Quantum process tomography quantifies coherence transfer dynamics in vibrational exciton

Journal of Physical Chemistry B

Volumn 117, Issue 43, 2013, Pages 13631-13638

  Chuntonov, Lev ^a   Ma, Jianqiang ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COHERENCE TRANSFER; DISSIPATIVE QUANTUM SYSTEMS; QUANTUM PROCESS TOMOGRAPHY; RELAXATION MECHANISM; SCIENTIFIC DISCIPLINE; SPECTROSCOPIC SIGNATURES; TWO-DIMENSIONAL INFRARED SPECTROSCOPY; VIBRATIONAL EXCITONS;

DYNAMICS; INFRARED SPECTROSCOPY; KETONES; QUANTUM ELECTRONICS; QUANTUM OPTICS; TOMOGRAPHY;

EXCITONS;

ARTICLE; QUANTUM THEORY; TOMOGRAPHY; VIBRATION;

QUANTUM THEORY; TOMOGRAPHY; VIBRATION;

EID: 84887035007     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp4075493     Document Type: Article

References (59)

1. Fleming, G.; Huelga, S.; Plenio, M. Focus on Quantum Effects and Noise in Biomolecules New J. Phys. 2011, 13, 115002
2. Hayes, D.; Griffin, G. B.; Engel, G. S. Engineering Coherence among Excited States in Synthetic Heterodimer Systems Science 2013, 340, 1431-1434
3. Scholes, G. D. Quantum-Coherent Electronic Energy Transfer: Did Nature Think of It First? J. Phys. Chem. Lett. 2010, 1, 2-8
4. Collini, E.; Scholes, G. D. Coherent Intrachain Energy Migration in a Conjugated Polymer at Room Temperature Science 2009, 323, 369-373
5. Fidler, A. F.; Caram, J. R.; Hayes, D.; Engel, G. S. Towards a Coherent Picture of Excitonic Coherence in the Fenna-Matthews-Olson Complex J. Phys. B 2012, 45, 154013
6. Hildner, R.; Brinks, D.; Nieder, J. B.; Cogdell, R. J.; van Hulst, N. F. Quantum Coherent Energy Transfer over Varying Pathways in Single Light-Harvesting Complexes Science 2013, 340, 1448-1451
7. Shapiro, M.; Brumer, P. Principles of the Quantum Control of Molecular Processes; Wiley-VCH: Weinheim, Germany, 2003.
8. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: New York, 1999.
9. Cho, M. Two-Dimensional Optical Spectroscopy; Taylor & Francis: Boca Raton, FL, 2010.
10. Hamm, P.; Zanni, M. T. Concepts and Methods of 2d Infrared Spectroscopy; Cambridge University Press: Cambridge, U. K., 2011.
11. Mukamel, S. Multidimensional Femtosecond Correlation Spectroscopies of Electronic and Vibrational Excitations Annu. Rev. Phys. Chem. 2000, 51, 691-729
12. de Boeij, W. P.; Pshenichnikov, M. S.; Wiersma, D. A. Ultrafast Solvation Dynamics Explored by Femtosecond Photon Echo Spectroscopies Annu. Rev. Phys. Chem. 1998, 49, 99-123
13. Cho, M.; Yu, J.-Y.; Joo, T.; Nagasawa, Y.; Passino, S. A.; Fleming, G. R. The Integrated Photon Echo and Solvation Dynamics J. Phys. Chem. 1996, 100, 11944-11953
14. Khalil, M.; Demirdöven, N.; Tokmakoff, A. Coherent 2d Ir Spectroscopy: Molecular Structure and Dynamics in Solution J. Phys. Chem. A 2003, 107, 5258-5279
15. Kuroda, D. G.; Bauman, J. D.; Challa, J. R.; Patel, D.; Troxler, T.; Das, K.; Arnold, E.; Hochstrasser, R. M. Snapshot of the Equilibrium Dynamics of a Drug Bound to Hiv-1 Reverse Transcriptase Nature Chem. 2013, 5, 1755-4330
16. Kim, Y. S.; Liu, L.; Axelsen, P. H.; Hochstrasser, R. M. 2d Ir Provides Evidence for Mobile Water Molecules in B-Amyloid Fibrils Proc. Nat. Acad. Sci. U. S. A. 2009, 106, 17751-17756
17. Ghosh, A.; Qiu, J.; DeGrado, W. F.; Hochstrasser, R. M. Tidal Surge in the M2 Proton Channel, Sensed by 2d Ir Spectroscopy Proc. Nat. Acad. Sci. U. S. A. 2011, 108, 6115-6120
18. Kim, Y. S.; Hochstrasser, R. M. Chemical Exchange 2d Ir of Hydrogen-Bond Making and Breaking Proc. Nat. Acad. Sci. U. S. A. 2005, 102, 11185-11190
19. Ishikawa, H.; Kwak, K.; Chung, J. K.; Kim, S.; Fayer, M. D. Direct Observation of Fast Protein Conformational Switching Proc. Nat. Acad. Sci. U. S. A. 2008, 105, 8619-8624
20. Maekawa, H.; Ge, N.-H. Picosecond Rotational Interconversion Adjacent to a Cî-O Bond Studied by Two-Dimensional Infrared Spectroscopy J. Phys. Chem. B 2012, 116, 11292-11301
21. Kim, Y. S.; Hochstrasser, R. M. Applications of 2d Ir Spectroscopy to Peptides, Proteins, and Hydrogen-Bond Dynamics J. Phys. Chem. B 2009, 113, 8231-8251
22. Thielges, M. C.; Fayer, M. D. Protein Dynamics Studied with Ultrafast Two-Dimensional Infrared Vibrational Echo Spectroscopy Acc. Chem. Res. 2012, 45, 1866-1874
23. Wong, D. B.; Giammanco, C. H.; Fenn, E. E.; Fayer, M. D. The Dynamics of Isolated Water Molecules in a Sea of Ions in a Room Temperature Ionic Liquid J. Phys. Chem. B 2012, 117, 623-635
24. Xiong, W.; Laaser, J. E.; Mehlenbacher, R. D.; Zanni, M. T. Adding a Dimension to the Infrared Spectra of Interfaces Using Heterodyne Detected 2d Sum-Frequency Generation (Hd 2d Sfg) Spectroscopy Proc. Nat. Acad. Sci. U. S. A. 2011, 108, 20902-20907
25. Chuntonov, L.; Kuroda, D. G.; Ghosh, A.; Ma, J.; Hochstrasser, R. M. Quantum Beats and Coherence Decay in Degenerate States Split by Solvation J. Phys. Chem. Lett. 2013, 4, 1866-1871
26. Hochstrasser, R. M. Electronic Spectra of Organic Molecules Annu. Rev. Phys. Chem. 1966, 17, 457-480
27. Robinson, G. W. Electronic and Vibrational Excitons in Molecular Crystals Annu. Rev. Phys. Chem. 1970, 21, 429-474
28. Skinner, J. L.; Andersen, H. C.; Fayer, M. Theory of Photon Echoes from a Pair of Coupled Two Level Systems: Impurity Dimers and Energy Transfer in Molecular Crystals J. Chem. Phys. 1981, 75, 3195
29. Wertheimer, R.; Silbey, R. On Excitation Transfer and Relaxation Models in Low-Temperature Systems Chem. Phys. Lett. 1980, 75, 243-248
30. Redfield, A. G. On the Theory of Relaxation Processes IBM J. Res. Dev. 1957, 1, 19-31
31. Nitzan, A. Chemical Dynamics in Condensed Phases: Relaxation, Transfer and Reactions in Condensed Molecular Systems; OUP: Oxford, U. K., 2006.
32. Khalil, M.; Demirdoven, N.; Tokmakoff, A. Vibrational Coherence Transfer Characterized with Fourier-Transform 2d Ir Spectroscopy J. Chem. Phys. 2004, 121, 362-373
33. Nee, M. J.; Baiz, C. R.; Anna, J. M.; McCanne, R.; Kubarych, K. J. Multilevel Vibrational Coherence Transfer and Wavepacket Dynamics Probed with Multidimensional Ir Spectroscopy J. Chem. Phys. 2008, 129, 084503-084511
34. Pakoulev, A. V.; Rickard, M. A.; Kornau, K. M.; Mathew, N. A.; Yurs, L. A.; Block, S. B.; Wright, J. C. Mixed Frequency-/Time-Domain Coherent Multidimensional Spectroscopy: Research Tool or Potential Analytical Method? Acc. Chem. Res. 2009, 42, 1310-1321
35. Wright, J. C. Multiresonant Coherent Multidimensional Spectroscopy Annu. Rev. Phys. Chem. 2011, 62, 209-230
36. Baiz, C. R.; Kubarych, K. J.; Geva, E. Molecular Theory and Simulation of Coherence Transfer in Metal Carbonyls and Its Signature on Multidimensional Infrared Spectra J. Phys. Chem. B 2011, 115, 5322-5339
37. Ghosh, A.; Tucker, M. J.; Hochstrasser, R. M. Identification of Arginine Residues in Peptides by 2d-Ir Echo Spectroscopy J. Phys. Chem. A 2011, 115, 9731-9738
38. Park, S.; Ji, M. Ultrafast Vibrational Population Transfer Dynamics in 2-Acetylcyclopentanone Studied by 2d Ir Spectroscopy ChemPhysChem 2011, 12, 799-805
39. Son, H.; Park, K.-H.; Kwak, K.-W.; Park, S.; Cho, M. Ultrafast Intermolecular Vibrational Excitation Transfer from Solute to Solvent: Observation of Intermediate States Chem. Phys. 2013, 422, 37-46
40. Vorobyev, D. Y.; Kuo, C.-H.; Chen, J.-X.; Kuroda, D. G.; Scott, J. N.; Vanderkooi, J. M.; Hochstrasser, R. M. Ultrafast Vibrational Spectroscopy of a Degenerate Mode of Guanidinium Chloride J. Phys. Chem. B 2009, 113, 15382-15391
41. Vorobyev, D. Y.; Kuo, C.-H.; Kuroda, D. G.; Scott, J. N.; Vanderkooi, J. M.; Hochstrasser, R. M. Water-Induced Relaxation of a Degenerate Vibration of Guanidinium Using 2d Ir Echo Spectroscopy J. Phys. Chem. B 2010, 114, 2944-2953
42. Pakoulev, A. V.; Rickard, M. A.; Mathew, N. A.; Kornau, K. M.; Wright, J. C. Frequency-Domain Time-Resolved Four Wave Mixing Spectroscopy of Vibrational Coherence Transfer with Single-Color Excitation J. Phys. Chem. A 2008, 112, 6320-6329
43. King, J. T.; Anna, J. M.; Kubarych, K. J. Solvent-Hindered Intramolecular Vibrational Redistribution Phys. Chem. Chem. Phys. 2011, 13, 5579-5583
44. Kuroda, D. G.; Singh, P. K.; Hochstrasser, R. M. Differential Hydration of Tricyanomethanide Observed by Time Resolved Vibrational Spectroscopy J. Phys. Chem. B 2012, 117, 4354-4364
45. Rubtsov, I. V. Relaxation-Assisted Two-Dimensional Infrared (Ra 2dir) Method: Accessing Distances over 10 Å and Measuring Bond Connectivity Patterns Acc. Chem. Res. 2009, 42, 1385-1394
46. Falvo, C.; Sanda, F.; Mukamel, S. Quasi-Particle Approach to 2d Ir Spectra of Vibrational Excitons in Biomolecules. In Ultrafast Infrared Vibrational Spectroscopy; Fayer, M. D., Ed.; CRC Press: Boca Raton, FL, 2013; pp 405.
47. Ge, N.-H.; Zanni, M. T.; Hochstrasser, R. M. Effects of Vibrational Frequency Correlations on Two-Dimensional Infrared Spectra J. Phys. Chem. A 2001, 106, 962-972
48. Sanda, F.; Mukamel, S. Stochastic Liouville Equations for Coherent Multidimensional Spectroscopy of Excitons J. Phys. Chem. B 2008, 112, 14212-14220
49. Yuen-Zhou, J.; Aspuru-Guzik, A. Quantum Process Tomography of Excitonic Dimers from Two-Dimensional Electronic Spectroscopy. I. General Theory and Application to Homodimers J. Chem. Phys. 2011, 134, 134505
50. Yuen-Zhou, J.; Krich, J. J.; Mohseni, M.; Aspuru-Guzik, A. Quantum State and Process Tomography of Energy Transfer Systems Via Ultrafast Spectroscopy Proc. Nat. Acad. Sci. U. S. A. 2011, 108, 17615-17620
51. Yuen-Zhou, J.; Arias, D. H.; Eisele, D. M.; Steiner, C. P.; Krich, J. J.; Bawendi, M.; Nelson, K. A.; Aspuru-Guzik, A. Coherent Exciton Dynamics in Supramolecular Light-Harvesting Nanotubes Revealed by Ultrafast Quantum Process Tomography Cornell University Library 2013, arXiv:1308.4566
52. Chuang, I. L.; Nielsen, M. Prescription for Experimental Determination of the Dynamics of a Quantum Black Box J. Mod. Opt. 1997, 44, 2455-2467
53. Nielsen, M. A.; Chuang, I. L. Quantum Computation and Quantum Information; Cambridge University Press: Cambridge, U. K., 2010.
54. Ma, X.-S.; Herbst, T.; Scheidl, T.; Wang, D.; Kropatschek, S.; Naylor, W.; Wittmann, B.; Mech, A.; Kofler, J.; Anisimova, E. Quantum Teleportation over 143 Kilometres Using Active Feed-Forward Nature 2012, 489, 269-273
55. Ishizaki, A.; Fleming, G. R. On the Adequacy of the Redfield Equation and Related Approaches to the Study of Quantum Dynamics in Electronic Energy Transfer J. Chem. Phys. 2009, 130, 234110
56. Zanni, M. T.; Ge, N.-H.; Kim, Y. S.; Hochstrasser, R. M. Two-Dimensional Ir Spectroscopy Can Be Designed to Eliminate the Diagonal Peaks and Expose Only the Crosspeaks Needed for Structure Determination Proc. Nat. Acad. Sci. U. S. A. 2001, 98, 11265-11270
57. Hochstrasser, R. M. Two-Dimensional Ir-Spectroscopy: Polarization Anisotropy Effects Chem. Phys. 2001, 266, 273-284
58. Fang, C.; Wang, J.; Kim, Y. S.; Charnley, A. K.; Barber-Armstrong, W.; Smith, A. B.; Decatur, S. M.; Hochstrasser, R. M. Two-Dimensional Infrared Spectroscopy of Isotopomers of an Alanine Rich Alpha-Helix J. Phys. Chem. B 2004, 108, 10415-10427
59. Palmieri, B.; Abramavicius, D.; Mukamel, S. Lindblad Equations for Strongly Coupled Populations and Coherences in Photosynthetic Complexes J. Chem. Phys. 2009, 130, 204512