Population genetic structure of Bryde's whales (Balaenoptera brydei) at the inter-oceanic and trans-equatorial levels

Conservation Genetics

Volumn 8, Issue 4, 2007, Pages 853-864

  Kanda, Naohisa ^a   Goto, Mutsuo ^a   Kato, Hidehiro ^b   McPhee, Megan V ^c   Pastene, Luis A ^a  

^a T   (Japan)

^b TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^c UNIVERSITY OF MONTANA   (United States)

Author keywords

Bryde's whales; Gene flow; Microsatellite; mtDNA; Population genetic structure

Indexed keywords

CONSERVATION MANAGEMENT; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC VARIATION; HYPOTHESIS TESTING; MITOCHONDRIAL DNA; POPULATION GENETICS; SPECIES CONSERVATION; WHALE;

BALAENOPTERA; BALAENOPTERA BRYDEI; CETACEA; MYSTICETI;

EID: 34547102483     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-006-9232-8     Document Type: Article

References (62)

1. Abe H, Goto M, Pastene LA, Dewa K, Naito E (2001) Practical use of multiplex fluorescent PCR for cetacean sex identification. Mar Mammal Sci 17:657-664
2. Allen KR (1980) Conservation and management of Whales. Washington University Press, Seattle
3. Árnason Ú, Gullberg A, Widegten B (1993) Cetacean mitochondrial DNA control region: sequences of all extant baleen whales and two sperm whale species. Mol Biol Evol 10:960-970
4. Avise JC (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge
5. Baker CS, Perry A, Bannister JL, Weinrich MT, Abernethy RB, Calambokidis J, Lien J, Lambertsen RH, Urban-Ramirez J, Vasquez O, Clapham PJ, Alling A, O'Brien SJ, Palumbi SR (1993) Abundant mitochondrial DNA variation and world-wide population structure in humpback whales. Proc Natl Acad Sci USA 90:8239-8243
6. Baker CS, Slade RW, Bannister JL, Abernethy RB, Weinrich MT, Lien J, Urban-Ramirez J, Corkeron P, Calambokidis J, Vasquez O, Palumbi SR (1994) Hierarchical structure of mitochondrial DNA gene flow among humpback whales, world-wide. Mol Ecol 3:313-327
7. Baker CS, Patenaude NJ, Bannister JL, Robins J, Kato H (1999) Distribution and diversity of mtDNA lineages among southern right whales (Eubalaena australis) from Australia and New Zealand. Mar Bio 134:1-7
8. Bakke I, Johansen S, Bakke Ø, El-Gewely MR (1996) Lack of population subdivision among the minke whales (Balaenoptera acutorostrata) from Icelandic and Norwegian waters based on mitochondrial DNA sequences. Mar Bio 125:1-9
9. Best PB (1977) Two allopatric forms of Bryde's whale off South Africa. Rep int Whal Commn (Special issue 1):10-38
10. Berta A, Sumich JL (1999) Marine mammals: evolutionary biology. Academic Press, San Diego
11. Bérubé M, Aguilar A, Dendanto D, Larsen F, Notarbartolo-di-Sciara G, Sears R, Sigurjónsson J, Urban-Ramirez J, Palsbøll PJ (1998) Population genetic structure of North Atlantic, Mediterranean Sea and Sea of Cortez fin whales, Balaenoptera physalus (Linnaeus, 1758); analysis of mitochondrial and nuclear loci. Mol Ecol 7:585-599
12. Bérubé M, Jørgensen H, Mcewing R, Palsbøll PJ (2000) Polymorphic di-nucleotide microsatellite loci isolated from the humpback whale, Megaptera novaeanglliae. Mol Ecol 9:2181-2183
13. Buchanan FC, Friesen MK, Littlejohn RP, Clayton JA (1996) Microsatellites from beluga whale Delphinapterus leucas. Mol Ecol 5:571-575
14. Falconer DS (1989) Introduction to quantitative genetics. 3rd ed. Longman Scientific & Technical, Essex
15. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) 3.5c. University of Washington, Seattle
16. Goto M, Pastene LA (1997) Population structure of the western North Pacific minke whale based on an RFLP analysis of the mtDNA control region. Rep Intl Whal Commn 47:531-537
17. Goudet J (1995) FSTAT, version 1.2: a computer program to calculate F-statistics. J Hered 86:485-486
18. Government of Japan (2003) 2000 and 2001 feasibility study report: report of 2000 and 2001 feasibility study of the Japanese whale research program under special permit in the western North Pacific-phase II (JARPNII). In: Government of Japan (ed) Cetacean and multi-species fisheries management. Government of Japan
19. Hartl DL, Clark AG (1989) Principles of population genetics, 2nd ed. Sinauer Associate, Inc., Massachusetts
20. Hoelzel AR (1998) Genetic structure of cetacean populations in sympatry, parapatry, and mixed assemblages: implications for conservation policy. J Hered 89:451-458
21. Hoelzel AR, Hancock JM, Dover GA (1991) Evolution of the cetacean mitochondrial control region. Mol Biol Evol 8:475-493
22. Hudson RR, Boos DD, Kaplan NL (1992) A statistical test for detecting geographic subdivision. Mol Biol Evol 9:138-151
23. International Whaling Commission (1997) Report of the Scientific Committee, Annex G. Report of the sub-committee in North Pacific Bryde's whales. Rep Int Whal Commn 47:163-168
24. Kanda N, Goto M, Pastene LA (2006) Genetic characteristics of western North Pacific sei whales, Balaenoptera borealis, as revealed by microsatellites. Mar Biotechnol 8:86-93. First published on November 23, 2005, DOI: 10.1007/s10126-005-5130-1
25. Kato H (2002) Bryde's whales. In: Perrin WF, Würsig B, Hewissen JGM (eds) Encyclopedia of marine mammals. Academic Press, San Diego, pp 171-177
26. Kishiro T (1996) Movements of marked Bryde's whales in the western North Pacific. Rep Int Whal Commn 46:421-428
27. Lyrholm T, Leimar O, Gyllensten U (1996) Low diversity and biased substitution patterns in the mitochondrial DNA control region of sperm whales: implications for estimated of time since common ancestry. Mol Biol Evol 13:1318-1327
28. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
29. Nemoto T (1959) Food of baleen whales with reference to whale movement. Sci Rep Whales Res Inst Tokyo 14:149-291
30. Ohsumi S (1978) Bryde's whales in the North Pacific in 1976. Rep Int Whal Commn 28:277-280
31. Ohsumi S (1979) Provisional report of the Bryde's whales caught under special permit in the Southern Hemisphere in 1977/78 and research programme for 1978/1979. Rep Int Whal Commn 29:267-273
32. Ohsumi S (1980) Population study of the Bryde's whale in the Southern Hemisphere under special permit in the three seasons, 1976/77-1978/79. Rep Int Whal Commn 30:319-331
33. Ohsumi S (1981) Further estimation of population sizes of Bryde's whales in the South Pacific and Indian Oceans using sighting data. Rep Int Whal Commn 31:407-415
34. Omura H (1959) Bryde's whales from the coast of Japan. Sci Rep Whales Res Inst Tokyo 14:1-33
35. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Compu Appl Biosci 12:357-358
36. Palsbøll PJ, Bérubé M, Larsen AH, Jørgensen H (1997) Primers for the amplification of tri-and tetramer microsatellite loci in baleen whales. Mol Ecol 6:893-895
37. Pastene LA, Goto M, Itoh S, Wada S, Kato H (1997) Intra- and inter-oceanic patterns of mitochondrial DNA variation in the Bryde's whales, Balaenoptera edeni. Rep Int Whal Commn 47:569-574
38. Pastene LA, Goto M, Kishino H (1998) An estimate of the mixing proportion of 'J' and 'O' stocks minke whales in sub-area 11 based on mitochondrial DNA haplotype data. Rep Int Whal Commn 48:471-474
39. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
40. Ramirez PA (1985) Peru. Progress report on cetacean research, October-December 1983. Rep Int Whal Commn 35:176-177
41. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 83:248-249
42. Reed DH, Frankham R (2001) How closely correlated are molecular and quantitative measures of genetic diversity: a meta-analysis. Evolution 55:1095-1103
43. Rice DW (1998) Marine mammals of the world: systematics and distribution. Society for Marine Mammalogy, Lawrence
44. Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223-225
45. 2 and the problem of small samples. Mol Biol Evol 6:539-545
46. Rosenbaum HC, Brownell RL Jr., Brown MW, Schaeff C, Portway V, White BN, Malik S, Pastene LA, Patenaude NJ, Baker CS, Goto M, Best PB, Clapham PJ, Hamilton P, Moore M, Payne R, Rowntree V, Tynan CT, Bannister JL, DeSalle R (2000) World-wide genetic differentiation of Eubalaena: questioning the number of right whale species. Mol Ecol 9:1793-1802
47. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, New York
48. Schneider S, Roessli D, Excoffier L (2000) Arlequin ver 2.000: a software for population genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology and Ecology University of Geneva, Geneva
49. Shimada H, Miyashita T (1999) Report of the Scientific Committee, Annex D, Appendix 13. Sightings and abundance estimate for western North Pacific Bryde's whales. J Cetacean Res Manage 1(Suppl):108-115
50. Sokal RR, Rohlf FJ (1995) Biometry: the principles of statistics in biological research. Freeman and Company, New York
51. Takahata N, Palumbi SR (1985) Extranuclear differentiation and gene flow in the finite island model. Genetics 109:441-457
52. Valdivia J, Franco F, Ramirez P (1981) The exploitation of Bryde's whales in the Peruvian sea. Rep Int Whal Commn 31:441-448
53. Valsecchi E, Amos W (1996) Microsatellite markers for the study of cetacean populations. Mol Ecol 5:151-156
54. f frequencies of the western North Pacific stock of Bryde's whales. Rep Int Whal Commn 46:459-460
55. Wada S, Numachi K (1991) Allozyme analyses of genetic differentiation among the populations and species of the Balaenoptera. Rep Int Whal Commn (Special issue 13):125-154
56. Wada S, Oishi M, Yamada T (2003) A newly discovered species of living baleen whale. Nature 426:278-281
57. Waldick RC, Kraus S, Brown M, White BN (2002) Evaluating the effects of historic bottleneck events: as assessment of microsatellite variability in the endangered, North Atlantic right whale. Mol Ecol 11:2241-2249
58. Waples RS (1998) Separating the wheat from the chaff: Patterns of genetic differentiation in high gene flow species. J Hered 89:438-450
59. Ward RD, Woodward M, Skibinski DOF (1994) A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes. J Fish Biol 44:213-232
60. Williams ST, Jara J, Gomez E, Knowlton N (2002) The marine Indo-West Pacific break: contrasting the resolving power of mitochondrial and nuclear genes. Integr Comp Biol 42:941-952
61. Wright S (1969) Evolution and the genetics of populations, vol. 2, The theory of gene frequencies. University of Chicago Press, Chicago
62. Yoshida H, Kato H (1999) Phylogenetic relationships of Bryde's whales in the western North Pacific and adjacent waters inferred from mitochondrial DNA sequences. Mar Mammal Sci 15:1269-1286