID; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; PHOSPHOLIPID; RNA 16S;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM ISOLATION; BREVIBACTERIACEAE; BREVIBACTERIUM; BREVIBACTERIUM SAMYANGENSE; CAVE; CHEMOTAXONOMY; GENE CLUSTER; GENE SEQUENCE; GENETIC SIMILARITY; LIPID COMPOSITION; NEW GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOIL MICROFLORA; SPELAEICOCCUS ALBUS; TAXONOMY;

EID: 84887036331     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.050732-0     Document Type: Article

References (28)

1. Breed, R. S. (1953). The families developed from Bacteriaceae Cohn with a description of the family Brevibacteriaceae Breed, 1953. VI Congr Int Microbiol Roma 1, 10-15.
2. Busse, H.-J. (2012). Order Micrococcales. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 5, pp. 569-570. Edited by M. Goodfellow, P. Kämpfer, H.-J. Busse, M. E. Trujillo, K. Suzuki, W. Ludwig & W. B. Whitman. New York: Springer.
3. Collins, M. D., Jones, D., Keddie, R. M. & Sneath, P. H. A. (1980). Reclassification of Chromobacterium iodinum (Davis) in a redefined genus Brevibacterium (Breed) as Brevibacterium iodinum nom. rev., comb. nov. J Gen Microbiol 120, 1-10.
4. Cui, Y., Kang, M.-S., Woo, S.-G., Jin, L., Kim, K. K., Park, J., Lee, M. & Lee, S.-T. (2013). Brevibacterium daeguense sp. nov. a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture. 63, 152-157.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
7. Goodfellow, M. & Trujillo, M. E. (2012). Genus Brevibacterium. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 5, pp. 685-700. Edited by M. Goodfellow, P. Kämpfer, H.-J. Busse, M. E. Trujillo, K. Suzuki, W. Ludwig & W. B. Whitman. New York: Springer.
8. Heyrman, J., Verbeeren, J., Schumann, P., Devos, J., Swings, J. & De Vos, P. (2004). Brevibacterium picturae sp. nov., isolated from a damaged mural painting at the Saint-Catherine chapel (Castle Herberstein, Austria). Int J Syst Evol Microbiol 54, 1537-1541.
9. Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P., Ward, J. M. & Schrempf, H. (editors) (1985). Genetic Manipulation of Streptomyces. A Laboratory Manual. Norwich: The John Innes Foundation.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
11. Kampfer, P., Schafer, J., Lodders, N. & Busse, H. J. (2010). Brevibacterium sandarakinum sp. nov., isolated from a wall of an indoor environment. Int J Syst Evol Microbiol 60, 909-913.
12. Kim, J., Srinivasan, S., You, T., Bang, J. J., Park, S. & Lee, S. S. (2013). Brevibacterium ammoniilyticum sp. nov., an ammonia-degrading bacterium isolated from sludge of a wastewater treatment plant. Int J Syst Evol Microbiol 63, 1111-1118.
13. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
14. Kumar, A., Ince, I. A., Kati, A. & Chakraborty, R. (2013). Brevibacterium siliguriense sp. nov., a facultatively oligotrophic bacterium isolated from river water. Int J Syst Evol Microbiol 63, 511-515.
15. Lee, S. D. (2006). Brevibacterium samyangense sp. nov., an actinomycete isolated from a beach sediment. Int J Syst Evol Microbiol 56, 1889-1892.
16. Manaia, C. M. & Moore, E. R. B. (2002). Pseudomonas thermotolerans sp. nov., a thermotolerant species of the genus Pseudomonas sensu stricto. Int J Syst Evol Microbiol 52, 2203-2209.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
19. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 188, 221-233.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
22. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis. nov. Int J Syst Bacteriol 47, 479-491.
23. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
24. Tang, S.-K., Wang, Y., Schumann, P., Stackebrandt, E., Lou, K., Jiang, C.-L., Xu, L.-H. & Li, W.-J. (2008). Brevibacterium album sp. nov., a novel actinobacterium isolated from a saline soil in China. Int J Syst Evol Microbiol 58, 574-577.
25. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
26. Tonouchi, A., Kitamura, K. & Fujita, T. (2013). Brevibacterium yomogidense sp. nov., isolated from a soil conditioner made from poultry manure. Int J Syst Evol Microbiol 63, 516-520.
27. Vaz-Moreira, I., Nobre, M. F., Ferreira, A. C. S., Schumann, P., Nunes, O. C. & Manaia, C. M. (2008). Humibacter albus gen. nov., sp. nov., isolated from sewage sludge compost. Int J Syst Evol Microbiol 58, 1014-1018.
28. Zhi, X.-Y., Li, W.-J. & Stackebrandt, E. (2009). An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59, 589-608.