Brevibacterium ammoniilyticum sp. nov., an ammonia-degrading bacterium isolated from sludge of a wastewater treatment plant

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART3, 2013, Pages 1111-1118

  Kim, Jinsoo ^a   Srinivasan, Sathiyaraj ^a   You, Taek ^b   Bang, John J ^c   Park, Sujeong ^d   Lee, Sang Seob ^a  

^a Kyonggi University   (South Korea)

^b CAMPBELL UNIVERSITY   (United States)

^c NORTH CAROLINA CENTRAL UNIVERSITY   (United States)

^d National Institute of Environmental Research   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; CARDIOLIPIN; CATALASE; FATTY ACID; GLYCOLIPID; MENAQUINONE; METHANOL; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S;

ARTICLE; BACTERIAL CELL WALL; BACTERIUM ISOLATION; BREVIBACTERIUM AMMONIILYTICUM; BREVIBACTERIUM SANGUINIS; DNA DNA HYBRIDIZATION; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PRIORITY JOURNAL; RNA ANALYSIS; RNA SEQUENCE; SLUDGE; WASTE WATER TREATMENT PLANT;

AMMONIA; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BREVIBACTERIUM; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; VITAMIN K 2; WASTE WATER;

EID: 84874829575     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.039305-0     Document Type: Article

References (42)

1. Atlas, R. M. (1993). Handbook of Microbiological Media. Edited by L.C. Parks. Boca Raton, FL: CRC Press.
2. Bhadra, B., Raghukumar, C., Pindi, P. K. & Shivaji, S. (2008). Brevibacterium oceani sp. nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean. Int J Syst Evol Microbiol 58, 57-60.
3. Breed, R. S. (1953). The Brevibacteriaceae fam. nov. of order Eubacteriales. Riass Commun VI Congr Int Microbiol Roma 1, 13-14.
4. Brown, A. E. (2008). Benson's Microbiological Applications: Laboratory Manual in General Microbiology, 10th edn. Boston, MA: McGraw-Hill, Inc.
5. Cai, J. & Collins, M. D. (1994). Phylogenetic analysis of species of the meso-diaminopimelic acid-containing genera Brevibacterium and Dermabacter. Int J Syst Bacteriol 44, 583-585.
6. Cappuccino, J. G. & Sherman, N. (2010). Microbiology: A Laboratory Manual, 9th edn. San Francisco: Benjamin Cummings. pp. 69-74 & 161-164.
7. Collins, M. D. (2006). The Genus Brevibacterium. In Prokaryotes, vol. 3, pp. 1013-1019. Edited by M Dworkin, S Falkow, E Rosenberg, K.-H Schleifer & E Stackebrandt. New York: Springer.
8. Collins, M. D., Goodfellow, M. & Minnikin, D. E. (1979). Isoprenoid quinones in the classification of coryneform and related bacteria. J Gen Microbiol 110, 127-136.
9. Collins, M. D., Jones, D., Keddie, R. M. & Sneath, P. H. A. (1980). Reclassification of Chromobacterium iodinum (Davis) in a redefined genus Brevibacterium (Breed) as Brevibacterium iodinum nom. rev.; comb. nov. J Gen Microbiol 120, 1-10.
10. Collins, M. D., Farrow, J. A. E., Goodfellow, M. & Minnikin, D. E. (1983). Brevibacterium casei sp. nov. and Brevibacterium epidermidis sp. nov. Syst Appl Microbiol 4, 388-395.
11. DSMZ (2001). Catalogue of Strains, 7th edn. Braunschweig: Deutsche Sammlung von Mikroorganismen und Zellkulturen.
12. Ezaki, T. & Suzuki, S. (1982). Achromopeptidase for lysis of anaerobic gram-positive cocci. J Clin Microbiol 16, 844-846.
13. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
14. Felsenstein, J. (1985). Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
15. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
16. Frank, J. A., Reich, C. I., Sharma, S., Weisbaum, J. S., Wilson, B. A. & Olsen, G. J. (2008). Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol 74, 2461-2470.
17. Gavrish, E. Iu., Krauzova, V. I., Potekhina, N. V., Karasev, S. G., Plotnikova, E. G., Altyntseva, O. V., Korosteleva, L. A. & Evtushenko, L. I. (2004). [Three new species of brevibacteria-Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. and Brevibacterium permense sp. nov.] Mikrobiologiia 73, 218-225 (in Russian).
18. Gruner, E., Pfyffer, G. E. & von Graevenitz, A. (1993). Characterization of Brevibacterium spp. from clinical specimens. J Clin Microbiol 31, 1408-1412.
19. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
20. Hayat, M. A. & Miller, S. E. (1990). Negative Staining: Applications and Methods. New York: McGraw-Hill Publishing Co.
21. Heyrman, J., Verbeeren, J., Schumann, P., Devos, J., Swings, J. & De Vos, P. (2004). Brevibacterium picturae sp. nov., isolated from a damaged mural painting at the Saint-Catherine chapel (Castle Herberstein, Austria). Int J Syst Evol Microbiol 54, 1537-1541.
22. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
23. Ivanova, E. P., Christen, R., Alexeeva, Y. V., Zhukova, N. V., Gorshkova, N. M., Lysenko, A. M., Mikhailov, V. V. & Nicolau, D. V. (2004). Brevibacterium celere sp. nov., isolated from degraded thallus of a brown alga. Int J Syst Evol Microbiol 54, 2107-2111.
24. Jones, D. & Keddie, R. M. (1986). Genus Brevibacterium. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1301-1313. Edited by P. H. A. Sneath, N. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
25. Kä mpfer, P., Schä fer, J., Lodders, N. & Busse, H.-J. (2010). Brevibacterium sandarakinum sp. nov., isolated from a wall of an indoor environment. Int J Syst Evol Microbiol 60, 909-913.
26. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
27. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
28. Lee, S. D. (2008). Brevibacterium marinum sp. nov., isolated from seawater. Int J Syst Evol Microbiol 58, 500-504.
29. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
30. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
31. Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88, 200-204.
32. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
33. Pascual, C. & Collins, M. D. (1999). Brevibacterium avium sp. nov., isolated from poultry. Int J Syst Bacteriol 49, 1527-1530.
34. Roux, V. & Raoult, D. (2009). Brevibacterium massiliense sp. nov., isolated from a human ankle discharge. Int J Syst Evol Microbiol 59, 1960-1964.
35. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
36. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
37. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
38. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
39. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
40. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
41. Wauters, G., Haase, G., Avesani, V., Charlier, J., Janssens, M., Van Broeck, J. & Delmée, M. (2004). Identification of a novel Brevibacterium species isolated from humans and description of Brevibacterium sanguinis sp. nov. J Clin Microbiol 42, 2829-2832.
42. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.