A viral histone H4 joins to eukaryotic nucleosomes and alters host gene expression

Journal of Virology

Volumn 87, Issue 20, 2013, Pages 11223-11230

  Hepat, Rahul ^a   Song, Ji Joon ^b   Lee, Daeweon ^c   Kim, Yonggyun ^a  

^a Andong National University   (South Korea)

^b Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^c Kyungsung University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H2A; HISTONE H2B; HISTONE H3; HISTONE H4;

ARTICLE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; COTESIA PLUTELLAE BRACOVIRUS; DNA VIRUS; EXPRESSION VECTOR; GENE EXPRESSION REGULATION; IMMUNOBLOTTING; INSECT CHROMOSOME; MOLECULAR INTERACTION; NONHUMAN; NUCLEOSOME; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; SEQUENCE ANALYSIS; TRANSCRIPTOMICS; TRANSIENT EXPRESSION; TRIBOLIUM CASTANEUM;

ANIMALS; CHROMATIN IMMUNOPRECIPITATION; EPIGENESIS, GENETIC; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HISTONES; HOST-PATHOGEN INTERACTIONS; NUCLEOSOMES; POLYDNAVIRIDAE; PROTEIN BINDING; TRIBOLIUM; VIRAL PROTEINS;

EID: 84886873485     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01759-13     Document Type: Article

References (37)

1. Wolffe AP. 1992. Chromatin: structure and function. Academic Press, San Diego, CA.
2. Turner BM. 1993. Decoding the nucleosome. Cell 759:5-8.
3. Grunstein M. 1997. Histone acetylation in chromatin structure and transcription. Nature 389:349-352.
4. Espagne E, Dupuy C, Huguet E, Cattolico L, Provost B, Martins N, Poirié M, Periquet G, Drezen JM. 2004. Genome sequence of a polydnavirus: insights into symbiotic virus evolution. Science 306:286-289.
5. Ibrahim AMA, Choi JY, Je YH, Kim Y. 2005. Structure and expression profile of two putative Cotesia plutellae bracovirus genes (CpBV-H4 and CpBV-E94α) in parasitized Plutella xylostella. J. Asia Pac. Entomol. 8:359-366.
6. Kim Y, Choi JY, Je YH. 2007. Cotesia plutellae bracovirus genome and its function in altering insect physiology. J. Asia Pac. Entomol. 10:181-191.
7. Webb BA, Beckage NE, Hayakawa Y, Krell PJ, Lanzrein B, Stoltz DB, Strand MR, Summers MD. 2000. Polydnaviridae, p 253-260. In van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, ManiloffJ, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (ed), Virus taxonomy: seventh report of the International Committee on the Taxonomy of Viruses. Academic Press, San Diego, CA.
8. Krell PJ, Summers MD, Vinson SB. 1982. Virus with a multipartite superhelical DNA genome from the ichneumonid parasitoid Campoletis sonorensis. J. Virol. 43:859-870.
9. Stoltz DB. 1990. Evidence for chromosomal transmission of polydnavirus DNA. J. Gen. Virol. 71:1051-1056.
10. Whitfield JB. 2000. Phylogeny of microgastroid braconid wasps, and what it tells us about polydnavirus evolution, p 97-105. In Austin AD, Dowton M(ed), The Hymenoptera: evolution, biodiversity and biological control. CSIRO, Melbourne, Australia.
11. Belle E, Beckage NE, Rousselet J, Poirié M, Lemeunier F, Drezen JM. 2002. Visualization of polydnavirus sequences in a parasitoid wasp chromosome. J. Virol. 76:5793-5796.
12. Wyder S, Tschannen A, Hochuli A, Gruber A, Saladin V, Zumbach S, Lanzrein B. 2002. Characterization of Chelonus inanitus polydnavirus segments: sequences and analysis, excision site and demonstration of clustering. J. Gen. Virol. 83:247-256.
13. Theilmann DA, Summers MD. 1986. Molecular analysis of Campoletis sonorensis virus DNA in the lepidopteran host Heliothis virescens. J. Gen. Virol. 67:1961-1969.
14. Theilmann DA, Summers MD. 1988. Identification and comparison of Campoletis sonorensis virus transcripts expressed from four genomic segments in the insect hosts Campoletis sonorensis and Heliothis virescens. Virology 167:329-341.
15. VolkoffAN, Jouan V, Urbach S, Samain S, Bergoin M, Wincker P, Demettre E, Cousserans F, Provost B, Coulibaly F, Legeai F, Beliveau C, Cusson M, Gyapay G, Drezen JM. 2010. Analysis of virion structural components reveals vestiges of the ancestral ichnovirus genome. PLoS Pathog. 6:e1000923.
16. Webb B, Strand MR. 2005. The biology and genomics of polydnaviruses, p 323-360. In Gilbert L, Iatrou K, Gill SS (ed), Comprehensive molecular insect science, vol 6. Elsevier, Amsterdam, Netherlands.
17. Chen YF, Gao F, Ye XQ, Wei SJ, Shi M, Zheng HJ, Chen X. 2011. Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome. Virology 414:42-50.
18. Gad W, Kim Y. 2008. A viral histone H4 encoded by Cotesia plutellae bracovirus inhibits hemocyte-spreading behaviour of the diamondback moth, Plutellae xylostella. J. Gen. Virol. 89:931-938.
19. Gad W, Kim Y. 2009. N-terminal tail of a viral histone H4 encoded in Cotesia plutellae bracovirus is essential to suppress gene expression of host histone H4. Insect Mol. Biol. 18:111-118.
20. Kim J, Kim Y. 2010. Transient expression of a viral histone H4, CpBV-H4 suppresses immune-associated genes of Plutella xylostella and Spodoptera exigua. J. Asia Pac. Entomol. 13:313-318.
21. Hepat R, Kim Y. 2011. Transient expression of a viral histone H4 inhibits expression of cellular and humoral immune-associated genes in Tribolium castaneum. Biochem. Biophys. Res. Commun. 415:279-283.
22. Zou Z, Evans JD, Lu Z, Zhao P, Williams M, Sumathipala N, Hetru C, Hultmark D, Jian HN. 2007. Comparative genomic analysis of the Tribolium immune system. Genome Biol. 8:R177. doi:10.1186/gb-2007-8-8-r177.
23. Dyer PN, Edayathumangalam RS, White CL, Bao Y, Chakravarthy S, Muthurajan UM, Luger K. 2004. Reconstitution of nucleosome core particles from recombinant histones and DNA. Methods Enzymol. 375: 23-44.
24. Towbin H, Staehelin T, Gordon J. 1979. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. U. S. A. 76:4350-4354.
25. Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25. doi:10.1186/gb-2009-10-3-r25.
26. Robinson MD, Oshlack A. 2010. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11:R25. doi:10.1186/gb-2010-11-3-r25.
27. -ΔΔCT method. Methods 25: 402-408.
28. Hepat R, Kim Y. 2012. In vivo transient expression for the functional analysis of polydnaviral genes. J. Invertebr. Pathol. 111:152-159.
29. Arents G, Burlingame RW, Wang BC, Love WE, Moudrianakis EN. 1991. The nucleosomal core histone octamer at 3.1 Å resolution: a tripartite protein assembly and a left-handed superhelix. Proc. Natl. Acad. Sci. U.S.A. 88:10148-10152.
30. Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ. 1997. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389:251-260.
31. Wu RS, Panusz HT, Hatcj CL, Bonner WM. 1986. Histones and their modifications. CRC Crit. Rev. Biochem. 20:201-263.
32. Kuo MH, Allis CD. 1998. Roles of histone acetyltransferases and deacetylases in gene regulation. Bioessays 20:615-626.
33. Shogren-Knaak M, Ishii H, Sun JM, Pazin MJ, Davie JR, Peterson CL. 2006. Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 311:844-847.
34. Pazin M, Kadonaga J. 1997. What's up and down with histone deacetylation and transcription? Cell 89:325-328.
35. Turner BM. 1993. Decoding the nucleosome. Cell 75:5-8.
36. Kwon B, Kim Y. 2008. Transient expression of an EP1-like gene encoded in Cotesia plutellae bracovirus suppresses the hemocyte population in the diamondback moth, Plutella xylostella. Dev. Comp. Immunol. 32:932-942.
37. Kim J, Kim Y. 2010. A viral histone H4 suppresses expression of a transferrin that plays a role in the immune response of the diamondback moth, Plutella xylostella. Insect Mol. Biol. 19:567-574.