-
1
-
-
0026320866
-
The Energy Landscapes and Motions of Proteins
-
Frauenfelder, H.; Sligar, S. G.; Wolynes, P. G. The Energy Landscapes and Motions of Proteins Science 1991, 254, 1598-1603
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
3
-
-
0028924552
-
Navigating the Folding Routes
-
Wolynes, P. G.; Onuchic, J. N.; Thirumalai, D. Navigating the Folding Routes Science 1995, 267, 1619-1620
-
(1995)
Science
, vol.267
, pp. 1619-1620
-
-
Wolynes, P.G.1
Onuchic, J.N.2
Thirumalai, D.3
-
4
-
-
0345743709
-
Protein Topology Determines Binding Mechanism
-
Levy, Y.; Wolynes, P. G.; Onuchic, J. N. Protein Topology Determines Binding Mechanism Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 511-516
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 511-516
-
-
Levy, Y.1
Wolynes, P.G.2
Onuchic, J.N.3
-
5
-
-
34250356055
-
Optimal Specificity and Function for Flexible Biomolecular Recognition
-
Wang, J.; Xu, L.; Wang, E. K. Optimal Specificity and Function for Flexible Biomolecular Recognition Biophys. J. 2007, 92, L109-L101
-
(2007)
Biophys. J.
, vol.92
-
-
Wang, J.1
Xu, L.2
Wang, E.K.3
-
7
-
-
0001660191
-
Optical Modification of a Single Impurity Molecule in a Solid
-
Basche, T.; Moerner, W. E. Optical Modification of a Single Impurity Molecule in a Solid Nature 1992, 355, 335-337
-
(1992)
Nature
, vol.355
, pp. 335-337
-
-
Basche, T.1
Moerner, W.E.2
-
8
-
-
9644263074
-
Intermittency of Single Molecule Reaction Dynamics in Fluctuating Environments
-
Wang, J.; Wolynes, P. G. Intermittency of Single Molecule Reaction Dynamics in Fluctuating Environments Phys. Rev. Lett. 1995, 74, 4317-4320
-
(1995)
Phys. Rev. Lett.
, vol.74
, pp. 4317-4320
-
-
Wang, J.1
Wolynes, P.G.2
-
9
-
-
0032484096
-
Single-Molecule Enzymatic Dynamics
-
Lu, H. P.; Xun, L.; Xie, X. S. Single-Molecule Enzymatic Dynamics Science 1998, 282, 1877-1882
-
(1998)
Science
, vol.282
, pp. 1877-1882
-
-
Lu, H.P.1
Xun, L.2
Xie, X.S.3
-
11
-
-
0031879114
-
Stochastic Kinetic Analysis of Developmental Pathway Bifurcation in Phage Lambda-infected Escherichia Coli Cells
-
Arkin, A.; Ross, J.; McAdams, H. H. Stochastic Kinetic Analysis of Developmental Pathway Bifurcation in Phage Lambda-infected Escherichia Coli Cells Genetics 1998, 149, 1633-1648
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
12
-
-
77952914558
-
The Potential Landscape of Genetic Circuits Imposes the Arrow of Time in Stem Cell Differentiation
-
Wang, J.; Xu, L.; Wang, E. K.; Huang, S. The Potential Landscape of Genetic Circuits Imposes the Arrow of Time in Stem Cell Differentiation Biophys. J. 2010, 99, 29-39
-
(2010)
Biophys. J.
, vol.99
, pp. 29-39
-
-
Wang, J.1
Xu, L.2
Wang, E.K.3
Huang, S.4
-
13
-
-
79957710315
-
Quantifying the Waddington Landscape and Biological Paths for Development and Differentiation
-
Wang, J.; Zhang, K.; Xu, L.; Wang, E. K. Quantifying the Waddington Landscape and Biological Paths for Development and Differentiation Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 8257-8262
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 8257-8262
-
-
Wang, J.1
Zhang, K.2
Xu, L.3
Wang, E.K.4
-
14
-
-
84863643126
-
Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling two Coupled Cellular Rhythms
-
Gerard, C.; Goldbeter, A. Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling two Coupled Cellular Rhythms PLoS Comput. Biol. 2012, 8, e1002516
-
(2012)
PLoS Comput. Biol.
, vol.8
, pp. 1002516
-
-
Gerard, C.1
Goldbeter, A.2
-
15
-
-
3142734333
-
Dynamic Control of Positional Information in the Early Drosophila Embryo
-
Jaeger, J.; Surkova, S.; Blagov, M.; Janssens, H.; Kosman, D.; Kozlov, K. N.; Manu Myasnikova, E.; Vanario-Alonso, C. E.; Samsonova, M.; Sharp, D. H.; Reinitz, J. Dynamic Control of Positional Information in the Early Drosophila Embryo Nature 2004, 430, 368-371
-
(2004)
Nature
, vol.430
, pp. 368-371
-
-
Jaeger, J.1
Surkova, S.2
Blagov, M.3
Janssens, H.4
Kosman, D.5
Kozlov, K.N.6
Manu Myasnikova, E.7
Vanario-Alonso, C.E.8
Samsonova, M.9
Sharp, D.H.10
Reinitz, J.11
-
16
-
-
29444460232
-
Diffusion and Scaling during Early Embryonic Pattern Formation
-
Gregor, T.; Bialek, W.; de Ruyter van Steveninck, R. R.; Tank, D. W.; Wieschaus, E. F. Diffusion and Scaling During Early Embryonic Pattern Formation Proc. Natl. Acad. Sci. 2005, 102, 18403-18407
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 18403-18407
-
-
Gregor, T.1
Bialek, W.2
De Ruyter Van Steveninck, R.R.3
Tank, D.W.4
Wieschaus, E.F.5
-
17
-
-
43149090775
-
Intrinsic Noise, Dissipation Cost, and Robustness of Cellular Networks: The Underlying Energy Landscape of MAPK Signal Transduction
-
Lapidus, S.; Han, B.; Wang, J. Intrinsic Noise, Dissipation Cost, and Robustness of Cellular Networks: the Underlying Energy Landscape of MAPK Signal Transduction Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 6039-6044
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 6039-6044
-
-
Lapidus, S.1
Han, B.2
Wang, J.3
-
18
-
-
0037418265
-
Stochastic Gene Expression as a Many-body Problem
-
Sasai, M.; Wolynes, P. G. Stochastic Gene Expression as a Many-body Problem Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 2374-2379
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 2374-2379
-
-
Sasai, M.1
Wolynes, P.G.2
-
19
-
-
34250320968
-
Quantifying Robustness and Dissipation Cost of Yeast Cell Cycle Network: The Funneled Energy Landscape Perspectives
-
Han, B.; Wang, J. Quantifying Robustness and Dissipation Cost of Yeast Cell Cycle Network: The Funneled Energy Landscape Perspectives Biophys. J. 2007, 92, 3755-3763
-
(2007)
Biophys. J.
, vol.92
, pp. 3755-3763
-
-
Han, B.1
Wang, J.2
-
20
-
-
79951788338
-
Adiabatic and Non-Adiabatic Non-equilibrium Stochastic Dynamics of Single Regulating Genes
-
Feng, H. D.; Han, B.; Wang, J. Adiabatic and Non-Adiabatic Non-equilibrium Stochastic Dynamics of Single Regulating Genes J. Phys. Chem. B 2011, 115, 1254-1261
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 1254-1261
-
-
Feng, H.D.1
Han, B.2
Wang, J.3
-
21
-
-
0034225547
-
The Chemical Langevin Equation
-
Gillespie, D. T. The Chemical Langevin Equation J. Chem. Phys. 2000, 113, 297-306
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 297-306
-
-
Gillespie, D.T.1
-
23
-
-
79952619659
-
Landscape and Flux Decomposition for Exploring Global Natures of Non-equilibrium Dynamical Systems under Intrinsic Statistical Fluctuations
-
Li, C. H.; Wang, E. K.; Wang, J. Landscape and Flux Decomposition for Exploring Global Natures of Non-equilibrium Dynamical Systems under Intrinsic Statistical Fluctuations Chem. Phys. Lett. 2011, 505, 75-80
-
(2011)
Chem. Phys. Lett.
, vol.505
, pp. 75-80
-
-
Li, C.H.1
Wang, E.K.2
Wang, J.3
-
24
-
-
71149087930
-
Spatially Distributed Cell Signalling
-
Kholodenko, B. N. Spatially Distributed Cell Signalling FEBS Lett. 2009, 583, 4006-4012
-
(2009)
FEBS Lett.
, vol.583
, pp. 4006-4012
-
-
Kholodenko, B.N.1
-
25
-
-
77951756329
-
Nonequilibrium Fluctuations in Metaphase Spindles: Polarized Light Microscopy, Image Registration, and Correlation Functions
-
Brugues, J.; Needleman, D. J. Nonequilibrium Fluctuations in Metaphase Spindles: Polarized Light Microscopy, Image Registration, and Correlation Functions Proc. SPIE 2010, 7618, 76180L-1
-
(2010)
Proc. SPIE
, vol.7618
-
-
Brugues, J.1
Needleman, D.J.2
-
26
-
-
0000846054
-
Microscopic Simulation of Chemical Instabilities
-
Baras, F.; Mansour, M. M. Microscopic Simulation of Chemical Instabilities Adv. Chem. Phys. 1997, 100, 393-475
-
(1997)
Adv. Chem. Phys.
, vol.100
, pp. 393-475
-
-
Baras, F.1
Mansour, M.M.2
-
27
-
-
29244454300
-
Green's-function Reaction Dynamics: A Particle-based Approach for Simulating Biochemical Networks in Time and Space
-
van Zon, J. S.; ten Wolde, P. R. Green's-function Reaction Dynamics: a Particle-based Approach for Simulating Biochemical Networks in Time and Space J. Chem. Phys. 2005, 123, 234910
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 234910
-
-
Van Zon, J.S.1
Ten Wolde, P.R.2
-
28
-
-
42549110153
-
Exact Probabilistic Solution of Spatial-dependent Stochastics and Associated Spatial Potential Landscape for the Bicoid Protein
-
Lepzelter, D.; Wang, J. Exact Probabilistic Solution of Spatial-dependent Stochastics and Associated Spatial Potential Landscape for the Bicoid Protein Phys. Rev. E. 2008, 77, 041917
-
(2008)
Phys. Rev. E.
, vol.77
, pp. 041917
-
-
Lepzelter, D.1
Wang, J.2
-
29
-
-
34247619844
-
Fundamental Limits to Position Determination by Concentration Gradients
-
Tostevin, F.; ten Wolde, P. R.; Howard, M. Fundamental Limits to Position Determination by Concentration Gradients PLoS Comput. Biol. 2007, 3, e78
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 78
-
-
Tostevin, F.1
Ten Wolde, P.R.2
Howard, M.3
-
30
-
-
79952325917
-
Approximating Intrinsic Noise in Continuous Multispecies Models
-
Scott, M.; Poulin, F. J.; Tang, H. Approximating Intrinsic Noise in Continuous Multispecies Models Proc. R. Soc. A 2011, 467, 718-737
-
(2011)
Proc. R. Soc. A
, vol.467
, pp. 718-737
-
-
Scott, M.1
Poulin, F.J.2
Tang, H.3
-
32
-
-
0001658007
-
-
Moss, F. McClintock, P. V. E. Cambridge University Press: New York
-
Graham, R. Noise in Nonlinear Dynamical Systems; Moss, F., McClintock, P. V. E., Eds.; Cambridge University Press: New York, 1989; Vol. 1; p 225.
-
(1989)
Noise in Nonlinear Dynamical Systems
, vol.1
, pp. 225
-
-
Graham, R.1
-
35
-
-
51349120674
-
Emerging of Stochastic Dynamical Equalities and Steady State Thermodynamics from Darwinian Dynamics
-
Ao, P. Emerging of Stochastic Dynamical Equalities and Steady State Thermodynamics from Darwinian Dynamics Commun. Theor. Phys. 2008, 49, 1073-1090
-
(2008)
Commun. Theor. Phys.
, vol.49
, pp. 1073-1090
-
-
Ao, P.1
-
36
-
-
50449104011
-
Potential Landscape and Flux Framework of Nonequilibrium Networks: Robustness, Dissipation and Coherence of Biochemical Oscillations
-
Wang, J.; Xu, L.; Wang, E. K. Potential Landscape and Flux Framework of Nonequilibrium Networks: Robustness, Dissipation and Coherence of Biochemical Oscillations Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 12271-12276
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 12271-12276
-
-
Wang, J.1
Xu, L.2
Wang, E.K.3
-
37
-
-
77957734642
-
Kinetic Paths, Time Scale, and Underlying Landscapes: A Path Integral Framework to Study Global Natures of Nonequilibrium Systems and Networks
-
Wang, J.; Zhang, K.; Wang, E. K. Kinetic Paths, Time Scale, and Underlying Landscapes: a Path Integral Framework to Study Global Natures of Nonequilibrium Systems and Networks J. Chem. Phys. 2010, 133, 125103
-
(2010)
J. Chem. Phys.
, vol.133
, pp. 125103
-
-
Wang, J.1
Zhang, K.2
Wang, E.K.3
-
38
-
-
71649100653
-
Entropy Demystified: The "thermo"-dynamics of Stochastically Fluctuating Systems
-
Qian, H. Entropy Demystified: The "thermo"-dynamics of Stochastically Fluctuating Systems Methods Enzymol. 2009, 467, 111-134
-
(2009)
Methods Enzymol.
, vol.467
, pp. 111-134
-
-
Qian, H.1
-
39
-
-
84865166048
-
The Potential and Flux Landscape Theory of Evolution
-
Zhang, F.; Xu, L.; Zhang, K.; Wang, E. K.; Wang, J. The Potential and Flux Landscape Theory of Evolution J. Chem. Phys. 2012, 137, 065102
-
(2012)
J. Chem. Phys.
, vol.137
, pp. 065102
-
-
Zhang, F.1
Xu, L.2
Zhang, K.3
Wang, E.K.4
Wang, J.5
-
40
-
-
33748404855
-
Lyapunov Function and Stationary Probability Distributions
-
Hu, G. Lyapunov Function and Stationary Probability Distributions Z. Phys. B 1986, 65, 103-106
-
(1986)
Z. Phys. B
, vol.65
, pp. 103-106
-
-
Hu, G.1
-
41
-
-
0003832636
-
-
Tirapegui, E. Villarroel, D. D. Reidel: Dordrecht, The Netherlands.
-
Graham, R. In Instabilities and Nonequilibrium Structures; Tirapegui, E., Villarroel, D., Eds.; D. Reidel: Dordrecht, The Netherlands, 1987.
-
(1987)
Instabilities and Nonequilibrium Structures
-
-
Graham, R.1
-
42
-
-
0000791022
-
Steady-State Ensemble for the Complex Ginzburg-Landau Equation with Weak Noise
-
Graham, R.; Tel, T. Steady-State Ensemble for the Complex Ginzburg-Landau Equation with Weak Noise Phys. Rev. A 1990, 42, 4661-4677
-
(1990)
Phys. Rev. A
, vol.42
, pp. 4661-4677
-
-
Graham, R.1
Tel, T.2
-
43
-
-
4244187218
-
Global Stability of Stationary Patterns in Bistable Reaction-Diffusion Systems
-
Izus, G.; Deza, R.; Ramirez, O.; Wio, H. S.; Zanette, D. H. Global Stability of Stationary Patterns in Bistable Reaction-Diffusion Systems Phys. Rev. E 1995, 52, 129-136
-
(1995)
Phys. Rev. e
, vol.52
, pp. 129-136
-
-
Izus, G.1
Deza, R.2
Ramirez, O.3
Wio, H.S.4
Zanette, D.H.5
-
44
-
-
34447503863
-
Aspects of Stochastic Resonance in Reaction-Diffusion Systems: The Nonequilibrium-Potential Approach
-
Wio, H. S.; Deza, R. R. Aspects of Stochastic Resonance in Reaction-Diffusion Systems: The Nonequilibrium-Potential Approach Eur. Phys. J. Special Topics 2007, 146, 111-126
-
(2007)
Eur. Phys. J. Special Topics
, vol.146
, pp. 111-126
-
-
Wio, H.S.1
Deza, R.R.2
-
45
-
-
34547275473
-
Brownian Motion in a Field of Force and the Diffusion Model of Chemical Reactions
-
Kramers, H. A. Brownian Motion in a Field of Force and the Diffusion Model of Chemical Reactions Physica 1940, 7, 284-304
-
(1940)
Physica
, vol.7
, pp. 284-304
-
-
Kramers, H.A.1
-
46
-
-
0000871759
-
Stochastic Processes and Statistical Physics
-
Moyal, J. E. Stochastic Processes and Statistical Physics J. Roy. Stat. Soc. B 1949, 11, 150-210
-
(1949)
J. Roy. Stat. Soc. B
, vol.11
, pp. 150-210
-
-
Moyal, J.E.1
-
48
-
-
20844432892
-
Stochastic Reaction-Diffusion Simulation with MesoRD
-
Hattne, J.; Fange, D.; Elf, J. Stochastic Reaction-Diffusion Simulation with MesoRD Bioinformatics 2005, 21, 2923-2924
-
(2005)
Bioinformatics
, vol.21
, pp. 2923-2924
-
-
Hattne, J.1
Fange, D.2
Elf, J.3
-
49
-
-
84886703781
-
-
Ph.D Dissertation, Université Libre de Bruxelles.
-
Kitahara, K. Ph.D Dissertation, Université Libre de Bruxelles, 1974.
-
(1974)
-
-
Kitahara, K.1
-
50
-
-
0020118274
-
Neural Networks and Physical Systems with Emergent Collective Computational Abilities
-
Hopfield, J. Neural Networks and Physical Systems with Emergent Collective Computational Abilities Proc. Natl. Acad. Sci. 1982, 79, 2554-2558
-
(1982)
Proc. Natl. Acad. Sci.
, vol.79
, pp. 2554-2558
-
-
Hopfield, J.1
-
51
-
-
0001053893
-
An Introduction to Kinetics of First Order Phase Transition
-
Godreche, C. Cambridge University Press: New York
-
Langer, J. An Introduction to Kinetics of First Order Phase Transition. In Solids Far From Equilibrium; Godreche, C., Ed.; Cambridge University Press: New York, 1991; p 297.
-
(1991)
Solids Far from Equilibrium
, pp. 297
-
-
Langer, J.1
-
53
-
-
0343618805
-
Chemical Instabilities and Chaos
-
Kluwer Academic Publishers: Amsterdam
-
Nicolis, G.; Baras, F.; Geysermans, P.; Peeters, P. Chemical Instabilities and Chaos. In Chemical Waves and Patterns; Kluwer Academic Publishers: Amsterdam, 1995; p 573.
-
(1995)
Chemical Waves and Patterns
, pp. 573
-
-
Nicolis, G.1
Baras, F.2
Geysermans, P.3
Peeters, P.4
-
54
-
-
34250320968
-
Quantifying Robustness and Dissipation Cost of Yeast Cell Cycle Network: The Funneled Energy Landscape Perspectives
-
Han, B.; Wang, J. Quantifying Robustness and Dissipation Cost of Yeast Cell Cycle Network: The Funneled Energy Landscape Perspectives Biophys. J. 2007, 92, 3755-3763
-
(2007)
Biophys. J.
, vol.92
, pp. 3755-3763
-
-
Han, B.1
Wang, J.2
-
55
-
-
33751411334
-
Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle
-
Wang, J.; Huang, B.; Xia, X. F.; Sun, Z. R. Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle PLoS Comput. Biol. 2006, 2, e147
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. 147
-
-
Wang, J.1
Huang, B.2
Xia, X.F.3
Sun, Z.R.4
-
56
-
-
0036830554
-
Asymptotic Relaxation of Reversible Bimolecular Chemical Reactions
-
Gopich, I. V.; Szabo, A. Asymptotic Relaxation of Reversible Bimolecular Chemical Reactions Chem. Phys. 2002, 284, 91-102
-
(2002)
Chem. Phys.
, vol.284
, pp. 91-102
-
-
Gopich, I.V.1
Szabo, A.2
|