The diversity and biogeography of the Coleoptera of Churchill: Insights from DNA barcoding

BMC Ecology

Volumn 13, Issue , 2013, Pages

  Woodcock, Thomas S ^a   Boyle, Elizabeth E ^b   Roughley, Robert E ^c   Kevan, Peter G ^a   Labbee, Renee N ^b   Smith, Andrew B T ^d   Goulet, Henri ^e   Steinke, Dirk ^b   Adamowicz, Sarah J ^b  

^a UNIVERSITY OF GUELPH   (Canada)

^b UNIVERSITY OF GUELPH   (Canada)

^c UNIVERSITY OF MANITOBA   (Canada)

^d CANADIAN MUSEUM OF NATURE   (Canada)

^e Canadian National Collection of Insects   (Canada)

Author keywords

Barcode library; Barcoding biotas; Boreal arctic transition; COI; Cytochrome c oxidase subunit I; DNA barcoding; Freshwater; Subarctic forest; Terrestrial

Indexed keywords

BEETLE; BIOGEOGRAPHY; DNA; GUILD STRUCTURE; SPECIES DIVERSITY; SUBARCTIC REGION; TAXONOMY;

CANADA; CHURCHILL; MANITOBA;

CARABIDAE; COLEOPTERA; DYTISCIDAE; HEXAPODA; STAPHYLINIDAE;

ANIMAL; ARCTIC; ARTICLE; BEETLE; BIODIVERSITY; CANADA; CLASSIFICATION; DNA BARCODING; GENE LIBRARY; GENETICS; LARVA; PHYLOGENY;

ANIMALS; ARCTIC REGIONS; BEETLES; BIODIVERSITY; DNA BARCODING, TAXONOMIC; GENE LIBRARY; LARVA; MANITOBA; PHYLOGENY;

EID: 84886386878     PISSN: None     EISSN: 14726785     Source Type: Journal    
DOI: 10.1186/1472-6785-13-40     Document Type: Article

References (70)

1. Foottit RG, Adler PH. Insect biodiversity: science and society 2009, West Sussex, UK: Wiley-Blackwell.
2. Bousquet Y. Checklist of beetles of Canada and Alaska 1991, Publication # 1861/E: Biosystematics Research Center, Agriculture Canada, Ottawa.
3. Danks HV. Patterns of diversity in the Canadian insect fauna. Systematics and entomology: diversity, distribution, adaptation and application 1993, 51-74. Ottawa, Ontario, Canada: Memoirs of the Entomological Society of Canada 165, Ball GE, Danks HV.
4. Anderson RS. An overview of the beetles (Coleoptera) of the Yukon. Insects of the Yukon 1997, 405-444. Ottawa: Biological Survey of Canada (Terrestrial Arthropods), Danks HV, Downes JA.
5. Majka CG, Klimaszewski J. How far have we come: 170 years of research on Canadian Coleoptera. ZooKeys 2008, 2:1-10.
6. Danks HV, Foottit RD. Insects of the boreal zone of Canada. Can Ent 1989, 121:625-690.
7. Danks HV. Arctic Arthropods 1981, Ottawa: Entomological Society of Canada.
8. Scudder GGE. Present patterns in the fauna and flora of Canada. Canada and its Insect Fauna 1979, 87-179. Ottawa: Entomological Society of Canada, Danks HV.
9. Danks HV. Arctic insects as indicators of environmental change. Arctic 1992, 45:159-166.
10. Garry CE. Ground beetles (Coleoptera: Carabidae) of palaeoenvironmental significance of the forest-tundra and open woodland of northern Manitoba, Canada. Coleopts Bull 1993, 47:89-106.
11. Dyke AS, Dredge LA. Quaternary geology of the northwestern Canadian Shield. Quaternary geology of Canada and Greenland 1989, 189-214. Ottawa: Geological Survey of Canada, Fulton RJ.
12. Schwert DP, Ashworth AC. Late Quaternary history of the northern beetle fauna of North America: a synthesis of fossil and distributional evidence. Mem Entomol Soc Can 1988, 144:93-107.
13. Hill JK, Griffiths HM, Thomas CD. Climate change and evolutionary adaptations at species' range margins. Ann Rev Entomol 2011, 56:143-159.
14. Smith MA, Fisher BL, Hebert PDN. DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar. Philos T R Soc B 2005, 360:1825-1834.
15. Smith MA, Fernandez-Triana J, Roughley R, Hebert PDN. DNA barcode accumulation curves for understudied taxa and areas. Mol Ecol Resour 2009, 9(suppl. 1):208-216.
16. Radulovici AE, Sainte-Marie B, Dufresne F. DNA barcoding of marine crustaceans from the Estuary and Gulf of St. Lawrence: a regional-scale approach. Mol Ecol Resour 2009, 9:S181-S187.
17. Sheffield CS, Hebert PDN, Kevan PG, Packer L. DNA barcoding a regional bee (Hymenoptera: Apoidea) fauna and its potential for ecological studies. Mol Ecol Resour 2009, 9:S196-S207.
18. Zhou X, Adamowicz SJ, Jacobus LM, DeWalt RE, Hebert PDN. Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Front Zool 2009, 6:30. 10.1186/1742-9994-6-30, 2800108, 20003245.
19. Zhou X, Jacobus LM, DeWalt RE, Adamowicz SJ, Hebert PDN. Ephemeroptera, Plecoptera, and Trichoptera fauna of Churchill (Manitoba, Canada): insights into biodiversity patterns from DNA barcoding. JNABS 2010, 29:814-837.
20. McClure HE. Aspection in the biotic communities of the Churchill area, Manitoba. Ecol Monogr 1943, 13:1-35.
21. Stahlhut JK, Fernández-Triana J, Adamowicz SJ, Buck M, Goulet H, Hebert PDN, Huber JT, Merilo M, Sheffield CS, Woodcock T, Smith MA. DNA barcoding reveals diversity of Hymenoptera and the dominance of parasitoids in a sub-arctic environment. BMC Ecol 2013, 13:2. 10.1186/1472-6785-13-2, 3565895, 23351160.
22. Bergsten J, Bilton DT, Fujisawa T, Elliott M, Monaghan MT, Balke M, Hendrich L, Geijer J, Herrmann J, Foster GN, Ribera I, Nilsson AN, Barraclough TG, Vogler AP. The effect of geographical scale of sampling on DNA barcoding. Syst Biol 2012, 61:851-869. 10.1093/sysbio/sys037, 3417044, 22398121.
23. Ratnasingham S, Hebert PDN. BOLD: the barcode of life data system. Mol Ecol Notes 2007, 7:355-364. (http://www.barcodinglife.org), 10.1111/j.1471-8286.2007.01678.x, 1890991, 18784790.
24. Larson DJ, Alaire Y, Roughley RE. Predaceous diving beetles (Coleoptera: Dytiscidae) of the Nearctic region, with emphasis on the fauna of Canada and Alaska 2000, Ottawa: National Research Council of Canada Press.
25. Triplehorn CA, Johnson NF. Borror and DeLong's Introduction to the Study of Insects (7th edition) 2004, Belmont, California, USA: Brooks Cole, 7.
26. Bouchard P, Bousquet Y, Davies AE, Alonso-Zarazaga MA, Lawrence JF, Lyal CHC, Newton AF, Reid CAM, Schmitt M, Slipiński SA, Smith ABT. Family-group names in Coleoptera (Insecta). ZooKeys 2011, 88:1-972. 3088472, 21594053.
27. Ivanova NV, DeWaard JR, Hebert PDN. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol Ecol Notes 2006, 6:998-1002.
28. Ivanova NV, DeWaard JR, Hebert PDN. CCDB Protocols, Glass Fiber Plate DNA Extraction 2007, http://ccdb.ca//CCDB_DOCS/CCDB_DNA_Extraction.pdf.
29. Ivanova NV, Grainger CM. CCDB Protocols, Sequencing 2007, http://ccdb.ca//CCDB_DOCS/CCDB_Sequencing.pdf.
30. Ivanova NV, Grainger CM. CDB Protocols, COI amplification 2007, http://ccdb.ca//CCDB_DOCS/CCDB_Amplification.pdf.
31. Ivanova NV, Grainger CM. CCDB Protocols, Primer Sets 2007, http://www.ccdb.ca/docs/CCDB_PrimerSets.pdf.
32. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 3203626, 21546353.
33. Meusnier I, Singer GAC, Landry JF, Hickey DA, Hebert PDN, Hajibabaei M. A universal DNA mini-barcode for biodiversity analysis. BMC Genomics 2008, 9:214. 10.1186/1471-2164-9-214, 2396642, 18474098.
34. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4(Suppl 4):406-425.
35. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980, 16:111-120. 10.1007/BF01731581, 7463489.
36. Collins RA, Boykin LM, Cruickshank RH, Armstrong KF. Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification. MEE 2012, 3:457-465.
37. Srivathsan A, Meier R. On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature. Cladistics 2012, 28:190-194.
38. Ratnasingham S, Hebert PDN. A DNA-based registry for all animal species: the barcode index number (BIN) system. PLoS One 2013, 8:e66213. 10.1371/journal.pone.0066213, 3704603, 23861743.
39. Meyer CP, Paulay G. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 2005, 3:2229-2238.
40. Hebert PDN, Ratnasingham S, deWaard JR. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B Biol Sci 2003, 270:96-99.
41. Renaud AK, Savage J, Adamowicz SJ. DNA barcoding of northern Nearctic Muscidae (Diptera) reveals high correspondence between morphological and molecular species limits. BMC Ecol 2012, 12:24. 10.1186/1472-6785-12-24, 3537539, 23173946.
42. R Development Core Team R: A language and environment for statistical computing 2008, Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team.
43. Gotelli NJ, Colwell RK. Quantifying biodiversity: procedures and pitfalls in measurement and comparison of species richness. Ecol Lett 2001, 4:379-391.
44. Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, O'Hara RB, Simpson GL, Solymos P, Henry M, Stevens H, Wagner H. Vegan: Community Ecology Package. R package version 2.0-0 2011, http://vegan.r-forge.r-project.org/.
45. Chao A. Nonparametric estimation of the number of classes in a population. Scand J Stat 1984, 11:265-270.
46. Colwell R. EstimateS: Statistical estimation of species richness and shared species from samples 2009, http://purl.oclc.org/estimates.
47. Lindroth CH. 1961-1969. The ground-beetles (Carabidae, excl. Cicindelinae) of Canada and Alaska. Opuscula Entomol Suppl 1961, 20:1-200; 1963, 24:201-408; 1966, 29:409-648; 1968, 33:649-944; 1969a, 34:945-1192; 1969b, 35:I-XLVIII.
48. Elias SA, Kuzmina S, Kiselyov S. Late Tertiary origins of the Arctic beetle fauna. Palaeogeogr Palaeocl 2006, 241:373-392.
49. Schwert DP. Faunal transitions in response to an ice age: the late Wisconsinan record of Coleoptera in the north-central United States. Coleopts Bull 1992, 46:68-94.
50. Qian H, Fridley JD, Palmer MW. The latitudinal gradient of species-area relationships for vascular plants of North America. Am Nat 2007, 170:690-701. 10.1086/521960, 17926291.
51. Kuzmina ML, Johnson KL, Barron HR, Hebert PDN. Identification of the vascular plants of Churchill, Manitoba, using a DNA barcode library. BMC Ecol 2012, 12:25. 10.1186/1472-6785-12-25, 3538695, 23190419.
52. Larson DJ. Dytiscid water beetles (Coleoptera: Dytiscidae) of the Yukon. Insects of the Yukon 1997, 491-521. Ottawa: Biological Survey of Canada (Terrestrial Arthropods), Danks HV, Downes JA.
53. Ball GE, Currie DC. Ground beetles of the Yukon. Insects of the Yukon 1997, 446-489. Ottawa: Biological Survey of Canada (Terrestrial Arthropods), Danks HV, Downes JA.
54. Shorthouse JD, Goulet H, Shorthouse DP. Notes on cynipid galls, ground beetles and ground-dwelling spiders collected at Fort Severn, Ontario. Arctic 2003, 56:159-167.
55. Fernandez-Triana J, Smith MA, Boudreault C, Goulet H, Hebert PDN, Smith AC, Roughley R. A poorly known high-latitude parasitoid wasp community: unexpected diversity and dramatic changes through time. PLoS One 2011, 6:e23719. 10.1371/journal.pone.0023719, 3163582, 21897854.
56. Smith MA, Woodley NE, Janzen DH, Hallwachs W, Hebert PDN. DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proc Natl Acad Sci USA 2006, 103:3657-3662. 10.1073/pnas.0511318103, 1383497, 16505365.
57. Smith MA, Wood DM, Janzen DH, Hallwachs W, Hebert PDN. DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera: Tachinidae) are not all generalists. Proc Natl Acad Sci USA 2007, 104:4967-4972. 10.1073/pnas.0700050104, 1821123, 17360352.
58. Smith MA, Rodriguez JJ, Whitfield JB, Deans AR, Janzen DH, Hallwachs W, Hebert PDN. Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proc Natl Acad Sci USA 2008, 105:12359-12364. 10.1073/pnas.0805319105, 2518452, 18716001.
59. Spitzer K, Danks HV. Insect diversity of boreal peat bogs. Ann Rev Entomol 2006, 51:137-161.
60. Kevan PG, Danks HV. Arctic Insects. The Arctic and its Wildlife 1986, 72-77. New York: Facts on File Publications, Sage B.
61. Matthews JV, Telka A. Insect fossils from the Yukon. Insects of the Yukon 1997, 911-962. Ottawa: Biological Survey of Canada (Terrestrial Arthropods), Danks HV, Downes JA.
62. Goulet H, Baum BR. Analysis of variation in the Elaphrus americanus complex of North America (Coleoptera: Carabidae). Can J Zool 1981, 59:2253-2274.
63. Haldane JBS in Hutchinson GE Homage to Santa Rosalia, or why are there so many kinds of animals?. Am Nat 1959, 93:145-159. Haldane JBS in Hutchinson GE.
64. Monaghan MT, Balke M, Gregory TR, Vogler AP. DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers. Philos T R Soc B 2005, 360:1925-1933.
65. Odegaard F. How many species of arthropods? Erwin's estimate revised. Biol J Linn Soc Lond 2000, 71:583-597.
66. Bernatchez L, Wilson CC. Comparative phylogeography of Nearctic and Palaearctic fishes. Mol Ecol 1998, 7:431-452.
67. Hewitt GM. The genetic legacy of the Quaternary ice ages. Nature 2000, 405:907-913. 10.1038/35016000, 10879524.
68. Hewitt GM. Genetic consequences of climatic oscillations in the Quaternary. Philos T R Soc B 2004, 359:183-195.
69. Mardulyn P, Mikhailov YE, Pasteels JM. Testing phylogeographic hypotheses in a Euro-Siberian cold-adapted leaf beetle with coalescent simulations. Evolution 2009, 63:2717-2729. 10.1111/j.1558-5646.2009.00755.x, 19545269.
70. Shafer ABA, Cullingham CI, Cote SD, Coltman DW. Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America. Mol Ecol 2010, 19:4589-4621. 10.1111/j.1365-294X.2010.04828.x, 20849561.