메뉴 건너뛰기




Volumn 3, Issue 1, 2012, Pages

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84887030980     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-3-18     Document Type: Article
Times cited : (29)

References (47)
  • 1
    • 84861792265 scopus 로고    scopus 로고
    • Is fever after infection part of the illness or the cure?
    • Gardner J: Is fever after infection part of the illness or the cure?. Emerg Nurse. 2012, 19: 20-25. quiz 27
    • (2012) Emerg Nurse , vol.19 , pp. 20-25
    • Gardner, J.1
  • 2
    • 8344261590 scopus 로고    scopus 로고
    • Infection, fever, and exogenous and endogenous pyrogens: some concepts have changed
    • Dinarello CA: Infection, fever, and exogenous and endogenous pyrogens: some concepts have changed. J Endotoxin Res. 2004, 10: 201-222.
    • (2004) J Endotoxin Res , vol.10 , pp. 201-222
    • Dinarello, C.A.1
  • 3
    • 84949766949 scopus 로고    scopus 로고
    • Kyoto encyclopedia of Genes and Genomes (KEGG), Arachidonic acid metabolic pathway. http://www.genome.jp/dbget-bin/show_pathway?hsa00590
    • Arachidonic acid metabolic pathway.
  • 4
    • 80155201442 scopus 로고    scopus 로고
    • Central circuitries for body temperature regulation and fever
    • Nakamura K: Central circuitries for body temperature regulation and fever. Am J Physiol Regul Integr Comp Physiol. 2011, 301: R1207-R1228. 10.1152/ajpregu.00109.2011.
    • (2011) Am J Physiol Regul Integr Comp Physiol , vol.301 , pp. R1207-R1228
    • Nakamura, K.1
  • 6
    • 0037955831 scopus 로고    scopus 로고
    • Anti-cytokine therapeutics and infections
    • Dinarello CA: Anti-cytokine therapeutics and infections. Vaccine. 2003, 21 (Suppl 2): S24-S34.
    • (2003) Vaccine , vol.21 , pp. S24-S34
    • Dinarello, C.A.1
  • 8
    • 0026013460 scopus 로고
    • The beneficial effects of localized tumor necrosis factor production in BCG infection.
    • Kindler V, Sappino AP: The beneficial effects of localized tumor necrosis factor production in BCG infection. Behring Inst Mitt. 1991, 120-124.
    • (1991) Behring Inst Mitt. , pp. 120-124
    • Kindler, V.1    Sappino, A.P.2
  • 9
    • 77954549111 scopus 로고    scopus 로고
    • Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks
    • Ozgur A, Xiang Z, Radev DR, He Y: Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks. J Biomed Biotechnol. 2010, 2010: 426479-
    • (2010) J Biomed Biotechnol , vol.2010 , pp. 426479
    • Ozgur, A.1    Xiang, Z.2    Radev, D.R.3    He, Y.4
  • 10
    • 80052033833 scopus 로고    scopus 로고
    • Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network
    • Hur J, Xiang Z, Feldman EL, He Y: Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network. BMC Immunol. 2011, 12: 49-10.1186/1471-2172-12-49.
    • (2011) BMC Immunol , vol.12 , pp. 49
    • Hur, J.1    Xiang, Z.2    Feldman, E.L.3    He, Y.4
  • 11
    • 80052697346 scopus 로고    scopus 로고
    • Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology
    • Ozgur A, Xiang Z, Radev DR, He Y: Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology. J Biomed Semant. 2011, 2 (Suppl 2): S8-10.1186/2041-1480-2-S2-S8.
    • (2011) J Biomed Semant , vol.2 , pp. S8
    • Ozgur, A.1    Xiang, Z.2    Radev, D.R.3    He, Y.4
  • 13
    • 84949829608 scopus 로고    scopus 로고
    • Intelligent systems for molecular biology, Bio-ontologies SIG.
    • Toronto, Canada: Nature Precedings
    • Arp R, Smith B: Intelligent systems for molecular biology, Bio-ontologies SIG. Function, role, and disposition in basic formal ontology. 2008, Toronto, Canada: , Available from Nature Precedings (http://hdl.handle.net/10101/npre.2008.1941.1 )
    • (2008) Function, role, and disposition in basic formal ontology.
    • Arp, R.1    Smith, B.2
  • 16
    • 62549104880 scopus 로고    scopus 로고
    • SciMiner: web-based literature mining tool for target identification and functional enrichment analysis
    • Hur J, Schuyler AD, States DJ, Feldman EL: SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. Bioinformatics. 2009, 25: 838-840. 10.1093/bioinformatics/btp049.
    • (2009) Bioinformatics , vol.25 , pp. 838-840
    • Hur, J.1    Schuyler, A.D.2    States, D.J.3    Feldman, E.L.4
  • 23
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang DW, Sherman BT, Lempicki RA: Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37: 1-13. 10.1093/nar/gkn923.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009, 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 25
    • 79951812426 scopus 로고    scopus 로고
    • Indoleamine 2,3-dioxygenase is increased in hemodialysis patients and affects immune response to hepatitis B vaccination
    • Eleftheriadis T, Liakopoulos V, Antoniadi G, Stefanidis I, Galaktidou G: Indoleamine 2,3-dioxygenase is increased in hemodialysis patients and affects immune response to hepatitis B vaccination. Vaccine. 2011, 29: 2242-2247. 10.1016/j.vaccine.2011.01.051.
    • (2011) Vaccine , vol.29 , pp. 2242-2247
    • Eleftheriadis, T.1    Liakopoulos, V.2    Antoniadi, G.3    Stefanidis, I.4    Galaktidou, G.5
  • 26
    • 33745057423 scopus 로고    scopus 로고
    • Making sense of inflammation, epigenetics, and memory CD8+ T-cell differentiation in the context of infection
    • Pearce EL, Shen H: Making sense of inflammation, epigenetics, and memory CD8+ T-cell differentiation in the context of infection. Immunol Rev. 2006, 211: 197-202. 10.1111/j.0105-2896.2006.00399.x.
    • (2006) Immunol Rev , vol.211 , pp. 197-202
    • Pearce, E.L.1    Shen, H.2
  • 27
    • 0035925623 scopus 로고    scopus 로고
    • Programmed inflammatory processes induced by mucosal immunisation
    • Foxwell AR, Kyd JM, Cripps AW: Programmed inflammatory processes induced by mucosal immunisation. Vaccine. 2001, 19: 2522-2526. 10.1016/S0264-410X(00)00483-7.
    • (2001) Vaccine , vol.19 , pp. 2522-2526
    • Foxwell, A.R.1    Kyd, J.M.2    Cripps, A.W.3
  • 28
    • 0034473088 scopus 로고    scopus 로고
    • Cells and cytokines in inflammatory secretions of bovine mammary gland
    • Riollet C, Rainard P, Poutrel B: Cells and cytokines in inflammatory secretions of bovine mammary gland. Adv Exp Med Biol. 2000, 480: 247-258.
    • (2000) Adv Exp Med Biol , vol.480 , pp. 247-258
    • Riollet, C.1    Rainard, P.2    Poutrel, B.3
  • 29
    • 0029068410 scopus 로고
    • Pro-inflammatory cytokines in a ruminant model: pathophysiological, pharmacological, and therapeutic aspects
    • van Miert AS: Pro-inflammatory cytokines in a ruminant model: pathophysiological, pharmacological, and therapeutic aspects. Vet Q. 1995, 17: 41-50. 10.1080/01652176.1995.9694530.
    • (1995) Vet Q , vol.17 , pp. 41-50
    • van Miert, A.S.1
  • 31
    • 80053619973 scopus 로고    scopus 로고
    • Fever-like temperature modification differentially affects in vitro signaling of bradykinin B(1) and B(2) receptors
    • Leschner J, Ring L, Feierler J, Dinkel K, Jochum M, Faussner A: Fever-like temperature modification differentially affects in vitro signaling of bradykinin B(1) and B(2) receptors. Biol Chem. 2011, 392: 1021-1029.
    • (2011) Biol Chem , vol.392 , pp. 1021-1029
    • Leschner, J.1    Ring, L.2    Feierler, J.3    Dinkel, K.4    Jochum, M.5    Faussner, A.6
  • 34
    • 32944455665 scopus 로고    scopus 로고
    • Yellow fever vaccine YF-17D activates multiple dendritic cell subsets via TLR2, 7, 8, and 9 to stimulate polyvalent immunity
    • Querec T, Bennouna S, Alkan S, Laouar Y, Gorden K, Flavell R, Akira S, Ahmed R, Pulendran B: Yellow fever vaccine YF-17D activates multiple dendritic cell subsets via TLR2, 7, 8, and 9 to stimulate polyvalent immunity. J Exp Med. 2006, 203: 413-424. 10.1084/jem.20051720.
    • (2006) J Exp Med , vol.203 , pp. 413-424
    • Querec, T.1    Bennouna, S.2    Alkan, S.3    Laouar, Y.4    Gorden, K.5    Flavell, R.6    Akira, S.7    Ahmed, R.8    Pulendran, B.9
  • 35
    • 84869504451 scopus 로고    scopus 로고
    • Inflammasomes and their roles in health and disease
    • Lamkanfi M, Dixit VM: Inflammasomes and their roles in health and disease. Annu Rev Cell Dev Biol. 2012, 28: 137-161. 10.1146/annurev-cellbio-101011-155745.
    • (2012) Annu Rev Cell Dev Biol , vol.28 , pp. 137-161
    • Lamkanfi, M.1    Dixit, V.M.2
  • 37
    • 0036892403 scopus 로고    scopus 로고
    • Genetic clues to understanding periodic fevers, and possible therapies
    • McDermott MF: Genetic clues to understanding periodic fevers, and possible therapies. Trends Mol Med. 2002, 8: 550-554. 10.1016/S1471-4914(02)02425-5.
    • (2002) Trends Mol Med , vol.8 , pp. 550-554
    • McDermott, M.F.1
  • 39
    • 0034995205 scopus 로고    scopus 로고
    • Mutations in apoptosis genes: a pathogenetic factor for human disease
    • Mullauer L, Gruber P, Sebinger D, Buch J, Wohlfart S, Chott A: Mutations in apoptosis genes: a pathogenetic factor for human disease. Mutat Res. 2001, 488: 211-231. 10.1016/S1383-5742(01)00057-6.
    • (2001) Mutat Res , vol.488 , pp. 211-231
    • Mullauer, L.1    Gruber, P.2    Sebinger, D.3    Buch, J.4    Wohlfart, S.5    Chott, A.6
  • 40
    • 0032406457 scopus 로고    scopus 로고
    • Apoptosis, the heat shock response, hyperthermia, birth defects, disease and cancer. Where are the common links?
    • Edwards MJ: Apoptosis, the heat shock response, hyperthermia, birth defects, disease and cancer. Where are the common links?. Cell Stress Chaperones. 1998, 3: 213-220. 10.1379/1466-1268(1998)003<0213:ATHSRH>2.3.CO;2.
    • (1998) Cell Stress Chaperones , vol.3 , pp. 213-220
    • Edwards, M.J.1
  • 41
    • 0028568612 scopus 로고
    • Cytokines as mediators in the central nervous system
    • Pousset F: Cytokines as mediators in the central nervous system. Biomed Pharmacother. 1994, 48: 425-431. 10.1016/0753-3322(94)90003-5.
    • (1994) Biomed Pharmacother , vol.48 , pp. 425-431
    • Pousset, F.1
  • 42
    • 0034868617 scopus 로고    scopus 로고
    • Induction of specific cytotoxic lymphocytes in mice vaccinated with Brucella abortus RB51
    • He Y, Vemulapalli R, Zeytun A, Schurig GG: Induction of specific cytotoxic lymphocytes in mice vaccinated with Brucella abortus RB51. Infect Immun. 2001, 69: 5502-5508. 10.1128/IAI.69.9.5502-5508.2001.
    • (2001) Infect Immun , vol.69 , pp. 5502-5508
    • He, Y.1    Vemulapalli, R.2    Zeytun, A.3    Schurig, G.G.4
  • 43
    • 84867670536 scopus 로고    scopus 로고
    • Vaccine adverse event text mining system for extracting features from vaccine safety reports
    • Botsis T, Buttolph T, Nguyen MD, Winiecki S, Woo EJ, Ball R: Vaccine adverse event text mining system for extracting features from vaccine safety reports. J Am Med Inform Assoc. 2012, 19: 1011-1018. 10.1136/amiajnl-2012-000881.
    • (2012) J Am Med Inform Assoc , vol.19 , pp. 1011-1018
    • Botsis, T.1    Buttolph, T.2    Nguyen, M.D.3    Winiecki, S.4    Woo, E.J.5    Ball, R.6
  • 45
    • 84870367610 scopus 로고    scopus 로고
    • Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines
    • Sarntivijai S, Xiang Z, Shedden KA, Markel H, Omenn GS, Athey BD, He Y: Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines. PLoS ONE. 2012, 7 (11): e49941-10.1371/journal.pone.0049941.
    • (2012) PLoS ONE , vol.7 , Issue.11 , pp. e49941
    • Sarntivijai, S.1    Xiang, Z.2    Shedden, K.A.3    Markel, H.4    Omenn, G.S.5    Athey, B.D.6    He, Y.7
  • 46
    • 84872528219 scopus 로고    scopus 로고
    • Automatic Generation of MedDRA terms Groupings using an Ontology
    • Declerck G, Bousquet C, Jaulent MC: Automatic Generation of MedDRA terms Groupings using an Ontology. Stud Health Technol Inform. 2012, 180: 73-77.
    • (2012) Stud Health Technol Inform , vol.180 , pp. 73-77
    • Declerck, G.1    Bousquet, C.2    Jaulent, M.C.3
  • 47
    • 54949149564 scopus 로고    scopus 로고
    • A case report: using SNOMED CT for grouping Adverse Drug Reactions Terms
    • Alecu I, Bousquet C, Jaulent MC: A case report: using SNOMED CT for grouping Adverse Drug Reactions Terms. BMC Med Inform Decis Mak. 2008, 8 (Suppl 1): S4-10.1186/1472-6947-8-S1-S4.
    • (2008) BMC Med Inform Decis Mak , vol.8 , pp. S4
    • Alecu, I.1    Bousquet, C.2    Jaulent, M.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.