Levels and distribution patterns of mitochondrial cox3 gene variation in brown seaweed, Sargassum polycystum C. Agardh (Fucales, Phaeophyceae) from Southeast Asia

Journal of Applied Phycology

Volumn 26, Issue 2, 2014, Pages 1301-1308

  Kantachumpoo, Attachai ^a   Uwai, Shinya ^b   Noiraksar, Thidarat ^c   Komatsu, Teruhisa ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NIIGATA UNIVERSITY   (Japan)

^c BURAPHA UNIVERSITY   (Thailand)

Author keywords

cox3; Mitochondrial DNA; Phylogeography; Sargassum polycystum; Southeast Asia; Sundaland

Indexed keywords

EID: 84886736501     PISSN: 09218971     EISSN: 15735176     Source Type: Journal    
DOI: 10.1007/s10811-013-0175-4     Document Type: Article

References (56)

1. Agardh CA (1824) Systema algarum xxxvііі. Berling, Lund, pp 312
2. Ahmady-Asbchin S, Tabaraki R, Jafari N, Allahverdi A, Azhdehakoshpour A (2013) Study of nickel and copper biosorption on brown algae Sargassum angustifolium: application of response surface methodology (RSM). Environ Technol. doi: 10.1080/09593330.2013.772643
3. Avise JC (2009) Phylogeography: retrospect and prospect. J Biogeogr 36:3–15
4. Bae DY, Ang PO, Boo SM (2013) Mitochondrial cox3 and trnW-I sequence diversity of Sargassum muticum. Aquat Bot 104:220–223
5. Bird MI, Taylor D, Hunt C (2005) Palaeoenvironments of insular Southeast Asia during the Last Glacial Period: a savanna corridor in Sundaland? Q Sci Rev J 24:2228–2242
6. Boo SM, Lee KM, Cho GY, Nelson W (2011) Colpomenia claytonii sp. nov. (Scytosiphonaceae, Phaeophyceae) based on morphology and mitochondrial cox3 sequences. Bot Mar 54:159–167
7. Cheang CC, Chu KU, Ang PO Jr (2008) Morphological and genetic variation in the populations of Sargassum hemiphyllum (Phaeophyceae) in the Northwestern Pacific. J Phycol 44:855–865
8. Cheang CC, Chu KH, Fujita D, Yoshida G, Hiraoka M, Critchley A, Choi HG, Duan D, Serisawa Y, Ang PO Jr (2010a) Low genetic variability of Sargassum muticum (Phaeophyceae) revealed by a global analysis of native and introduced populations. J Phycol 46:1063–1074
9. Cheang CC, Chu KH, Ang PO Jr (2010b) Phylogeography of the marine macroalga Sargassum hemiphyllum (Phaeophyceae, Heterokontophyta) in northwestern Pacific. J Mol Ecol 19:2933–2948
10. Chiang YM, Yoshida T, Ajisaka T, Trono Jr G, Tseng CK, Baoren L (1992) Distribution and variation in Sargassm polycystum C.A. Agadh (Fucales. Phaeophyta). In: Abbott IA (ed) Taxonomy of Economic seaweeds with reference to some Pacific and Western Atlantic species Volume III. California Sea Grant College, pp 35–42
11. Cho SM, Lee SM, Ko YD, Mattio L, Boo SM (2012) Molecular systematic reassessment of Sargassum (Fucales, Phaeophyceae) in Korea using four gene regions. Bot Mar 55:473–484
12. Drummond AJ, Suchard MA, Xie D, Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29:1969–1973
13. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform 1:47–50
14. Filippi B, Komatsu T, Tanaka K (2010) Simulation of drifting seaweeds in East China Sea. Ecol Info 5:67–72
15. Fluxus-engineering (2008) Network 4.6.1.1 software. http://www.fluxus-engineering.com/sharenet.htm
16. Goro Y, Koji (2001) Growth and maturation of Sargassum horneri seedlings after long-term storage under a low temperature condition. Jpn J Phycol 49:177–184 (in Japanese with English summary)
17. Guiry MD, Guiry GM (2013) AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org; searched on 11 April 2013
18. Hall R (1998) The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. Backhuys, Leyden, pp 99–131
19. He L, Zhang A, Zhu C, Weese D, Qiao Z (2011) Phylogeography of the mud crab (Scylla serrata) in the Indo-West Pacific reappraised from mitochondrial molecular and oceanographic clues: transoceanic dispersal and coastal sequential colonization. J Mol Ecol 32:52–64
20. Hewitt GM (1996) Some genetic consequence of ice age, and their role in divergence and speciation. Biol J Linn Soc Lond 58:247–276
21. Hoarau G, Coyer JA, Veldsink JH, Stam WT, Olsen JL (2007) Glacial refugia and recolonization pathways in the brown seaweed Fucus serratus. Mol Ecol 16:3606–3616
22. Hu ZM, Uwai S, Yu SH, Komatsu T, Ajisaka T, Duan DL (2011) Phylogeographic heterogeneity of the brown macroalga Sargassum horneri (Fucaceae) in the northwestern Pacific in relation to late Pleistocene glaciation and tectonic configurations. J Mol Ecol 20:3894–3909
23. Hu ZM, Zhang J, Lopesz-Bautista J, Duan DL (2013) Asymmetric genetic exchange in the brown seaweed Sargassum fusiforme (Phaeophyceae) driven by oceanic currents. Mar Biol 160:1407–1414
24. Komatsu T, Ariyama H, Nakahara H, Sakamoto W (1982) Spatial and temporal distributions of water temperature in a Sargassum forest. J Oceanogr Soc Jpn 38:63–72
25. Komatsu T (1989) Day-night reversion in the horizontal distributions of dissolved oxygen content and pH in a Sargassum forest. J Oceanogr Soc Jpn 45:106–115
26. Komatsu T, Murakami SI, Kawai H (1996) Influence of a Sargassum forest on the spatial distribution of water flow. Fish Oceanogr 3:256–266
27. KomatsuT TK, Filippi JB, Sawgawa T, Matsunaga D, Mikami A, Ishida K, Ajisaka T, Tanaka K, Aoki M, Wang WD, Liu HF, Zhang SY, Zhou MD, Sugimoto T (2007) Distribution of drifting seaweeds in eastern East China Sea. J Mar Syst 67:245–252
28. Komatsu T, Matsunaga D, Mikami A, Sagawa T, Boisnier E, Tatsukawa K, Aoki M, Ajisak T, Uwai S, Tanaka K, Ishida K, Tanoe H, Sugimoto T (2008) Abundance of drifting seaweeds in eastern East China Sea. J Appl Phycol 20:801–809
29. Lee KM, Yang EC, Coyer JA, Zuccarello GC, Wang WL, Choi CG, Boo SM (2012) Phylogeography of the seaweed Ishige okamurae (Phaeophyceae) evidence for glacial refugia in the northwest Pacific region. Mar Biol 159:1021–1028
30. Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452
31. Mattio L, Payri CE, Verlaque M (2009) Taxonomic revision and geographic distribution of the subgenus Sargassum (Fucales, Phaeophyceae) in the western and central Pacific Islands based on morphological and molecular analyses. J Phycol 45:1213–1227
32. Mattio L, Payri CE, Verlaque M, Reviers BD (2010) Taxonomic revision of Sargassum sect. Acanthocarpicae (Fucales, Phaeophyceae). Taxon 59:896–904
33. May-Lin BY, Ching-Lee W (2013) Seasonal growth rate of Sargassum species at Teluk Kemang, Port Dickson, Malaysia. J Appl Phycol 25:805–814
34. Minegishi Y, Gagnaire PA, Aoyama J, Bosc P, Feunteun E, Tsukamoto K, Berrebi P (2012) Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor. J Biogeogr 39:408–420
35. Noiraksar T, Ajisaka T (2008) Taxonomy and distribution of Sargassum (Phaeophyceae) in the Gulf of Thailand. J Appl Phycol 20:963–977
36. Norton TA (1992) Dispersal by macroalgae. Br Phycol J 27:293–301
37. Oak JH, Suh Y, Lee IK (2002) Phylogeonetic relationships of Sargassum subgenus Bactrophycus (Sargassaceae, Phaeophyceae) inferred from rDNA ITS Sequences. Algae 17:235–247
38. Oliver ECJ (2012) Intraseasonal variability of sea level and circulation in the Gulf of Thailand: the role of the Madden–Julian Oscillation. Clim Dyn. doi: 10.1007/s00382-012-1595-6
39. Pelejero C, Kienast M, Wang L, Grimalt JO (1999) The flooding of Sundaland during the last deglaciation: imprints in hemipelagic sediments from the southern South China Sea. Earth Planet Sci Lett 171:661–671
40. Peilou EC (1991) After the Ice Age: The return of Life to Glaciated North America. University of Chicago Press, Chicago
41. Phang SM, Wong CL, Ng WS, Sim MC (2008) Checklist of Malaysian Sargassum species. In: Phang SM, Lewmanomont K, Lim PE (eds) Taxomomy of Southeast Asian Seaweeds, vol 2, Institute of Ocean and Earth Science (IOES). University of Malaya, Kuala Lumpur, pp 83–103
42. Phillips N, Fredericq S (2000) Biogeographic and phylogenetic investigations of the pantropical genus Sargassum (Fucales, Phaeophyceae) with respect to Gulf of Mexico Species. Gulf Mex Sci 18:77–87
43. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818
44. Ronquist F, Huelsenbeck JP (2003) MRBAYES: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574
45. Rueness J (1989) Sargassum muticum and other introduced Japanese macroalgae: biological pollution of European coasts. Mar Poll Bull 20:173–176
46. Stamatakis A (2006) RAxML-VI-HPCP Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690
47. Steen H (2003) Intraspecific competition in Sargassum muticmu (Phaeophyceae) germlings under various density, nutrient and temperature regimes. Bot Mar 46:36–43
48. Stiger V, Horiguchi T, Yoshida T, Coleman AW, Masuda M (2000) Phylogenetic relationships of Sargassum (Sargassaceae, Phaeophyceae) with reference to a taxonomic revision of the section Phyllocystae base on ITS-2 nrDNA sequences. Phycol Res 48:251–260
49. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
50. Trono GC Jr (1992) Preliminary report on the site evaluation/ assessment and collection trip for seaweed farming at Sorsogon, the project area. Seaweed Production Development Project. PHI/89/004 BFAR/UNDP/FAO Philippines. Field Document 06
51. Uwai S, Arai S, Morita T, Kawai H (2007) Genetic distinctness and phylogenetic relationships among Undaria species (Laminariales, Phaeophyceae) base on mitochondrial cox3 gene sequences. Phycol Res 55:263–271
52. Uwai S, Kogame K, Yoshida G, Kawai H, Ajisaka T (2009) Geographical genetic structure and phylogeography of the Sargassum horneri/filicinum complex in Japan, based on the mitochondrial cox3 haplotype. Mar Biol 156:901–911
53. Van den Hoek C (1987) The possible significance of long-range dispersal for the biogeography of seaweeds. Helgol Meeresunters 41:261–272
54. Voris HK (2000) Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. J Biogeogr 27:1153–1167
55. Wong CL, Ng WS, Phang SM (2008) Taxonomic notes on Sargassum species (Sargassaceae, Phaeophyta) from Malaysia. In: Phang SM, Lewmanomont K, Lim PE (eds) Taxonomy of Southeast Asian Seaweeds, vol 2, Institute of Ocean and Earth Science (IOES). University of Malaya, Kuala Lumpur, pp 105–131
56. Woodruff DS (2010) Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today’s patterns and the future of the remaining refugial-phase biodiversity. Biodivers Conserv 19:919–941