Population differentiation of 2 forms of Bryde's Whales in the Indian and Pacific Oceans

Journal of Heredity

Volumn 104, Issue 6, 2013, Pages 755-764

  Kershaw, Francine ^a,b   Leslie, Matthew S ^b,c,h   Collins, Tim ^d,e   Mansur, Rubaiyat M ^d   Smith, Brian D ^d   Minton, Gianna ^e,f   Baldwin, Robert ^e   LeDuc, Richard G ^c   Anderson, R Charles ^g   Brownell, Robert L ^c   Rosenbaum, Howard C ^a,b,d  

^a Och Spine at New York Presbyterian Hospitals   (United States)

^b DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

^c NOAA EARTH SYSTEM RESEARCH LABORATORY   (United States)

^d WILDLIFE CONSERVATION SOCIETY   (United States)

^e Environment Society of Oman Whale and Dolphin Research Group   (Oman)

^f WWF Gabon ^*  (Gabon)

^g Manta Marine Pvt Ltd   (Maldives)

^h UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Balaenoptera; Bryde's whale; conservation; Indo Pacific; management; population structure

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL GENETICS; ARTICLE; BALAENOPTERA EDENI BRYDEI; BALAENOPTERA EDENI EDENI; BANGLADESH; GENE SEQUENCE; GENETIC VARIABILITY; HAPLOTYPE; INDIAN OCEAN; MALDIVES; MOLECULAR PHYLOGENY; NONHUMAN; OMAN; PACIFIC OCEAN; POPULATION DIFFERENTIATION; POPULATION GENETICS; POPULATION STRUCTURE; PRIORITY JOURNAL; WHALE;

BALAENOPTERA; BRYDE'S WHALE; CONSERVATION; INDO PACIFIC; MANAGEMENT; POPULATION STRUCTURE;

ANIMALS; BALAENOPTERA; DNA, MITOCHONDRIAL; GENETIC VARIATION; GENETICS, POPULATION; HAPLOTYPES; INDIAN OCEAN; OCEANOGRAPHY; PACIFIC OCEAN; PHYLOGENY;

EID: 84886260887     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/est057     Document Type: Article

References (54)

1. Baker CS. 2013. Journal of heredity adopts joint data archiving policy. J Hered. 104:1
2. Baker CS, Medrano-Gonzalez L, Calambokidis J, Perry A, Pichler F, Rosenbaum H, Straley JM, Urban-Ramirez J, Yamaguchi M, von Ziegesar O. 1998. Population structure of nuclear and mitochondrial DNA variation among humpback whales in the North Pacific. Mol Ecol. 7:695-707
3. Baker CS, Perry A, Bannister JL, Weinrich MT, Abernethy RB, Calambokidis J, Lien J, Lambertsen RH, Ramírez JU, Vasquez O. 1993. Abundant mitochondrial DNA variation and world-wide population structure in humpback whales. Proc Natl Acad Sci USA. 90:8239-8243
4. Bandelt HJ, Forster P, RÖhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37-48
5. Best PB. 1997. Two allopatric forms of Bryde's whale off south Africa. Rep Int Whal Comm. 39:363-369
6. Best PB. 2001. Distribution and population separation of Bryde's whale Balaenoptera edeni off southern Africa. Mar Ecol Prog Ser. 220:277-289
7. Bijukumar A, Jijith SS, Suresh Kumar U, George S. 2012. DNA barcoding of the Bryde's whale Balaenoptera edeni Anderson (Cetacea: Balaenopteridae) washed ashore along Kerala coast, India. J Threatened Taxa. 4:2436-2443
8. Cassens I, Mardulyn P, Milinkovitch MC 2005. Evaluating intraspecific "network" construction methods using simulated sequence data: Do existing algorithms outperform the global maximum parsimony approach? Syst Biol. 54:363-372
9. Clapham PJ, Agular A, Hatch LT. 2008. Determining spatial and temporal scales for management: Lessons from whaling. Mar Mamm Sci. 24:183-201
10. Committee on Taxonomy. 2011. List of marine mammal species and subspecies. [cited 2012 May 16]. Available from: Http://www.marinemammalscience. org
11. Dale J, Von Schantz M. 2007. From genes to genomes: Concepts and applications of DNA technology. West Sussex (UK): John Wiley & Sons Ltd
12. Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: More models, new heuristics and parallel computing. Nat Methods. 9:772
13. DeSalle R, Egan MG, Siddall M. 2005. The unholy trinity: Taxonomy, species delimitation and DNA barcoding. Philos Trans R Soc Lond B Biol Sci. 360:1905-1916
14. Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10:564-567
15. Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics. 131:479-491
16. Fitch WM. 1971. Toward defining the course of evolution: Minimum change for specific tree topology. Systematic Zool. 20:406-416
17. Fluxus Technology Ltd. 1999-2010. NETWORK ver 4.6.0.0. [cited 2012 February 10]. Available from: Http://www.fluxus-engineering.com
18. Gaines CA, Hare MP, Beck SE, Rosenbaum HC. 2005. Nuclear markers confirm taxonomic status and relationships among highly endangered and closely related right whale species. Proc Biol Sci. 272:533-542
19. Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680
20. Kanda N, Goto M, Kato H, McPhee MV, Pastene LA. 2007. Population genetic structure of Bryde's whales (Balaenoptera brydei) at the inter-oceanic and trans-equatorial levels. Conserv Genet. 8:853-864
21. Kato H, Perrin WF. 2009. Bryde's whales Balaenoptera edeni/brydei. In: Perrin WF, Würsig B, Thewissen JGM, editors. Encyclopedia of marine mammals. Amsterdam: Academic Press. p. 158-163
22. LeDuc RG, Dizon AE, Goto M, Pastene LA, Kato H, Nishiwaki S, LeDuc CA, Brownell RL Jr. 2007. Patterns of genetic variation in Southern Hemisphere blue whales and the use of assignment test to detect mixing on the feeding grounds. J Cetacean Res Manage. 9:73-80
23. Librado P, Rozas J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451-1452
24. Longhurst A. 2007. Ecological geography of the sea. 6th ed. Oxford: Elsevier
25. Lowenstein JH, Amato G, Kolokotronis SO. 2009. The real maccoyii: Identifying tuna sushi with DNA barcodes-contrasting characteristic attributes and genetic distances. PLoS One. 4:e7866
26. Mardulyn P. 2012. Trees and/or networks to display intraspecific DNA sequence variation? Mol Ecol. 21:3385-3390
27. Mendez M, Rosenbaum HC, Subramaniam A, Yackulic C, Bordino P. 2010. Isolation by environmental distance in mobile marine species: Molecular ecology of franciscana dolphins at their southern range. Mol Ecol. 19:2212-2228
28. Mikhalev YA. 2000. Whaling in the Arabian Sea by the whaling fleets Slava and Sovetskaya Ukraina. In: Zemsky VA, Yablokov AV, editors. Soviet whaling data [1949-1979]. Moscow (Russia): Center for Russian Environmental Policy, Marine Mammal Council. p. 141-181
29. Morin PA, Archer FI, Foote AD, Vilstrup J, Allen EE, Wade P, Durban J, Parsons K, Pitman R, Li L, et al. 2010. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 20:908-916
30. Page RD, Charleston MA. 1997. From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem. Mol Phylogenet Evol. 7:231-240
31. Patenaude NJ, Portway VA, Schaeff CM, Bannister JL, Best PB, Payne RS, Rowntree VJ, Rivarola M, Baker CS. 2007. Mitochondrial DNA diversity and population structure among southern right whales (Eubalaena australis). J Hered. 98:147-157
32. Penry GS, Cockroft VG, Hammond P. 2011. Seasonal fluctuations in occurrence of inshore Bryde's whales in Plettenberg Bay, South Africa, with notes on feeding and multispecies associations. Afr J Mar Sci. 33:403-414
33. Perrin WF, Brownell RL Jr. 2007. Proposed updates to the List of Recognised Species of Cetaceans. Rep Int Whal Comm. SC/59/O15:1-4
34. Perrin WF, Dolar MLL, Ortega E. 1996. Osteological comparison of Bryde's whales from the Philippines with specimens from other regions. Rep Int Whal Comm. 46:409-413
35. Rambaut A. 2009. Figtree: Tree Figure Drawing Tool, Version 1.3.1. Edinburgh (UK): Institut of Evolutionary Biology, University of Edinburgh
36. Reeves RR, Perrin WF, Taylor BL, Baker CS, Mesnick SL. 2004. Report of the workshop on shortcomings of cetacean taxonomy in relation to needs of conservation and management, April 30-May 2, 2004, La Jolla, California, NOAA Tech Mem. NOAA-NMFS-SWFSC-363:59-60. Silver Spring (MD): NOAA
37. Rosenbaum HC, Egan MG, Clapham PJ, Brownell RL Jr, Malik S, Brown MW, White BN, Walsh P, Desalle R. 2000. Utility of North Atlantic right whale museum specimens for assessing changes in genetic diversity. Conserv Biol. 14:1837-1842
38. Rosenbaum HC, Pomilla C, Mendez M, Leslie MS, Best PB, Findlay KP, Minton G, Ersts PJ, Collins T, Engel MH, et al. 2009. Population structure of humpback whales from their breeding grounds in the South Atlantic and Indian Oceans. PLoS One. 4:e7318
39. Sarkar IN, Thornton JW, Planet PJ, Figurski DH, Schierwater B, DeSalle R. 2002. An automated phylogenetic key for classifying homeoboxes. Mol Phylogenet Evol. 24:388-399
40. Sasaki T, Nikaido M, Wada S, Yamada TK, Cao Y, Hasegawa M, Okada N. 2006. Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage. Mol Phylogenet Evol. 41:40-52
41. Sessa EB, Zimmer EA, Givnish TJ. 2012. Phylogeny, divergence times, and historical biogeography of New World Dryopteris (Dryopteridaceae). Am J Bot. 99:730-750
42. Sharma R, Goossens B, Kun-Rodrigues C, Teixeira T, Othman N, Boone JQ, Jue NK, Obergfell C, O'Neill RJ, Chikhi L. 2012. Two different high throughput sequencing approaches identify thousands of de novo genomic markers for the genetically depleted Bornean elephant. PLoS One. 7:e49533
43. Spalding M, Fox HE, Allen GR, Davidson N, Ferdaña ZA, Finlayson M, Halpern BS, Jorge MA, Lombana AL, Lourie SA, et al. 2007. Marine ecoregions of the world: A bioregionalization of coastal and shelf areas. Bioscience. 57:573-583
44. Stevick PT, Allen J, Clapham PJ, Katona SK, Larsen F, Lien J, Mattila DK, Palsbøll PJ, Sears R, Sigurjónsson J, et al. 2006. Population spatial structuring on the feeding grounds in North Atlantic humpback whales (Megaptera novaeangliae). J Zool. 270:244-255
45. Swofford DL. 2002. PAUP Phylogenetic Analysis Using Parsimony (and other methods). Sunderland (MA): Sinauer Associates
46. Tamura K, Peerson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28: 2731-2739
47. Taylor B. 2005. Identifying units to conserve. In: Reynolds JE, Perrin WF, Reeves RR, Montgomery S, Ragen TJ, editors. Marine mammal research, conservation beyond crisis. Baltimore (MD): John Hopkins University Press. p. 149-164
48. Wada S, Numachi K. 1991. Allozyme analyses of genetic differentiation among populations and species of the Balaenoptera. Rep Int Whal Comm. 13(special issue):125-154
49. Wada S, Oishi M, Yamada TK. 2003. A newly discovered species of living baleen whale. Nature. 426:278-281
50. Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution. 38:1358-1370
51. Yamada TK. 2009. Balaenoptera omurai. In: Ohdachi SD, Ishibashi Y, Iwasa MA, Saitoh T, editors. The wild mammals of Japan. Kyoto (Japan): Shoukadoh
52. Yamada TK, Chou L-S, Chantrapornsyl S, Adulyanukosol K, Chakravarti SK, Oishi M, Wada S, Yao C-J, Kakuda T, Tajima Y, et al. 2006. Middle sized Balaenopterid whale specimens (Cetacea: Balaenopteridae) preserved at several institutions in Taiwan, Thailand, and India. Mem Natl Sci Mus Tokyo. 44:1-10
53. Yamada TK, Kakuda T, Tajima Y. 2008. Middle sized balaenopterid whale specimens in the Philippines and Indonesia. Mem Natl Sci Mus Tokyo. 45:75-83
54. Yoshida H, Kato H. 1999. Phylogenetic relationships of Bryde's whales in the Western North Pacific and adjacent waters inferred from mitochondrial DNA sequences. Mar Mamm Sci. 15:1269-1286