Quantum beats and coherence decay in degenerate states split by solvation

Journal of Physical Chemistry Letters

Volumn 4, Issue 11, 2013, Pages 1866-1871

  Chuntonov, Lev ^a   Kuroda, Daniel G ^a   Ghosh, Ayanjeet ^a   Ma, Jianqiang ^a   Hochstrasser, Robin M ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

anisotropy; frequency resolved transient grating; quantum beats; solvation dynamics; tricyanomethanide ion; vibrational coherence relaxation

Indexed keywords

ANISOTROPY; DYNAMICS; POLARIZATION; SOLVATION;

FEMTOSECOND TIME SCALE; MULTIDIMENSIONAL SPECTROSCOPY; OSCILLATION PATTERNS; QUANTUM BEAT; SOLVATION DYNAMICS; TRANSIENT GRATING; TRANSIENT GRATING SPECTROSCOPY; VIBRATIONAL COHERENCES;

QUANTUM THEORY;

EID: 84879240128     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz400826a     Document Type: Article

References (49)

1. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: New York, 1995.
2. Hamm, P.; Zanni, M. T. Concepts and Methods of 2D Infrared Spectroscopy; Cambridge University Press: Cambridge, U.K., 2011.
3. Cho, M. Two-Dimensional Optical Spectroscopy; Taylor & Francis: Boca Raton, FL, 2010.
4. Jonas, D. M. Two-Dimensional Femtosecond Spectroscopy Annu. Rev. Phys. Chem. 2003, 54, 425-463
5. Fleming, G.; Huelga, S.; Plenio, M. Focus on Quantum Effects and Noise in Biomolecules New J. Phys. 2011, 13, 115002
6. Hamm, P.; Lim, M.; Hochstrasser, R. M. Vibrational Energy Relaxation of the Cyanide Ion in Water J. Chem. Phys. 1997, 107, 10523-10531
7. Asbury, J. B.; Steinel, T.; Stromberg, C.; Corcelli, S. A.; Lawrence, C. P.; Skinner, J. L.; Fayer, M. D. Water Dynamics: Vibrational Echo Correlation Spectroscopy and Comparison to Molecular Dynamics Simulations J. Phys. Chem. A 2004, 108, 1107-1119
8. Demirdöven, N.; Khalil, M.; Tokmakoff, A. Correlated Vibrational Dynamics Revealed by Two-Dimensional Infrared Spectroscopy Phys. Rev. Lett. 2002, 89, 237401
9. Piryatinski, A.; Chernyak, V.; Mukamel, S. Vibrational-Exciton Relaxation Probed by Three-Pulse Echoes in Polypeptides Chem. Phys. 2001, 266, 285-294
10. Khalil, M.; Demirdoven, N.; Tokmakoff, A. Vibrational Coherence Transfer Characterized with Fourier-Transform 2d IR Spectroscopy J. Chem. Phys. 2004, 121, 362-373
11. Nee, M. J.; Baiz, C. R.; Anna, J. M.; McCanne, R.; Kubarych, K. J. Multilevel Vibrational Coherence Transfer and Wavepacket Dynamics Probed with Multidimensional IR Spectroscopy J. Chem. Phys. 2008, 129, 084503-084511
12. Pakoulev, A. V.; Rickard, M. A.; Mathew, N. A.; Kornau, K. M.; Wright, J. C. Frequency-Domain Time-Resolved Four Wave Mixing Spectroscopy of Vibrational Coherence Transfer with Single-Color Excitation J. Phys. Chem. A 2008, 112, 6320-6329
13. Collini, E.; Scholes, G. D. Coherent Intrachain Energy Migration in a Conjugated Polymer at Room Temperature Science 2009, 323, 369-373
14. Fidler, A. F.; Caram, J. R.; Hayes, D.; Engel, G. S. Towards a Coherent Picture of Excitonic Coherence in the Fenna-Matthews-Olson Complex J. Phys. B 2012, 45, 154013
15. Scholes, G. D. Quantum-Coherent Electronic Energy Transfer: Did Nature Think of It First? J. Phys. Chem. Lett. 2010, 1, 2-8
16. Mukamel, S. Multidimensional Femtosecond Correlation Spectroscopies of Electronic and Vibrational Excitations Annu. Rev. Phys. Chem. 2000, 51, 691-729
17. Hamm, P.; Lim, M.; Hochstrasser, R. M. Structure of the Amide I Band of Peptides Measured by Femtosecond Nonlinear-Infrared Spectroscopy J. Phys. Chem. B 1998, 102, 6123-6138
18. Hamm, P.; Lim, M.; DeGrado, W. F.; Hochstrasser, R. M. The Two-Dimensional IR Nonlinear Spectroscopy of a Cyclic Penta-Peptide in Relation to Its Three-Dimensional Structure Proc. Natl. Acad. Sci. 1999, 96, 2036-2041
19. Kim, Y. S.; Hochstrasser, R. M. Applications of 2D IR Spectroscopy to Peptides, Proteins, and Hydrogen-Bond Dynamics J. Phys. Chem. B 2009, 113, 8231-8251
20. Rubtsov, I. V. Relaxation-Assisted Two-Dimensional Infrared (RA 2D IR) Method: Accessing Distances over 10 Å and Measuring Bond Connectivity Patterns Acc. Chem. Res. 2009, 42, 1385-1394
21. Ghosh, A.; Qiu, J.; DeGrado, W. F.; Hochstrasser, R. M. Tidal Surge in the M2 Proton Channel, Sensed by 2D IR Spectroscopy Proc. Natl. Acad. Sci. 2011, 108, 6115-6120
22. Remorino, A.; Hochstrasser, R. M. Three-Dimensional Structures by Two-Dimensional Vibrational Spectroscopy Acc. Chem. Res. 2012, 45, 1896-1905
23. Kim, Y. S.; Liu, L.; Axelsen, P. H.; Hochstrasser, R. M. 2D IR Provides Evidence for Mobile Water Molecules in b-Amyloid Fibrils Proc. Nat. Acad. Sci. 2009, 106, 17751-17756
24. Thøgersen, J.; Réhault, J.; Odelius, M.; Ogden, T.; Jena, N. K.; Jensen, S. J. K.; Keiding, S. R.; Helbing, J. Hydration Dynamics of Aqueous Nitrate J. Phys. Chem. B 2013, 117, 3376-3388
25. Costard, R.; Greve, C.; Heisler, I. A.; Elsaesser, T. Ultrafast Energy Redistribution in Local Hydration Shells of Phospholipids: A Two-Dimensional Infrared Study J. Phys. Chem. Lett. 2012, 3, 3646-3651
26. Zheng, J.; Kwak, K.; Asbury, J.; Chen, X.; Piletic, I. R.; Fayer, M. D. Ultrafast Dynamics of Solute-Solvent Complexation Observed at Thermal Equilibrium in Real Time Science 2005, 309, 1338-1343
27. Kim, Y. S.; Hochstrasser, R. M. Chemical Exchange 2D IR of Hydrogen-Bond Making and Breaking Proc. Natl. Acad. Sci. 2005, 102, 11185-11190
28. Ghosh, A.; Remorino, A.; Tucker, M. J.; Hochstrasser, R. M. 2D IR Photon Echo Spectroscopy Reveals Hydrogen Bond Dynamics of Aromatic Nitriles Chem. Phys. Lett. 2009, 469, 325-330
29. Maekawa, H.; Ge, N.-H. Picosecond Rotational Interconversion Adjacent to a C=O Bond Studied by Two-Dimensional Infrared Spectroscopy J. Phys. Chem. B 2012, 116, 11292-11301
30. Lee, K.-K.; Park, K.-H.; Joo, C.; Kwon, H.-J.; Han, H.; Ha, J.-H.; Park, S.; Cho, M. Ultrafast Internal Rotational Dynamics of the Azido Group in (4s)-Azidoproline: Chemical Exchange 2D IR Spectroscopic Investigations Chem. Phys. 2012, 396, 23-29
31. Thielges, M. C.; Fayer, M. D. Protein Dynamics Studied with Ultrafast Two-Dimensional Infrared Vibrational Echo Spectroscopy Acc. Chem. Res. 2012, 45, 1866-1874
32. Kuroda, D. G.; Bauman, J. D.; Challa, J. R.; Patel, D.; Troxler, T.; Das, K.; Arnold, E.; Hochstrasser, R. M. Snapshot of the Equilibrium Dynamics of a Drug Bound to Hiv-1 Reverse Transcriptase Nat. Chem. 2013, 5, 1755-4330
33. Middleton, C. T.; Marek, P.; Cao, P.; Chiu, C.-c.; Singh, S.; Woys, A. M.; de Pablo, J. J.; Raleigh, D. P.; Zanni, M. T. Two-Dimensional Infrared Spectroscopy Reveals the Complex Behaviour of an Amyloid Fibril Inhibitor Nat. Chem. 2012, 4, 355-360
34. Vorobyev, D. Y.; Kuo, C.-H.; Chen, J.-X.; Kuroda, D. G.; Scott, J. N.; Vanderkooi, J. M.; Hochstrasser, R. M. Ultrafast Vibrational Spectroscopy of a Degenerate Mode of Guanidinium Chloride J. Phys. Chem. B 2009, 113, 15382-15391
35. Vorobyev, D. Y.; Kuo, C.-H.; Kuroda, D. G.; Scott, J. N.; Vanderkooi, J. M.; Hochstrasser, R. M. Water-Induced Relaxation of a Degenerate Vibration of Guanidinium Using 2D IR Echo Spectroscopy J. Phys. Chem. B 2010, 114, 2944-2953
36. Kuroda, D. G.; Singh, P. K.; Hochstrasser, R. M. Differential Hydration of Tricyanomethanide Observed by Time Resolved Vibrational Spectroscopy J. Phys. Chem. B 2012, 117, 4354-4364
37. Kuroda, D. G.; Hochstrasser, R. M. Polarization Anisotropy Effects for Degenerate Vibrational Levels. In Ultrafast Infrared Vibrational Spectroscopy; Fayer, M. D., Ed.; CRC Press: Boca Raton, FL, 2013.
38. Ghosh, A.; Tucker, M. J.; Hochstrasser, R. M. Identification of Arginine Residues in Peptides by 2D-IR Echo Spectroscopy J. Phys. Chem. A 2011, 115, 9731-9738
39. Kuroda, D. G.; Hochstrasser, R. M. Two-Dimensional Infrared Spectral Signature and Hydration of the Oxalate Dianion J. Chem. Phys. 2011, 135, 204502
40. 4]- Anions in Dye-Sensitized Solar Cells Inorg. Chem. 2011, 50, 11561-11567
41. Hipps, K. W.; Aplin, A. T. The Tricyanomethanide Ion: An Infrared, Raman, and Tunneling Spectroscopy Study Including Isotopic Substitution J. Phys. Chem. 1985, 89, 5459-5464
42. Weidinger, D.; Houchins, C.; Owrutsky, J. C. Vibrational Dynamics of Tricyanomethanide Chem. Phys. Lett. 2012, 525-526, 60-63
43. Cho, M.; Yu, J.-Y.; Joo, T.; Nagasawa, Y.; Passino, S. A.; Fleming, G. R. The Integrated Photon Echo and Solvation Dynamics J. Phys. Chem. 1996, 100, 11944-11953
44. Kwac, K.; Cho, M. Molecular Dynamics Simulation Study of N-Methylacetamide in Water. II. Two-Dimensional Infrared Pump-Probe Spectra J. Chem. Phys. 2003, 119, 2256-2263
45. Kwak, K.; Rosenfeld, D. E.; Fayer, M. D. Taking Apart the Two-Dimensional Infrared Vibrational Echo Spectra: More Information and Elimination of Distortions J. Chem. Phys. 2008, 128, 204505-204510
46. Zanni, M. T.; Ge, N.-H.; Kim, Y. S.; Hochstrasser, R. M. Two-Dimensional IR Spectroscopy Can Be Designed to Eliminate the Diagonal Peaks and Expose Only the Crosspeaks Needed for Structure Determination Proc. Natl. Acad. Sci. 2001, 98, 11265-11270
47. Ge, N.-H.; Zanni, M. T.; Hochstrasser, R. M. Effects of Vibrational Frequency Correlations on Two-Dimensional Infrared Spectra J. Phys. Chem. A 2001, 106, 962-972
48. Hochstrasser, R. M. Two-Dimensional IR-Spectroscopy: Polarization Anisotropy Effects Chem. Phys. 2001, 266, 273-284
49. Baiz, C. R.; Kubarych, K. J.; Geva, E. Molecular Theory and Simulation of Coherence Transfer in Metal Carbonyls and Its Signature on Multidimensional Infrared Spectra J. Phys. Chem. B 2011, 115, 5322-5339